data_3D2M # _model_server_result.job_id rFqSCLrKmvO4LUp_AUxbTA _model_server_result.datetime_utc '2025-08-31 10:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":438}' # _entry.id 3D2M # _exptl.entry_id 3D2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3D2M _cell.length_a 98.802 _cell.length_b 98.802 _cell.length_c 90.107 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 149 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 98.802 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 49.401 85.565042 0 4 'crystal symmetry operation' 4_666 -y+1,-x+1,-z+1 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 49.401 85.565042 90.107 5 'crystal symmetry operation' 5_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 98.802 0 90.107 6 'crystal symmetry operation' 6_556 x,x-y,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 90.107 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 188 n n N H GLU sing 189 n n N H2 GLU sing 190 n n CA C GLU sing 191 n n CA CB GLU sing 192 n n CA HA GLU sing 193 n n C O GLU doub 194 n n C OXT GLU sing 195 n n CB CG GLU sing 196 n n CB HB2 GLU sing 197 n n CB HB3 GLU sing 198 n n CG CD GLU sing 199 n n CG HG2 GLU sing 200 n n CG HG3 GLU sing 201 n n CD OE1 GLU doub 202 n n CD OE2 GLU sing 203 n n OE2 HE2 GLU sing 204 n n OXT HXT GLU sing 205 n n # _atom_sites.entry_id 3D2M _atom_sites.fract_transf_matrix[1][1] 0.010121 _atom_sites.fract_transf_matrix[1][2] 0.005844 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 437 1 COA COA . C 3 GLU A 1 438 1 GLU GLU . D 4 HOH A 1 439 1 HOH TIP . D 4 HOH A 2 440 2 HOH TIP . D 4 HOH A 3 441 3 HOH TIP . D 4 HOH A 4 442 4 HOH TIP . D 4 HOH A 5 443 5 HOH TIP . D 4 HOH A 6 444 6 HOH TIP . D 4 HOH A 7 445 7 HOH TIP . D 4 HOH A 8 446 8 HOH TIP . D 4 HOH A 9 447 9 HOH TIP . D 4 HOH A 10 448 10 HOH TIP . D 4 HOH A 11 449 11 HOH TIP . D 4 HOH A 12 450 12 HOH TIP . D 4 HOH A 13 451 13 HOH TIP . D 4 HOH A 14 452 14 HOH TIP . D 4 HOH A 15 453 15 HOH TIP . D 4 HOH A 16 454 16 HOH TIP . D 4 HOH A 17 455 17 HOH TIP . D 4 HOH A 18 456 18 HOH TIP . D 4 HOH A 19 457 19 HOH TIP . D 4 HOH A 20 458 20 HOH TIP . D 4 HOH A 21 459 21 HOH TIP . D 4 HOH A 22 460 22 HOH TIP . D 4 HOH A 23 461 23 HOH TIP . D 4 HOH A 24 462 24 HOH TIP . D 4 HOH A 25 463 25 HOH TIP . D 4 HOH A 26 464 26 HOH TIP . D 4 HOH A 27 465 27 HOH TIP . D 4 HOH A 28 466 28 HOH TIP . D 4 HOH A 29 467 29 HOH TIP . D 4 HOH A 30 468 30 HOH TIP . D 4 HOH A 31 469 31 HOH TIP . D 4 HOH A 32 470 32 HOH TIP . D 4 HOH A 33 471 33 HOH TIP . D 4 HOH A 34 472 34 HOH TIP . D 4 HOH A 35 473 35 HOH TIP . D 4 HOH A 36 474 36 HOH TIP . D 4 HOH A 37 475 37 HOH TIP . D 4 HOH A 38 476 38 HOH TIP . D 4 HOH A 39 477 39 HOH TIP . D 4 HOH A 40 478 40 HOH TIP . D 4 HOH A 41 479 41 HOH TIP . D 4 HOH A 42 480 42 HOH TIP . D 4 HOH A 43 481 43 HOH TIP . D 4 HOH A 44 482 44 HOH TIP . D 4 HOH A 45 483 45 HOH TIP . D 4 HOH A 46 484 46 HOH TIP . D 4 HOH A 47 485 47 HOH TIP . D 4 HOH A 48 486 48 HOH TIP . D 4 HOH A 49 487 49 HOH TIP . D 4 HOH A 50 488 50 HOH TIP . D 4 HOH A 51 489 51 HOH TIP . D 4 HOH A 52 490 52 HOH TIP . D 4 HOH A 53 491 53 HOH TIP . D 4 HOH A 54 492 54 HOH TIP . D 4 HOH A 55 493 55 HOH TIP . D 4 HOH A 56 494 56 HOH TIP . D 4 HOH A 57 495 57 HOH TIP . D 4 HOH A 58 496 58 HOH TIP . D 4 HOH A 59 497 59 HOH TIP . D 4 HOH A 60 498 60 HOH TIP . D 4 HOH A 61 499 61 HOH TIP . D 4 HOH A 62 500 62 HOH TIP . D 4 HOH A 63 501 63 HOH TIP . D 4 HOH A 64 502 64 HOH TIP . D 4 HOH A 65 503 65 HOH TIP . D 4 HOH A 66 504 66 HOH TIP . D 4 HOH A 67 505 67 HOH TIP . D 4 HOH A 68 506 68 HOH TIP . D 4 HOH A 69 507 69 HOH TIP . D 4 HOH A 70 508 70 HOH TIP . D 4 HOH A 71 509 71 HOH TIP . D 4 HOH A 72 510 72 HOH TIP . D 4 HOH A 73 511 73 HOH TIP . D 4 HOH A 74 512 74 HOH TIP . D 4 HOH A 75 513 75 HOH TIP . D 4 HOH A 76 514 76 HOH TIP . D 4 HOH A 77 515 77 HOH TIP . D 4 HOH A 78 516 78 HOH TIP . D 4 HOH A 79 517 79 HOH TIP . D 4 HOH A 80 518 80 HOH TIP . D 4 HOH A 81 519 81 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . C 3 36.508 -5.42 9.542 1 56.29 ? N GLU 438 A 1 HETATM 2 C CA GLU . . . C 3 37.699 -5.652 8.65 1 55.76 ? CA GLU 438 A 1 HETATM 3 C C GLU . . . C 3 37.319 -5.231 7.258 1 56.12 ? C GLU 438 A 1 HETATM 4 O O GLU . . . C 3 36.177 -4.825 7.036 1 55.54 ? O GLU 438 A 1 HETATM 5 C CB GLU . . . C 3 38.073 -7.131 8.555 1 55.33 ? CB GLU 438 A 1 HETATM 6 C CG GLU . . . C 3 38.464 -7.832 9.831 1 53.67 ? CG GLU 438 A 1 HETATM 7 C CD GLU . . . C 3 38.133 -9.327 9.774 1 49.76 ? CD GLU 438 A 1 HETATM 8 O OE1 GLU . . . C 3 37.165 -9.725 9.071 1 47.26 ? OE1 GLU 438 A 1 HETATM 9 O OE2 GLU . . . C 3 38.828 -10.091 10.46 1 48.82 ? OE2 GLU 438 A 1 HETATM 10 O OXT GLU . . . C 3 38.16 -5.329 6.333 1 57.1 ? OXT GLU 438 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #