data_3D2D # _model_server_result.job_id Xr8APIoZe7bo4itbOOw3JQ _model_server_result.datetime_utc '2024-10-17 01:44:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 3D2D # _exptl.entry_id 3D2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.62 _cell.angle_gamma 90 _cell.entry_id 3D2D _cell.length_a 98.938 _cell.length_b 93.649 _cell.length_c 63.155 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B NAG 2 B 2 NAG A 602 NAG 2 n B MAN 3 B 3 MAN A 603 MAN 2 n B MAN 4 B 4 MAN A 604 MAN 2 n B MAN 5 B 5 MAN A 605 MAN 2 n B MAN 6 B 6 MAN A 606 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 89 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 38 A ASN 38 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND1 HIS 104 A HIS 104 1_555 D C8M FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale3 A SG CYS 166 A CYS 166 1_555 D C6 FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale4 A ND2 ASN 471 A ASN 471 1_555 C C1 NAG . A NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B O3 MAN . B MAN 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 B O2 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 B O2 MAN . B MAN 5 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3D2D _atom_sites.fract_transf_matrix[1][1] 0.010107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001895 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 607 607 NAG NAG . D 4 FAD A 1 600 600 FAD FAD . E 5 REN A 1 801 801 REN REN . F 6 HOH A 1 901 901 HOH HOH . F 6 HOH A 2 902 902 HOH HOH . F 6 HOH A 3 903 903 HOH HOH . F 6 HOH A 4 904 904 HOH HOH . F 6 HOH A 5 905 905 HOH HOH . F 6 HOH A 6 906 906 HOH HOH . F 6 HOH A 7 907 907 HOH HOH . F 6 HOH A 8 908 908 HOH HOH . F 6 HOH A 9 909 909 HOH HOH . F 6 HOH A 10 910 910 HOH HOH . F 6 HOH A 11 911 911 HOH HOH . F 6 HOH A 12 912 912 HOH HOH . F 6 HOH A 13 913 913 HOH HOH . F 6 HOH A 14 914 914 HOH HOH . F 6 HOH A 15 915 915 HOH HOH . F 6 HOH A 16 916 916 HOH HOH . F 6 HOH A 17 917 917 HOH HOH . F 6 HOH A 18 918 918 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 4 27.578 43.793 9.14 1 38.96 ? PA FAD 600 A 1 HETATM 2 O O1A FAD . . . D 4 27.534 42.479 8.399 1 38.96 ? O1A FAD 600 A 1 HETATM 3 O O2A FAD . . . D 4 28.702 44.66 8.637 1 38.96 ? O2A FAD 600 A 1 HETATM 4 O O5B FAD . . . D 4 26.175 44.555 8.96 1 38.96 ? O5B FAD 600 A 1 HETATM 5 C C5B FAD . . . D 4 24.97 43.951 9.362 1 38.96 ? C5B FAD 600 A 1 HETATM 6 C C4B FAD . . . D 4 23.841 44.489 8.495 1 38.96 ? C4B FAD 600 A 1 HETATM 7 O O4B FAD . . . D 4 23.773 45.898 8.598 1 38.96 ? O4B FAD 600 A 1 HETATM 8 C C3B FAD . . . D 4 24.083 44.162 7.037 1 38.96 ? C3B FAD 600 A 1 HETATM 9 O O3B FAD . . . D 4 22.853 43.851 6.431 1 38.96 ? O3B FAD 600 A 1 HETATM 10 C C2B FAD . . . D 4 24.583 45.453 6.444 1 38.96 ? C2B FAD 600 A 1 HETATM 11 O O2B FAD . . . D 4 24.129 45.58 5.118 1 38.96 ? O2B FAD 600 A 1 HETATM 12 C C1B FAD . . . D 4 23.974 46.511 7.345 1 38.96 ? C1B FAD 600 A 1 HETATM 13 N N9A FAD . . . D 4 24.892 47.649 7.49 1 38.96 ? N9A FAD 600 A 1 HETATM 14 C C8A FAD . . . D 4 26.236 47.578 7.729 1 38.96 ? C8A FAD 600 A 1 HETATM 15 N N7A FAD . . . D 4 26.725 48.835 7.792 1 38.96 ? N7A FAD 600 A 1 HETATM 16 C C5A FAD . . . D 4 25.714 49.705 7.599 1 38.96 ? C5A FAD 600 A 1 HETATM 17 C C6A FAD . . . D 4 25.67 51.091 7.565 1 38.96 ? C6A FAD 600 A 1 HETATM 18 N N6A FAD . . . D 4 26.716 51.786 7.999 1 38.96 ? N6A FAD 600 A 1 HETATM 19 N N1A FAD . . . D 4 24.466 51.727 7.339 1 38.96 ? N1A FAD 600 A 1 HETATM 20 C C2A FAD . . . D 4 23.316 50.988 7.151 1 38.96 ? C2A FAD 600 A 1 HETATM 21 N N3A FAD . . . D 4 23.372 49.61 7.189 1 38.96 ? N3A FAD 600 A 1 HETATM 22 C C4A FAD . . . D 4 24.551 48.976 7.408 1 38.96 ? C4A FAD 600 A 1 HETATM 23 N N1 FAD . . . D 4 24.265 41.044 18.508 1 38.96 ? N1 FAD 600 A 1 HETATM 24 C C2 FAD . . . D 4 23.708 41.591 19.654 1 38.96 ? C2 FAD 600 A 1 HETATM 25 O O2 FAD . . . D 4 22.688 42.285 19.568 1 38.96 ? O2 FAD 600 A 1 HETATM 26 N N3 FAD . . . D 4 24.377 41.501 20.862 1 38.96 ? N3 FAD 600 A 1 HETATM 27 C C4 FAD . . . D 4 25.612 40.895 20.914 1 38.96 ? C4 FAD 600 A 1 HETATM 28 O O4 FAD . . . D 4 26.222 40.869 21.978 1 38.96 ? O4 FAD 600 A 1 HETATM 29 C C4X FAD . . . D 4 26.173 40.35 19.764 1 38.96 ? C4X FAD 600 A 1 HETATM 30 N N5 FAD . . . D 4 27.428 39.788 19.809 1 38.96 ? N5 FAD 600 A 1 HETATM 31 C C5X FAD . . . D 4 28.057 39.411 18.64 1 38.96 ? C5X FAD 600 A 1 HETATM 32 C C6 FAD . . . D 4 29.359 38.939 18.689 1 38.96 ? C6 FAD 600 A 1 HETATM 33 C C7 FAD . . . D 4 30.037 38.589 17.526 1 38.96 ? C7 FAD 600 A 1 HETATM 34 C C7M FAD . . . D 4 31.421 38.009 17.608 1 38.96 ? C7M FAD 600 A 1 HETATM 35 C C8 FAD . . . D 4 29.38 38.675 16.297 1 38.96 ? C8 FAD 600 A 1 HETATM 36 C C8M FAD . . . D 4 30.114 38.345 15.023 1 38.96 ? C8M FAD 600 A 1 HETATM 37 C C9 FAD . . . D 4 28.066 39.147 16.249 1 38.96 ? C9 FAD 600 A 1 HETATM 38 C C9A FAD . . . D 4 27.407 39.528 17.417 1 38.96 ? C9A FAD 600 A 1 HETATM 39 N N10 FAD . . . D 4 26.105 39.997 17.383 1 38.96 ? N10 FAD 600 A 1 HETATM 40 C C10 FAD . . . D 4 25.505 40.44 18.55 1 38.96 ? C10 FAD 600 A 1 HETATM 41 C C1' FAD . . . D 4 25.406 40.199 16.068 1 38.96 ? C1' FAD 600 A 1 HETATM 42 C C2' FAD . . . D 4 25.486 41.664 15.639 1 38.96 ? C2' FAD 600 A 1 HETATM 43 O O2' FAD . . . D 4 24.727 42.48 16.506 1 38.96 ? O2' FAD 600 A 1 HETATM 44 C C3' FAD . . . D 4 24.954 41.858 14.229 1 38.96 ? C3' FAD 600 A 1 HETATM 45 O O3' FAD . . . D 4 25.719 41.088 13.333 1 38.96 ? O3' FAD 600 A 1 HETATM 46 C C4' FAD . . . D 4 25.067 43.32 13.836 1 38.96 ? C4' FAD 600 A 1 HETATM 47 O O4' FAD . . . D 4 24.503 43.503 12.561 1 38.96 ? O4' FAD 600 A 1 HETATM 48 C C5' FAD . . . D 4 26.53 43.743 13.819 1 38.96 ? C5' FAD 600 A 1 HETATM 49 O O5' FAD . . . D 4 26.764 44.641 12.762 1 38.96 ? O5' FAD 600 A 1 HETATM 50 P P FAD . . . D 4 28.107 44.501 11.888 1 38.96 ? P FAD 600 A 1 HETATM 51 O O1P FAD . . . D 4 28.507 45.849 11.336 1 38.96 ? O1P FAD 600 A 1 HETATM 52 O O2P FAD . . . D 4 29.223 43.929 12.729 1 38.96 ? O2P FAD 600 A 1 HETATM 53 O O3P FAD . . . D 4 27.692 43.462 10.721 1 38.96 ? O3P FAD 600 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #