data_3D2O # _model_server_result.job_id TPYAIrl5cbKw2oEtgDiUGA _model_server_result.datetime_utc '2024-11-24 16:02:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":258}' # _entry.id 3D2O # _exptl.entry_id 3D2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D2O _cell.length_a 92.225 _cell.length_b 100.42 _cell.length_c 113.947 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 100.42 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 147 A CYS 147 1_555 C MN MN . A MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A NE2 HIS 159 A HIS 159 1_555 C MN MN . A MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 B SG CYS 147 B CYS 147 1_555 D MN MN . B MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc4 B NE2 HIS 159 B HIS 159 1_555 D MN MN . B MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 D MN MN . B MN 258 1_555 G N1 AZI . B AZI 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc6 D MN MN . B MN 258 1_555 I O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3D2O _atom_sites.fract_transf_matrix[1][1] 0.010843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 258 2 MN MN . D 2 MN B 1 258 1 MN MN . E 3 LI B 1 259 1 LI LI . F 4 CL B 1 260 1 CL CL . G 5 AZI B 1 261 206 AZI AZI . H 6 HOH A 1 259 4 HOH HOH . H 6 HOH A 2 260 5 HOH HOH . H 6 HOH A 3 261 6 HOH HOH . H 6 HOH A 4 262 9 HOH HOH . H 6 HOH A 5 263 15 HOH HOH . H 6 HOH A 6 264 18 HOH HOH . H 6 HOH A 7 265 20 HOH HOH . H 6 HOH A 8 266 24 HOH HOH . H 6 HOH A 9 267 28 HOH HOH . H 6 HOH A 10 268 30 HOH HOH . H 6 HOH A 11 269 32 HOH HOH . H 6 HOH A 12 270 34 HOH HOH . H 6 HOH A 13 271 35 HOH HOH . H 6 HOH A 14 272 37 HOH HOH . H 6 HOH A 15 273 39 HOH HOH . H 6 HOH A 16 274 41 HOH HOH . H 6 HOH A 17 275 43 HOH HOH . H 6 HOH A 18 276 46 HOH HOH . H 6 HOH A 19 277 50 HOH HOH . H 6 HOH A 20 278 51 HOH HOH . H 6 HOH A 21 279 52 HOH HOH . H 6 HOH A 22 280 53 HOH HOH . H 6 HOH A 23 281 55 HOH HOH . H 6 HOH A 24 282 61 HOH HOH . H 6 HOH A 25 283 63 HOH HOH . H 6 HOH A 26 284 75 HOH HOH . H 6 HOH A 27 285 76 HOH HOH . H 6 HOH A 28 286 77 HOH HOH . H 6 HOH A 29 287 80 HOH HOH . H 6 HOH A 30 288 81 HOH HOH . H 6 HOH A 31 289 85 HOH HOH . H 6 HOH A 32 290 87 HOH HOH . H 6 HOH A 33 291 90 HOH HOH . H 6 HOH A 34 292 92 HOH HOH . H 6 HOH A 35 293 94 HOH HOH . H 6 HOH A 36 294 96 HOH HOH . H 6 HOH A 37 295 98 HOH HOH . H 6 HOH A 38 296 101 HOH HOH . H 6 HOH A 39 297 102 HOH HOH . H 6 HOH A 40 298 103 HOH HOH . H 6 HOH A 41 299 104 HOH HOH . H 6 HOH A 42 300 105 HOH HOH . H 6 HOH A 43 301 109 HOH HOH . H 6 HOH A 44 302 110 HOH HOH . H 6 HOH A 45 303 111 HOH HOH . H 6 HOH A 46 304 112 HOH HOH . H 6 HOH A 47 305 115 HOH HOH . H 6 HOH A 48 306 116 HOH HOH . H 6 HOH A 49 307 117 HOH HOH . H 6 HOH A 50 308 119 HOH HOH . H 6 HOH A 51 309 120 HOH HOH . H 6 HOH A 52 310 121 HOH HOH . H 6 HOH A 53 311 126 HOH HOH . H 6 HOH A 54 312 127 HOH HOH . H 6 HOH A 55 313 128 HOH HOH . H 6 HOH A 56 314 129 HOH HOH . H 6 HOH A 57 315 133 HOH HOH . H 6 HOH A 58 316 134 HOH HOH . H 6 HOH A 59 317 137 HOH HOH . H 6 HOH A 60 318 139 HOH HOH . H 6 HOH A 61 319 140 HOH HOH . H 6 HOH A 62 320 143 HOH HOH . H 6 HOH A 63 321 147 HOH HOH . H 6 HOH A 64 322 148 HOH HOH . H 6 HOH A 65 323 150 HOH HOH . H 6 HOH A 66 324 154 HOH HOH . H 6 HOH A 67 325 155 HOH HOH . H 6 HOH A 68 326 157 HOH HOH . H 6 HOH A 69 327 158 HOH HOH . H 6 HOH A 70 328 159 HOH HOH . H 6 HOH A 71 329 160 HOH HOH . H 6 HOH A 72 330 161 HOH HOH . H 6 HOH A 73 331 163 HOH HOH . H 6 HOH A 74 332 165 HOH HOH . H 6 HOH A 75 333 166 HOH HOH . H 6 HOH A 76 334 173 HOH HOH . H 6 HOH A 77 335 175 HOH HOH . H 6 HOH A 78 336 176 HOH HOH . H 6 HOH A 79 337 179 HOH HOH . H 6 HOH A 80 338 183 HOH HOH . H 6 HOH A 81 339 184 HOH HOH . H 6 HOH A 82 340 186 HOH HOH . H 6 HOH A 83 341 190 HOH HOH . H 6 HOH A 84 342 192 HOH HOH . H 6 HOH A 85 343 194 HOH HOH . H 6 HOH A 86 344 195 HOH HOH . H 6 HOH A 87 345 197 HOH HOH . H 6 HOH A 88 346 198 HOH HOH . H 6 HOH A 89 347 203 HOH HOH . H 6 HOH A 90 348 205 HOH HOH . H 6 HOH A 91 349 206 HOH HOH . H 6 HOH A 92 350 207 HOH HOH . H 6 HOH A 93 351 212 HOH HOH . H 6 HOH A 94 352 215 HOH HOH . H 6 HOH A 95 353 216 HOH HOH . H 6 HOH A 96 354 220 HOH HOH . H 6 HOH A 97 355 222 HOH HOH . H 6 HOH A 98 356 224 HOH HOH . H 6 HOH A 99 357 226 HOH HOH . H 6 HOH A 100 358 228 HOH HOH . H 6 HOH A 101 359 233 HOH HOH . H 6 HOH A 102 360 234 HOH HOH . H 6 HOH A 103 361 236 HOH HOH . H 6 HOH A 104 362 237 HOH HOH . H 6 HOH A 105 363 238 HOH HOH . H 6 HOH A 106 364 239 HOH HOH . H 6 HOH A 107 365 241 HOH HOH . H 6 HOH A 108 366 243 HOH HOH . H 6 HOH A 109 367 249 HOH HOH . H 6 HOH A 110 368 254 HOH HOH . H 6 HOH A 111 369 255 HOH HOH . H 6 HOH A 112 370 257 HOH HOH . H 6 HOH A 113 371 258 HOH HOH . H 6 HOH A 114 372 260 HOH HOH . I 6 HOH B 1 262 1 HOH HOH . I 6 HOH B 2 263 2 HOH HOH . I 6 HOH B 3 264 3 HOH HOH . I 6 HOH B 4 265 7 HOH HOH . I 6 HOH B 5 266 8 HOH HOH . I 6 HOH B 6 267 10 HOH HOH . I 6 HOH B 7 268 11 HOH HOH . I 6 HOH B 8 269 12 HOH HOH . I 6 HOH B 9 270 13 HOH HOH . I 6 HOH B 10 271 14 HOH HOH . I 6 HOH B 11 272 16 HOH HOH . I 6 HOH B 12 273 17 HOH HOH . I 6 HOH B 13 274 19 HOH HOH . I 6 HOH B 14 275 21 HOH HOH . I 6 HOH B 15 276 22 HOH HOH . I 6 HOH B 16 277 23 HOH HOH . I 6 HOH B 17 278 25 HOH HOH . I 6 HOH B 18 279 26 HOH HOH . I 6 HOH B 19 280 27 HOH HOH . I 6 HOH B 20 281 29 HOH HOH . I 6 HOH B 21 282 31 HOH HOH . I 6 HOH B 22 283 33 HOH HOH . I 6 HOH B 23 284 36 HOH HOH . I 6 HOH B 24 285 38 HOH HOH . I 6 HOH B 25 286 40 HOH HOH . I 6 HOH B 26 287 42 HOH HOH . I 6 HOH B 27 288 44 HOH HOH . I 6 HOH B 28 289 45 HOH HOH . I 6 HOH B 29 290 47 HOH HOH . I 6 HOH B 30 291 48 HOH HOH . I 6 HOH B 31 292 49 HOH HOH . I 6 HOH B 32 293 54 HOH HOH . I 6 HOH B 33 294 56 HOH HOH . I 6 HOH B 34 295 57 HOH HOH . I 6 HOH B 35 296 58 HOH HOH . I 6 HOH B 36 297 59 HOH HOH . I 6 HOH B 37 298 60 HOH HOH . I 6 HOH B 38 299 62 HOH HOH . I 6 HOH B 39 300 64 HOH HOH . I 6 HOH B 40 301 65 HOH HOH . I 6 HOH B 41 302 66 HOH HOH . I 6 HOH B 42 303 67 HOH HOH . I 6 HOH B 43 304 68 HOH HOH . I 6 HOH B 44 305 69 HOH HOH . I 6 HOH B 45 306 70 HOH HOH . I 6 HOH B 46 307 71 HOH HOH . I 6 HOH B 47 308 72 HOH HOH . I 6 HOH B 48 309 73 HOH HOH . I 6 HOH B 49 310 74 HOH HOH . I 6 HOH B 50 311 78 HOH HOH . I 6 HOH B 51 312 79 HOH HOH . I 6 HOH B 52 313 82 HOH HOH . I 6 HOH B 53 314 83 HOH HOH . I 6 HOH B 54 315 84 HOH HOH . I 6 HOH B 55 316 86 HOH HOH . I 6 HOH B 56 317 88 HOH HOH . I 6 HOH B 57 318 89 HOH HOH . I 6 HOH B 58 319 91 HOH HOH . I 6 HOH B 59 320 93 HOH HOH . I 6 HOH B 60 321 95 HOH HOH . I 6 HOH B 61 322 97 HOH HOH . I 6 HOH B 62 323 99 HOH HOH . I 6 HOH B 63 324 100 HOH HOH . I 6 HOH B 64 325 106 HOH HOH . I 6 HOH B 65 326 107 HOH HOH . I 6 HOH B 66 327 108 HOH HOH . I 6 HOH B 67 328 113 HOH HOH . I 6 HOH B 68 329 114 HOH HOH . I 6 HOH B 69 330 118 HOH HOH . I 6 HOH B 70 331 122 HOH HOH . I 6 HOH B 71 332 123 HOH HOH . I 6 HOH B 72 333 124 HOH HOH . I 6 HOH B 73 334 125 HOH HOH . I 6 HOH B 74 335 130 HOH HOH . I 6 HOH B 75 336 131 HOH HOH . I 6 HOH B 76 337 132 HOH HOH . I 6 HOH B 77 338 135 HOH HOH . I 6 HOH B 78 339 136 HOH HOH . I 6 HOH B 79 340 138 HOH HOH . I 6 HOH B 80 341 141 HOH HOH . I 6 HOH B 81 342 142 HOH HOH . I 6 HOH B 82 343 144 HOH HOH . I 6 HOH B 83 344 145 HOH HOH . I 6 HOH B 84 345 146 HOH HOH . I 6 HOH B 85 346 149 HOH HOH . I 6 HOH B 86 347 151 HOH HOH . I 6 HOH B 87 348 152 HOH HOH . I 6 HOH B 88 349 153 HOH HOH . I 6 HOH B 89 350 156 HOH HOH . I 6 HOH B 90 351 162 HOH HOH . I 6 HOH B 91 352 164 HOH HOH . I 6 HOH B 92 353 167 HOH HOH . I 6 HOH B 93 354 168 HOH HOH . I 6 HOH B 94 355 169 HOH HOH . I 6 HOH B 95 356 170 HOH HOH . I 6 HOH B 96 357 171 HOH HOH . I 6 HOH B 97 358 172 HOH HOH . I 6 HOH B 98 359 174 HOH HOH . I 6 HOH B 99 360 177 HOH HOH . I 6 HOH B 100 361 178 HOH HOH . I 6 HOH B 101 362 180 HOH HOH . I 6 HOH B 102 363 181 HOH HOH . I 6 HOH B 103 364 182 HOH HOH . I 6 HOH B 104 365 185 HOH HOH . I 6 HOH B 105 366 187 HOH HOH . I 6 HOH B 106 367 188 HOH HOH . I 6 HOH B 107 368 189 HOH HOH . I 6 HOH B 108 369 191 HOH HOH . I 6 HOH B 109 370 193 HOH HOH . I 6 HOH B 110 371 196 HOH HOH . I 6 HOH B 111 372 199 HOH HOH . I 6 HOH B 112 373 200 HOH HOH . I 6 HOH B 113 374 201 HOH HOH . I 6 HOH B 114 375 202 HOH HOH . I 6 HOH B 115 376 204 HOH HOH . I 6 HOH B 116 377 208 HOH HOH . I 6 HOH B 117 378 209 HOH HOH . I 6 HOH B 118 379 210 HOH HOH . I 6 HOH B 119 380 211 HOH HOH . I 6 HOH B 120 381 213 HOH HOH . I 6 HOH B 121 382 214 HOH HOH . I 6 HOH B 122 383 217 HOH HOH . I 6 HOH B 123 384 218 HOH HOH . I 6 HOH B 124 385 219 HOH HOH . I 6 HOH B 125 386 221 HOH HOH . I 6 HOH B 126 387 223 HOH HOH . I 6 HOH B 127 388 225 HOH HOH . I 6 HOH B 128 389 227 HOH HOH . I 6 HOH B 129 390 229 HOH HOH . I 6 HOH B 130 391 230 HOH HOH . I 6 HOH B 131 392 231 HOH HOH . I 6 HOH B 132 393 232 HOH HOH . I 6 HOH B 133 394 235 HOH HOH . I 6 HOH B 134 395 240 HOH HOH . I 6 HOH B 135 396 242 HOH HOH . I 6 HOH B 136 397 244 HOH HOH . I 6 HOH B 137 398 245 HOH HOH . I 6 HOH B 138 399 246 HOH HOH . I 6 HOH B 139 400 247 HOH HOH . I 6 HOH B 140 401 248 HOH HOH . I 6 HOH B 141 402 250 HOH HOH . I 6 HOH B 142 403 251 HOH HOH . I 6 HOH B 143 404 252 HOH HOH . I 6 HOH B 144 405 253 HOH HOH . I 6 HOH B 145 406 256 HOH HOH . I 6 HOH B 146 407 259 HOH HOH . I 6 HOH B 147 408 261 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 50.065 _atom_site.Cartn_y 40.444 _atom_site.Cartn_z 1.837 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 258 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 208 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #