data_3D2W # _model_server_result.job_id j_Ka6Ae96jBhFtOGbcC8ow _model_server_result.datetime_utc '2024-12-26 22:11:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":11}' # _entry.id 3D2W # _exptl.entry_id 3D2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D2W _cell.length_a 41.283 _cell.length_b 87.29 _cell.length_c 125.345 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? octameric 8 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 20.6415 0 62.6725 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 41.283 0 0 4 'crystal symmetry operation' 9_455 x-1/2,y,z+1/2 1 0 0 0 1 0 0 0 1 -20.6415 0 62.6725 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog TYPE_11_PAIR hydrog1 B N6 DA 5 B DA 5 1_555 B N3 DG 8 B DG 8 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog2 B N7 DA 5 B DA 5 1_555 B N2 DG 8 B DG 8 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 6 B DG 6 1_555 B N3 DC 7 B DC 7 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 6 B DG 6 1_555 B O2 DC 7 B DC 7 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 6 B DG 6 1_555 B N4 DC 7 B DC 7 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 7 B DC 7 1_555 B N1 DG 6 B DG 6 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 7 B DC 7 1_555 B O6 DG 6 B DG 6 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 7 B DC 7 1_555 B N2 DG 6 B DG 6 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog9 B N2 DG 8 B DG 8 1_555 B N7 DA 5 B DA 5 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog10 B N3 DG 8 B DG 8 1_555 B N6 DA 5 B DA 5 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 409 n n P O2 PO4 sing 410 n n P O3 PO4 sing 411 n n P O4 PO4 sing 412 n n # _atom_sites.entry_id 3D2W _atom_sites.fract_transf_matrix[1][1] 0.024223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 B 1 11 1 PO4 PO4 . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 3 3 HOH HOH . D 4 HOH A 4 4 4 HOH HOH . D 4 HOH A 5 5 5 HOH HOH . D 4 HOH A 6 6 6 HOH HOH . D 4 HOH A 7 7 7 HOH HOH . D 4 HOH A 8 8 8 HOH HOH . D 4 HOH A 9 9 9 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 11 11 HOH HOH . D 4 HOH A 12 12 12 HOH HOH . D 4 HOH A 13 13 13 HOH HOH . D 4 HOH A 14 14 14 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 23 23 HOH HOH . D 4 HOH A 22 24 24 HOH HOH . D 4 HOH A 23 25 25 HOH HOH . D 4 HOH A 24 26 26 HOH HOH . D 4 HOH A 25 27 27 HOH HOH . D 4 HOH A 26 28 28 HOH HOH . D 4 HOH A 27 29 29 HOH HOH . D 4 HOH A 28 30 30 HOH HOH . D 4 HOH A 29 32 32 HOH HOH . D 4 HOH A 30 33 33 HOH HOH . D 4 HOH A 31 34 34 HOH HOH . D 4 HOH A 32 35 35 HOH HOH . D 4 HOH A 33 36 36 HOH HOH . D 4 HOH A 34 37 37 HOH HOH . D 4 HOH A 35 38 38 HOH HOH . D 4 HOH A 36 39 39 HOH HOH . D 4 HOH A 37 40 40 HOH HOH . D 4 HOH A 38 41 41 HOH HOH . D 4 HOH A 39 42 42 HOH HOH . D 4 HOH A 40 43 43 HOH HOH . D 4 HOH A 41 44 44 HOH HOH . D 4 HOH A 42 45 45 HOH HOH . D 4 HOH A 43 46 46 HOH HOH . D 4 HOH A 44 47 47 HOH HOH . D 4 HOH A 45 48 48 HOH HOH . D 4 HOH A 46 49 49 HOH HOH . D 4 HOH A 47 50 50 HOH HOH . D 4 HOH A 48 52 52 HOH HOH . D 4 HOH A 49 54 54 HOH HOH . D 4 HOH A 50 57 57 HOH HOH . D 4 HOH A 51 58 58 HOH HOH . D 4 HOH A 52 59 59 HOH HOH . D 4 HOH A 53 60 60 HOH HOH . D 4 HOH A 54 61 61 HOH HOH . D 4 HOH A 55 62 62 HOH HOH . D 4 HOH A 56 63 63 HOH HOH . D 4 HOH A 57 64 64 HOH HOH . D 4 HOH A 58 65 65 HOH HOH . D 4 HOH A 59 66 66 HOH HOH . D 4 HOH A 60 67 67 HOH HOH . D 4 HOH A 61 68 68 HOH HOH . D 4 HOH A 62 69 69 HOH HOH . D 4 HOH A 63 70 70 HOH HOH . D 4 HOH A 64 71 71 HOH HOH . D 4 HOH A 65 72 72 HOH HOH . D 4 HOH A 66 73 73 HOH HOH . D 4 HOH A 67 74 74 HOH HOH . D 4 HOH A 68 75 75 HOH HOH . D 4 HOH A 69 76 76 HOH HOH . D 4 HOH A 70 77 77 HOH HOH . D 4 HOH A 71 78 78 HOH HOH . D 4 HOH A 72 79 79 HOH HOH . D 4 HOH A 73 80 80 HOH HOH . D 4 HOH A 74 81 81 HOH HOH . D 4 HOH A 75 82 82 HOH HOH . D 4 HOH A 76 83 83 HOH HOH . D 4 HOH A 77 84 84 HOH HOH . D 4 HOH A 78 86 86 HOH HOH . D 4 HOH A 79 87 87 HOH HOH . D 4 HOH A 80 88 88 HOH HOH . D 4 HOH A 81 89 89 HOH HOH . D 4 HOH A 82 92 92 HOH HOH . D 4 HOH A 83 95 95 HOH HOH . D 4 HOH A 84 96 96 HOH HOH . D 4 HOH A 85 97 97 HOH HOH . D 4 HOH A 86 98 98 HOH HOH . D 4 HOH A 87 100 100 HOH HOH . D 4 HOH A 88 101 101 HOH HOH . D 4 HOH A 89 102 102 HOH HOH . D 4 HOH A 90 103 103 HOH HOH . D 4 HOH A 91 104 104 HOH HOH . D 4 HOH A 92 105 105 HOH HOH . D 4 HOH A 93 107 107 HOH HOH . D 4 HOH A 94 108 108 HOH HOH . D 4 HOH A 95 109 109 HOH HOH . D 4 HOH A 96 110 110 HOH HOH . D 4 HOH A 97 111 111 HOH HOH . D 4 HOH A 98 112 112 HOH HOH . D 4 HOH A 99 113 113 HOH HOH . D 4 HOH A 100 114 114 HOH HOH . D 4 HOH A 101 116 116 HOH HOH . E 4 HOH B 1 15 15 HOH HOH . E 4 HOH B 2 22 22 HOH HOH . E 4 HOH B 3 31 31 HOH HOH . E 4 HOH B 4 51 51 HOH HOH . E 4 HOH B 5 53 53 HOH HOH . E 4 HOH B 6 55 55 HOH HOH . E 4 HOH B 7 56 56 HOH HOH . E 4 HOH B 8 85 85 HOH HOH . E 4 HOH B 9 90 90 HOH HOH . E 4 HOH B 10 91 91 HOH HOH . E 4 HOH B 11 93 93 HOH HOH . E 4 HOH B 12 94 94 HOH HOH . E 4 HOH B 13 99 99 HOH HOH . E 4 HOH B 14 106 106 HOH HOH . E 4 HOH B 15 115 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 12.859 24.089 21.419 1 35.77 ? P PO4 11 B 1 HETATM 2 O O1 PO4 . . . C 3 11.397 23.986 21.072 1 36.4 ? O1 PO4 11 B 1 HETATM 3 O O2 PO4 . . . C 3 13.023 23.78 22.899 1 34.33 ? O2 PO4 11 B 1 HETATM 4 O O3 PO4 . . . C 3 13.59 23.048 20.604 1 36.23 ? O3 PO4 11 B 1 HETATM 5 O O4 PO4 . . . C 3 13.352 25.484 21.075 1 34.85 ? O4 PO4 11 B 1 # _model_server_stats.io_time_ms 110 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #