data_3D3E
#
_model_server_result.job_id            4KGVCfaFlQAhfacwDfLZUw 
_model_server_result.datetime_utc      '2024-11-29 14:22:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":293}' 
#
_entry.id    3D3E 
#
_exptl.entry_id    3D3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              432.479 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-cyclopropyl-N-(trans-4-pyridin-3-ylcyclohexyl)-4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]benzamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.11 
_cell.angle_gamma         90 
_cell.entry_id            3D3E 
_cell.length_a            56.7 
_cell.length_b            152.846 
_cell.length_c            73.708 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C24 H27 F3 N2 O2' 
_chem_comp.formula_weight    432.479 
_chem_comp.id                D3E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-cyclopropyl-N-(trans-4-pyridin-3-ylcyclohexyl)-4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F25 C21 D3E sing 83 n n 
C21 F23 D3E sing 84 n n 
C21 F24 D3E sing 85 n n 
C21 C2 D3E sing 86 n n 
C2 C1 D3E sing 87 n n 
C2 O22 D3E sing 88 n n 
C2 C3 D3E sing 89 n n 
C3 C8 D3E doub 90 n y 
C3 C4 D3E sing 91 n y 
C8 C7 D3E sing 92 n y 
C7 C6 D3E doub 93 n y 
C6 C5 D3E sing 94 n y 
C6 C9 D3E sing 95 n n 
C5 C4 D3E doub 96 n y 
C9 O11 D3E doub 97 n n 
C9 N10 D3E sing 98 n n 
N10 C12 D3E sing 99 n n 
N10 C15 D3E sing 100 n n 
C12 C14 D3E sing 101 n n 
C12 C13 D3E sing 102 n n 
C14 C13 D3E sing 103 n n 
C15 C20 D3E sing 104 n n 
C15 C16 D3E sing 105 n n 
C20 C19 D3E sing 106 n n 
C19 C18 D3E sing 107 n n 
C18 C17 D3E sing 108 n n 
C18 C26 D3E sing 109 n n 
C17 C16 D3E sing 110 n n 
C26 C31 D3E doub 111 n y 
C26 C27 D3E sing 112 n y 
C31 C30 D3E sing 113 n y 
C30 C29 D3E doub 114 n y 
C29 N28 D3E sing 115 n y 
N28 C27 D3E doub 116 n y 
C1 H1 D3E sing 117 n n 
C1 H1A D3E sing 118 n n 
C1 H1B D3E sing 119 n n 
O22 HO22 D3E sing 120 n n 
C8 H8 D3E sing 121 n n 
C7 H7 D3E sing 122 n n 
C5 H5 D3E sing 123 n n 
C4 H4 D3E sing 124 n n 
C12 H12 D3E sing 125 n n 
C14 H14 D3E sing 126 n n 
C14 H14A D3E sing 127 n n 
C13 H13 D3E sing 128 n n 
C13 H13A D3E sing 129 n n 
C15 H15 D3E sing 130 n n 
C20 H20 D3E sing 131 n n 
C20 H20A D3E sing 132 n n 
C19 H19 D3E sing 133 n n 
C19 H19A D3E sing 134 n n 
C18 H18 D3E sing 135 n n 
C17 H17 D3E sing 136 n n 
C17 H17A D3E sing 137 n n 
C16 H16 D3E sing 138 n n 
C16 H16A D3E sing 139 n n 
C31 H31 D3E sing 140 n n 
C30 H30 D3E sing 141 n n 
C29 H29 D3E sing 142 n n 
C27 H27 D3E sing 143 n n 
#
_atom_sites.entry_id                     3D3E 
_atom_sites.fract_transf_matrix[1][1]    0.017637 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00065 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 1 1 NAP NAP . 
F 3 D3E A 1 293 293 D3E D3E . 
G 2 NAP B 1 2 2 NAP NAP . 
H 3 D3E B 1 293 293 D3E D3E . 
I 2 NAP C 1 3 3 NAP NAP . 
J 3 D3E C 1 293 293 D3E D3E . 
K 2 NAP D 1 4 4 NAP NAP . 
L 3 D3E D 1 293 293 D3E D3E . 
M 4 HOH A 1 294 294 HOH HOH . 
M 4 HOH A 2 295 295 HOH HOH . 
M 4 HOH A 3 296 296 HOH HOH . 
M 4 HOH A 4 297 297 HOH HOH . 
M 4 HOH A 5 298 298 HOH HOH . 
M 4 HOH A 6 299 299 HOH HOH . 
M 4 HOH A 7 300 300 HOH HOH . 
M 4 HOH A 8 301 301 HOH HOH . 
M 4 HOH A 9 302 302 HOH HOH . 
M 4 HOH A 10 303 303 HOH HOH . 
N 4 HOH B 1 294 294 HOH HOH . 
N 4 HOH B 2 295 295 HOH HOH . 
N 4 HOH B 3 296 296 HOH HOH . 
N 4 HOH B 4 297 297 HOH HOH . 
N 4 HOH B 5 298 298 HOH HOH . 
N 4 HOH B 6 299 299 HOH HOH . 
N 4 HOH B 7 300 300 HOH HOH . 
N 4 HOH B 8 302 302 HOH HOH . 
N 4 HOH B 9 303 303 HOH HOH . 
N 4 HOH B 10 304 304 HOH HOH . 
N 4 HOH B 11 305 305 HOH HOH . 
N 4 HOH B 12 307 307 HOH HOH . 
N 4 HOH B 13 308 308 HOH HOH . 
N 4 HOH B 14 309 309 HOH HOH . 
N 4 HOH B 15 310 310 HOH HOH . 
N 4 HOH B 16 311 311 HOH HOH . 
N 4 HOH B 17 312 312 HOH HOH . 
N 4 HOH B 18 313 313 HOH HOH . 
N 4 HOH B 19 314 314 HOH HOH . 
O 4 HOH C 1 294 294 HOH HOH . 
O 4 HOH C 2 295 295 HOH HOH . 
O 4 HOH C 3 296 296 HOH HOH . 
O 4 HOH C 4 299 299 HOH HOH . 
O 4 HOH C 5 300 300 HOH HOH . 
O 4 HOH C 6 301 301 HOH HOH . 
O 4 HOH C 7 302 302 HOH HOH . 
O 4 HOH C 8 303 303 HOH HOH . 
O 4 HOH C 9 304 304 HOH HOH . 
O 4 HOH C 10 305 305 HOH HOH . 
O 4 HOH C 11 306 306 HOH HOH . 
O 4 HOH C 12 307 307 HOH HOH . 
P 4 HOH D 1 294 294 HOH HOH . 
P 4 HOH D 2 295 295 HOH HOH . 
P 4 HOH D 3 296 296 HOH HOH . 
P 4 HOH D 4 297 297 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F25 D3E . . . J 3 -23.055 43.855 4.188 1 74.27 ? F25 D3E 293 C 1 
HETATM 2 C C21 D3E . . . J 3 -23.583 44.288 5.323 1 74.42 ? C21 D3E 293 C 1 
HETATM 3 F F23 D3E . . . J 3 -24.537 43.451 5.693 1 74.53 ? F23 D3E 293 C 1 
HETATM 4 F F24 D3E . . . J 3 -24.1 45.494 5.123 1 74.65 ? F24 D3E 293 C 1 
HETATM 5 C C2 D3E . . . J 3 -22.562 44.374 6.499 1 73.76 ? C2 D3E 293 C 1 
HETATM 6 C C1 D3E . . . J 3 -21.527 45.492 6.325 1 73.5 ? C1 D3E 293 C 1 
HETATM 7 O O22 D3E . . . J 3 -23.391 44.703 7.594 1 73.9 ? O22 D3E 293 C 1 
HETATM 8 C C3 D3E . . . J 3 -21.891 43.042 6.763 1 73.25 ? C3 D3E 293 C 1 
HETATM 9 C C8 D3E . . . J 3 -20.812 42.644 5.985 1 73.07 ? C8 D3E 293 C 1 
HETATM 10 C C7 D3E . . . J 3 -20.194 41.425 6.218 1 73.3 ? C7 D3E 293 C 1 
HETATM 11 C C6 D3E . . . J 3 -20.641 40.586 7.227 1 73.73 ? C6 D3E 293 C 1 
HETATM 12 C C5 D3E . . . J 3 -21.72 40.974 8.009 1 73.34 ? C5 D3E 293 C 1 
HETATM 13 C C4 D3E . . . J 3 -22.339 42.196 7.777 1 73.27 ? C4 D3E 293 C 1 
HETATM 14 C C9 D3E . . . J 3 -19.972 39.297 7.47 1 74.34 ? C9 D3E 293 C 1 
HETATM 15 O O11 D3E . . . J 3 -18.838 39.265 7.942 1 73.93 ? O11 D3E 293 C 1 
HETATM 16 N N10 D3E . . . J 3 -20.66 38.135 7.152 1 74.83 ? N10 D3E 293 C 1 
HETATM 17 C C12 D3E . . . J 3 -20.881 37.162 8.184 1 74.57 ? C12 D3E 293 C 1 
HETATM 18 C C14 D3E . . . J 3 -19.554 36.905 8.827 1 74.52 ? C14 D3E 293 C 1 
HETATM 19 C C13 D3E . . . J 3 -19.988 36.055 7.704 1 74.54 ? C13 D3E 293 C 1 
HETATM 20 C C15 D3E . . . J 3 -21.505 38.088 5.928 1 75.45 ? C15 D3E 293 C 1 
HETATM 21 C C20 D3E . . . J 3 -22.687 37.119 6.156 1 75.98 ? C20 D3E 293 C 1 
HETATM 22 C C19 D3E . . . J 3 -23.58 36.984 4.915 1 76.3 ? C19 D3E 293 C 1 
HETATM 23 C C18 D3E . . . J 3 -22.728 36.566 3.713 1 76.68 ? C18 D3E 293 C 1 
HETATM 24 C C17 D3E . . . J 3 -21.654 37.629 3.453 1 76.28 ? C17 D3E 293 C 1 
HETATM 25 C C16 D3E . . . J 3 -20.72 37.698 4.666 1 75.96 ? C16 D3E 293 C 1 
HETATM 26 C C26 D3E . . . J 3 -23.551 36.283 2.484 1 77.32 ? C26 D3E 293 C 1 
HETATM 27 C C31 D3E . . . J 3 -24.378 37.246 1.928 1 77.71 ? C31 D3E 293 C 1 
HETATM 28 C C30 D3E . . . J 3 -25.11 36.942 0.793 1 77.7 ? C30 D3E 293 C 1 
HETATM 29 C C29 D3E . . . J 3 -24.98 35.675 0.243 1 77.87 ? C29 D3E 293 C 1 
HETATM 30 N N28 D3E . . . J 3 -24.188 34.729 0.755 1 77.95 ? N28 D3E 293 C 1 
HETATM 31 C C27 D3E . . . J 3 -23.49 35.04 1.854 1 77.7 ? C27 D3E 293 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#