data_3D3F # _model_server_result.job_id A1qAbUg9YluBihhGDfwtHg _model_server_result.datetime_utc '2025-02-05 07:53:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3D3F # _exptl.entry_id 3D3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D3F _cell.length_a 80.517 _cell.length_b 123.285 _cell.length_c 57.226 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 3D3F _atom_sites.fract_transf_matrix[1][1] 0.01242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 1 1 NDP NDP . D 2 NDP B 1 1 1 NDP NDP . E 3 HOH A 1 277 277 HOH HOH . E 3 HOH A 2 278 278 HOH HOH . E 3 HOH A 3 279 279 HOH HOH . E 3 HOH A 4 280 280 HOH HOH . E 3 HOH A 5 281 281 HOH HOH . E 3 HOH A 6 282 282 HOH HOH . E 3 HOH A 7 283 283 HOH HOH . E 3 HOH A 8 284 284 HOH HOH . E 3 HOH A 9 285 285 HOH HOH . E 3 HOH A 10 286 286 HOH HOH . E 3 HOH A 11 287 287 HOH HOH . E 3 HOH A 12 289 289 HOH HOH . E 3 HOH A 13 290 290 HOH HOH . E 3 HOH A 14 291 291 HOH HOH . E 3 HOH A 15 292 292 HOH HOH . E 3 HOH A 16 293 293 HOH HOH . E 3 HOH A 17 294 294 HOH HOH . E 3 HOH A 18 295 295 HOH HOH . E 3 HOH A 19 296 296 HOH HOH . E 3 HOH A 20 297 297 HOH HOH . E 3 HOH A 21 298 298 HOH HOH . E 3 HOH A 22 299 299 HOH HOH . E 3 HOH A 23 300 300 HOH HOH . E 3 HOH A 24 301 301 HOH HOH . E 3 HOH A 25 302 302 HOH HOH . E 3 HOH A 26 303 303 HOH HOH . E 3 HOH A 27 304 304 HOH HOH . E 3 HOH A 28 305 305 HOH HOH . E 3 HOH A 29 306 306 HOH HOH . E 3 HOH A 30 307 307 HOH HOH . E 3 HOH A 31 308 308 HOH HOH . E 3 HOH A 32 309 309 HOH HOH . E 3 HOH A 33 310 310 HOH HOH . E 3 HOH A 34 311 311 HOH HOH . E 3 HOH A 35 312 312 HOH HOH . E 3 HOH A 36 313 313 HOH HOH . E 3 HOH A 37 314 314 HOH HOH . E 3 HOH A 38 315 315 HOH HOH . E 3 HOH A 39 316 316 HOH HOH . E 3 HOH A 40 317 317 HOH HOH . E 3 HOH A 41 318 318 HOH HOH . F 3 HOH B 1 288 288 HOH HOH . F 3 HOH B 2 289 289 HOH HOH . F 3 HOH B 3 290 290 HOH HOH . F 3 HOH B 4 291 291 HOH HOH . F 3 HOH B 5 292 292 HOH HOH . F 3 HOH B 6 293 293 HOH HOH . F 3 HOH B 7 294 294 HOH HOH . F 3 HOH B 8 295 295 HOH HOH . F 3 HOH B 9 296 296 HOH HOH . F 3 HOH B 10 297 297 HOH HOH . F 3 HOH B 11 298 298 HOH HOH . F 3 HOH B 12 299 299 HOH HOH . F 3 HOH B 13 300 300 HOH HOH . F 3 HOH B 14 301 301 HOH HOH . F 3 HOH B 15 302 302 HOH HOH . F 3 HOH B 16 303 303 HOH HOH . F 3 HOH B 17 304 304 HOH HOH . F 3 HOH B 18 305 305 HOH HOH . F 3 HOH B 19 306 306 HOH HOH . F 3 HOH B 20 307 307 HOH HOH . F 3 HOH B 21 308 308 HOH HOH . F 3 HOH B 22 309 309 HOH HOH . F 3 HOH B 23 310 310 HOH HOH . F 3 HOH B 24 311 311 HOH HOH . F 3 HOH B 25 312 312 HOH HOH . F 3 HOH B 26 313 313 HOH HOH . F 3 HOH B 27 314 314 HOH HOH . F 3 HOH B 28 315 315 HOH HOH . F 3 HOH B 29 316 316 HOH HOH . F 3 HOH B 30 317 317 HOH HOH . F 3 HOH B 31 318 318 HOH HOH . F 3 HOH B 32 319 319 HOH HOH . F 3 HOH B 33 320 320 HOH HOH . F 3 HOH B 34 321 321 HOH HOH . F 3 HOH B 35 322 322 HOH HOH . F 3 HOH B 36 323 323 HOH HOH . F 3 HOH B 37 324 324 HOH HOH . F 3 HOH B 38 325 325 HOH HOH . F 3 HOH B 39 326 326 HOH HOH . F 3 HOH B 40 327 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 2 -19.581 36.396 1.647 1 10.24 ? PA NDP 1 B 1 HETATM 2 O O1A NDP . . . D 2 -20.407 37.61 1.393 1 8.39 ? O1A NDP 1 B 1 HETATM 3 O O2A NDP . . . D 2 -18.132 36.672 1.864 1 5.24 ? O2A NDP 1 B 1 HETATM 4 O O5B NDP . . . D 2 -20.214 35.588 2.87 1 9.76 ? O5B NDP 1 B 1 HETATM 5 C C5B NDP . . . D 2 -21.184 34.603 2.631 1 9.15 ? C5B NDP 1 B 1 HETATM 6 C C4B NDP . . . D 2 -21.321 33.67 3.831 1 10.05 ? C4B NDP 1 B 1 HETATM 7 O O4B NDP . . . D 2 -21.464 34.39 5.034 1 10.21 ? O4B NDP 1 B 1 HETATM 8 C C3B NDP . . . D 2 -22.584 32.854 3.683 1 11.32 ? C3B NDP 1 B 1 HETATM 9 O O3B NDP . . . D 2 -22.208 31.537 4.006 1 11.37 ? O3B NDP 1 B 1 HETATM 10 C C2B NDP . . . D 2 -23.593 33.473 4.641 1 13.06 ? C2B NDP 1 B 1 HETATM 11 O O2B NDP . . . D 2 -24.556 32.56 5.117 1 11.09 ? O2B NDP 1 B 1 HETATM 12 C C1B NDP . . . D 2 -22.568 33.819 5.705 1 14.27 ? C1B NDP 1 B 1 HETATM 13 N N9A NDP . . . D 2 -22.898 34.472 7.02 1 17.29 ? N9A NDP 1 B 1 HETATM 14 C C8A NDP . . . D 2 -22.719 33.736 8.207 1 16.37 ? C8A NDP 1 B 1 HETATM 15 N N7A NDP . . . D 2 -23.005 34.532 9.261 1 16.5 ? N7A NDP 1 B 1 HETATM 16 C C5A NDP . . . D 2 -23.354 35.748 8.778 1 15.93 ? C5A NDP 1 B 1 HETATM 17 C C6A NDP . . . D 2 -23.727 36.87 9.49 1 14.55 ? C6A NDP 1 B 1 HETATM 18 N N6A NDP . . . D 2 -23.555 36.785 10.814 1 15.2 ? N6A NDP 1 B 1 HETATM 19 N N1A NDP . . . D 2 -24.053 38.044 8.808 1 13.51 ? N1A NDP 1 B 1 HETATM 20 C C2A NDP . . . D 2 -23.997 38.012 7.409 1 15.46 ? C2A NDP 1 B 1 HETATM 21 N N3A NDP . . . D 2 -23.616 36.87 6.69 1 14.25 ? N3A NDP 1 B 1 HETATM 22 C C4A NDP . . . D 2 -23.296 35.748 7.37 1 14.27 ? C4A NDP 1 B 1 HETATM 23 O O3 NDP . . . D 2 -19.933 35.374 0.432 1 12.23 ? O3 NDP 1 B 1 HETATM 24 P PN NDP . . . D 2 -19.675 35.538 -1.161 1 13.72 ? PN NDP 1 B 1 HETATM 25 O O1N NDP . . . D 2 -18.541 36.391 -1.541 1 16.92 ? O1N NDP 1 B 1 HETATM 26 O O2N NDP . . . D 2 -19.754 34.197 -1.796 1 19.49 ? O2N NDP 1 B 1 HETATM 27 O O5D NDP . . . D 2 -20.819 36.482 -1.701 1 14.71 ? O5D NDP 1 B 1 HETATM 28 C C5D NDP . . . D 2 -20.328 37.793 -1.99 1 11.97 ? C5D NDP 1 B 1 HETATM 29 C C4D NDP . . . D 2 -20.819 38.209 -3.359 1 12.93 ? C4D NDP 1 B 1 HETATM 30 O O4D NDP . . . D 2 -19.764 38.642 -4.199 1 11.02 ? O4D NDP 1 B 1 HETATM 31 C C3D NDP . . . D 2 -21.352 36.984 -4.06 1 11.65 ? C3D NDP 1 B 1 HETATM 32 O O3D NDP . . . D 2 -22.597 36.568 -3.53 1 13.08 ? O3D NDP 1 B 1 HETATM 33 C C2D NDP . . . D 2 -21.262 37.382 -5.515 1 11.21 ? C2D NDP 1 B 1 HETATM 34 O O2D NDP . . . D 2 -22.201 38.368 -5.792 1 8.92 ? O2D NDP 1 B 1 HETATM 35 C C1D NDP . . . D 2 -19.937 38.115 -5.508 1 11.4 ? C1D NDP 1 B 1 HETATM 36 N N1N NDP . . . D 2 -18.851 37.17 -5.86 1 12.75 ? N1N NDP 1 B 1 HETATM 37 C C2N NDP . . . D 2 -18.171 37.399 -7.022 1 13.88 ? C2N NDP 1 B 1 HETATM 38 C C3N NDP . . . D 2 -17.078 36.641 -7.434 1 10.91 ? C3N NDP 1 B 1 HETATM 39 C C7N NDP . . . D 2 -16.399 36.909 -8.749 1 8.73 ? C7N NDP 1 B 1 HETATM 40 O O7N NDP . . . D 2 -15.646 35.852 -9.237 1 6.6 ? O7N NDP 1 B 1 HETATM 41 N N7N NDP . . . D 2 -16.559 38.052 -9.423 1 6.44 ? N7N NDP 1 B 1 HETATM 42 C C4N NDP . . . D 2 -16.591 35.511 -6.596 1 9.73 ? C4N NDP 1 B 1 HETATM 43 C C5N NDP . . . D 2 -17.384 35.378 -5.339 1 9.63 ? C5N NDP 1 B 1 HETATM 44 C C6N NDP . . . D 2 -18.461 36.161 -5.03 1 9.29 ? C6N NDP 1 B 1 HETATM 45 P P2B NDP . . . D 2 -26.144 32.706 4.806 1 15.47 ? P2B NDP 1 B 1 HETATM 46 O O1X NDP . . . D 2 -26.285 33.176 3.35 1 12.44 ? O1X NDP 1 B 1 HETATM 47 O O2X NDP . . . D 2 -26.786 31.308 4.954 1 11.77 ? O2X NDP 1 B 1 HETATM 48 O O3X NDP . . . D 2 -26.83 33.683 5.764 1 13.19 ? O3X NDP 1 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #