data_3D2P # _model_server_result.job_id D4OAR9qpfMXfdf4cmcLl6w _model_server_result.datetime_utc '2024-10-19 00:46:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":438}' # _entry.id 3D2P # _exptl.entry_id 3D2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3D2P _cell.length_a 107.054 _cell.length_b 107.054 _cell.length_c 185.466 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 149 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -53.527 92.711484 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -107.054 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 3D2P _atom_sites.fract_transf_matrix[1][1] 0.009341 _atom_sites.fract_transf_matrix[1][2] 0.005393 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 437 1 COA COA . D 3 ARG A 1 438 1 ARG ARG . E 2 COA B 1 437 1 COA COA . F 3 ARG B 1 438 1 ARG ARG . G 4 HOH A 1 439 4 HOH TIP . G 4 HOH A 2 440 7 HOH TIP . G 4 HOH A 3 441 8 HOH TIP . G 4 HOH A 4 442 10 HOH TIP . G 4 HOH A 5 443 12 HOH TIP . G 4 HOH A 6 444 19 HOH TIP . G 4 HOH A 7 445 20 HOH TIP . G 4 HOH A 8 446 24 HOH TIP . G 4 HOH A 9 447 28 HOH TIP . G 4 HOH A 10 448 32 HOH TIP . G 4 HOH A 11 449 36 HOH TIP . G 4 HOH A 12 450 38 HOH TIP . G 4 HOH A 13 451 40 HOH TIP . G 4 HOH A 14 452 41 HOH TIP . G 4 HOH A 15 453 42 HOH TIP . G 4 HOH A 16 454 45 HOH TIP . G 4 HOH A 17 455 54 HOH TIP . G 4 HOH A 18 456 56 HOH TIP . G 4 HOH A 19 457 57 HOH TIP . G 4 HOH A 20 458 59 HOH TIP . G 4 HOH A 21 459 61 HOH TIP . G 4 HOH A 22 460 62 HOH TIP . G 4 HOH A 23 461 64 HOH TIP . G 4 HOH A 24 462 65 HOH TIP . G 4 HOH A 25 463 66 HOH TIP . G 4 HOH A 26 464 71 HOH TIP . G 4 HOH A 27 465 72 HOH TIP . G 4 HOH A 28 466 73 HOH TIP . G 4 HOH A 29 467 74 HOH TIP . G 4 HOH A 30 468 75 HOH TIP . G 4 HOH A 31 469 76 HOH TIP . G 4 HOH A 32 470 80 HOH TIP . G 4 HOH A 33 471 81 HOH TIP . G 4 HOH A 34 472 87 HOH TIP . G 4 HOH A 35 473 88 HOH TIP . G 4 HOH A 36 474 89 HOH TIP . G 4 HOH A 37 475 90 HOH TIP . G 4 HOH A 38 476 91 HOH TIP . G 4 HOH A 39 477 92 HOH TIP . G 4 HOH A 40 478 94 HOH TIP . G 4 HOH A 41 479 97 HOH TIP . G 4 HOH A 42 480 100 HOH TIP . G 4 HOH A 43 481 101 HOH TIP . G 4 HOH A 44 482 103 HOH TIP . G 4 HOH A 45 483 105 HOH TIP . G 4 HOH A 46 484 106 HOH TIP . G 4 HOH A 47 485 109 HOH TIP . G 4 HOH A 48 486 110 HOH TIP . G 4 HOH A 49 487 113 HOH TIP . G 4 HOH A 50 488 115 HOH TIP . G 4 HOH A 51 489 116 HOH TIP . G 4 HOH A 52 490 118 HOH TIP . G 4 HOH A 53 491 121 HOH TIP . G 4 HOH A 54 492 122 HOH TIP . G 4 HOH A 55 493 127 HOH TIP . G 4 HOH A 56 494 128 HOH TIP . G 4 HOH A 57 495 130 HOH TIP . G 4 HOH A 58 496 132 HOH TIP . G 4 HOH A 59 497 134 HOH TIP . G 4 HOH A 60 498 141 HOH TIP . G 4 HOH A 61 499 147 HOH TIP . G 4 HOH A 62 500 148 HOH TIP . G 4 HOH A 63 501 150 HOH TIP . G 4 HOH A 64 502 152 HOH TIP . G 4 HOH A 65 503 153 HOH TIP . G 4 HOH A 66 504 155 HOH TIP . G 4 HOH A 67 505 162 HOH TIP . G 4 HOH A 68 506 164 HOH TIP . G 4 HOH A 69 507 167 HOH TIP . G 4 HOH A 70 508 169 HOH TIP . G 4 HOH A 71 509 173 HOH TIP . G 4 HOH A 72 510 174 HOH TIP . G 4 HOH A 73 511 178 HOH TIP . G 4 HOH A 74 512 179 HOH TIP . H 4 HOH B 1 439 1 HOH TIP . H 4 HOH B 2 440 2 HOH TIP . H 4 HOH B 3 441 3 HOH TIP . H 4 HOH B 4 442 5 HOH TIP . H 4 HOH B 5 443 6 HOH TIP . H 4 HOH B 6 444 9 HOH TIP . H 4 HOH B 7 445 11 HOH TIP . H 4 HOH B 8 446 13 HOH TIP . H 4 HOH B 9 447 14 HOH TIP . H 4 HOH B 10 448 15 HOH TIP . H 4 HOH B 11 449 16 HOH TIP . H 4 HOH B 12 450 17 HOH TIP . H 4 HOH B 13 451 18 HOH TIP . H 4 HOH B 14 452 21 HOH TIP . H 4 HOH B 15 453 22 HOH TIP . H 4 HOH B 16 454 23 HOH TIP . H 4 HOH B 17 455 25 HOH TIP . H 4 HOH B 18 456 26 HOH TIP . H 4 HOH B 19 457 27 HOH TIP . H 4 HOH B 20 458 29 HOH TIP . H 4 HOH B 21 459 30 HOH TIP . H 4 HOH B 22 460 31 HOH TIP . H 4 HOH B 23 461 33 HOH TIP . H 4 HOH B 24 462 34 HOH TIP . H 4 HOH B 25 463 35 HOH TIP . H 4 HOH B 26 464 37 HOH TIP . H 4 HOH B 27 465 39 HOH TIP . H 4 HOH B 28 466 43 HOH TIP . H 4 HOH B 29 467 44 HOH TIP . H 4 HOH B 30 468 46 HOH TIP . H 4 HOH B 31 469 47 HOH TIP . H 4 HOH B 32 470 48 HOH TIP . H 4 HOH B 33 471 49 HOH TIP . H 4 HOH B 34 472 50 HOH TIP . H 4 HOH B 35 473 51 HOH TIP . H 4 HOH B 36 474 52 HOH TIP . H 4 HOH B 37 475 53 HOH TIP . H 4 HOH B 38 476 55 HOH TIP . H 4 HOH B 39 477 58 HOH TIP . H 4 HOH B 40 478 60 HOH TIP . H 4 HOH B 41 479 63 HOH TIP . H 4 HOH B 42 480 67 HOH TIP . H 4 HOH B 43 481 68 HOH TIP . H 4 HOH B 44 482 69 HOH TIP . H 4 HOH B 45 483 70 HOH TIP . H 4 HOH B 46 484 77 HOH TIP . H 4 HOH B 47 485 78 HOH TIP . H 4 HOH B 48 486 79 HOH TIP . H 4 HOH B 49 487 82 HOH TIP . H 4 HOH B 50 488 83 HOH TIP . H 4 HOH B 51 489 84 HOH TIP . H 4 HOH B 52 490 85 HOH TIP . H 4 HOH B 53 491 86 HOH TIP . H 4 HOH B 54 492 93 HOH TIP . H 4 HOH B 55 493 95 HOH TIP . H 4 HOH B 56 494 96 HOH TIP . H 4 HOH B 57 495 98 HOH TIP . H 4 HOH B 58 496 99 HOH TIP . H 4 HOH B 59 497 102 HOH TIP . H 4 HOH B 60 498 104 HOH TIP . H 4 HOH B 61 499 107 HOH TIP . H 4 HOH B 62 500 108 HOH TIP . H 4 HOH B 63 501 111 HOH TIP . H 4 HOH B 64 502 112 HOH TIP . H 4 HOH B 65 503 114 HOH TIP . H 4 HOH B 66 504 117 HOH TIP . H 4 HOH B 67 505 119 HOH TIP . H 4 HOH B 68 506 120 HOH TIP . H 4 HOH B 69 507 123 HOH TIP . H 4 HOH B 70 508 124 HOH TIP . H 4 HOH B 71 509 125 HOH TIP . H 4 HOH B 72 510 126 HOH TIP . H 4 HOH B 73 511 129 HOH TIP . H 4 HOH B 74 512 131 HOH TIP . H 4 HOH B 75 513 133 HOH TIP . H 4 HOH B 76 514 135 HOH TIP . H 4 HOH B 77 515 136 HOH TIP . H 4 HOH B 78 516 137 HOH TIP . H 4 HOH B 79 517 138 HOH TIP . H 4 HOH B 80 518 139 HOH TIP . H 4 HOH B 81 519 140 HOH TIP . H 4 HOH B 82 520 142 HOH TIP . H 4 HOH B 83 521 143 HOH TIP . H 4 HOH B 84 522 144 HOH TIP . H 4 HOH B 85 523 145 HOH TIP . H 4 HOH B 86 524 146 HOH TIP . H 4 HOH B 87 525 149 HOH TIP . H 4 HOH B 88 526 151 HOH TIP . H 4 HOH B 89 527 154 HOH TIP . H 4 HOH B 90 528 156 HOH TIP . H 4 HOH B 91 529 157 HOH TIP . H 4 HOH B 92 530 158 HOH TIP . H 4 HOH B 93 531 159 HOH TIP . H 4 HOH B 94 532 160 HOH TIP . H 4 HOH B 95 533 161 HOH TIP . H 4 HOH B 96 534 163 HOH TIP . H 4 HOH B 97 535 165 HOH TIP . H 4 HOH B 98 536 166 HOH TIP . H 4 HOH B 99 537 168 HOH TIP . H 4 HOH B 100 538 170 HOH TIP . H 4 HOH B 101 539 171 HOH TIP . H 4 HOH B 102 540 172 HOH TIP . H 4 HOH B 103 541 175 HOH TIP . H 4 HOH B 104 542 176 HOH TIP . H 4 HOH B 105 543 177 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . F 3 -53.728 -2.598 58.59 1 33.78 ? N ARG 438 B 1 HETATM 2 C CA ARG . . . F 3 -53.436 -2.081 59.954 1 33.64 ? CA ARG 438 B 1 HETATM 3 C C ARG . . . F 3 -52.164 -1.236 59.982 1 34.66 ? C ARG 438 B 1 HETATM 4 O O ARG . . . F 3 -51.389 -1.175 58.997 1 35.18 ? O ARG 438 B 1 HETATM 5 C CB ARG . . . F 3 -53.356 -3.217 60.978 1 33.47 ? CB ARG 438 B 1 HETATM 6 C CG ARG . . . F 3 -52.056 -4.019 60.96 1 32.78 ? CG ARG 438 B 1 HETATM 7 C CD ARG . . . F 3 -52.058 -5.102 62.035 1 32.3 ? CD ARG 438 B 1 HETATM 8 N NE ARG . . . F 3 -50.783 -5.803 62.032 1 32.51 ? NE ARG 438 B 1 HETATM 9 C CZ ARG . . . F 3 -50.402 -6.732 62.908 1 29.69 ? CZ ARG 438 B 1 HETATM 10 N NH1 ARG . . . F 3 -51.214 -7.108 63.896 1 26.03 ? NH1 ARG 438 B 1 HETATM 11 N NH2 ARG . . . F 3 -49.192 -7.271 62.784 1 26.94 ? NH2 ARG 438 B 1 HETATM 12 O OXT ARG . . . F 3 -51.903 -0.588 61.01 1 34.92 ? OXT ARG 438 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #