data_3D3O # _model_server_result.job_id co51bbqYojzv8pGXeYmrPQ _model_server_result.datetime_utc '2024-11-14 11:26:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":177}' # _entry.id 3D3O # _exptl.entry_id 3D3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D3O _cell.length_a 60.382 _cell.length_b 71.681 _cell.length_c 96.222 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 18 A HIS 15 1_555 A N MSE 19 A MSE 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 19 A MSE 16 1_555 A N GLU 20 A GLU 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C THR 60 A THR 57 1_555 A N MSE 61 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 A C MSE 61 A MSE 58 1_555 A N SER 62 A SER 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C TRP 66 A TRP 63 1_555 A N MSE 67 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 67 A MSE 64 1_555 A N LEU 68 A LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 A C LEU 68 A LEU 65 1_555 A N MSE 69 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 69 A MSE 66 1_555 A N SER 70 A SER 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 A C THR 71 A THR 68 1_555 A N MSE 72 A MSE 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale10 A C MSE 72 A MSE 69 1_555 A N ASN 73 A ASN 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 A C ASP 99 A ASP 96 1_555 A N MSE 100 A MSE 97 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale12 A C ASP 99 A ASP 96 1_555 A N MSE 100 A MSE 97 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 A C MSE 100 A MSE 97 1_555 A N MSE 101 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 A C MSE 101 A MSE 98 1_555 A N ALA 102 A ALA 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C PRO 131 A PRO 128 1_555 A N MSE 132 A MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale16 A C MSE 132 A MSE 129 1_555 A N THR 133 A THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 A C THR 140 A THR 137 1_555 A N MSE 141 A MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale18 A C MSE 141 A MSE 138 1_555 A N GLY 142 A GLY 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 B C HIS 18 B HIS 15 1_555 B N MSE 19 B MSE 16 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.338 ? covale ? covale20 B C HIS 18 B HIS 15 1_555 B N MSE 19 B MSE 16 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.333 ? covale ? covale21 B C MSE 19 B MSE 16 1_555 B N GLU 20 B GLU 17 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 B C MSE 19 B MSE 16 1_555 B N GLU 20 B GLU 17 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale23 B C THR 60 B THR 57 1_555 B N MSE 61 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale24 B C MSE 61 B MSE 58 1_555 B N SER 62 B SER 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 B C TRP 66 B TRP 63 1_555 B N MSE 67 B MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale26 B C MSE 67 B MSE 64 1_555 B N LEU 68 B LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 B C LEU 68 B LEU 65 1_555 B N MSE 69 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale28 B C MSE 69 B MSE 66 1_555 B N SER 70 B SER 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale29 B C THR 71 B THR 68 1_555 B N MSE 72 B MSE 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale30 B C MSE 72 B MSE 69 1_555 B N ASN 73 B ASN 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale31 B C ASP 99 B ASP 96 1_555 B N MSE 100 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale32 B C MSE 100 B MSE 97 1_555 B N MSE 101 B MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale33 B C MSE 101 B MSE 98 1_555 B N ALA 102 B ALA 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale34 B C PRO 131 B PRO 128 1_555 B N MSE 132 B MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale35 B C MSE 132 B MSE 129 1_555 B N THR 133 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale36 B C THR 140 B THR 137 1_555 B N MSE 141 B MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale37 B C MSE 141 B MSE 138 1_555 B N GLY 142 B GLY 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 294 n n S O2 SO4 doub 295 n n S O3 SO4 sing 296 n n S O4 SO4 sing 297 n n # _atom_sites.entry_id 3D3O _atom_sites.fract_transf_matrix[1][1] 0.016561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 176 1 SO4 SO4 . D 2 SO4 A 1 177 2 SO4 SO4 . E 2 SO4 B 1 176 3 SO4 SO4 . F 2 SO4 B 1 177 4 SO4 SO4 . G 2 SO4 B 1 178 5 SO4 SO4 . H 3 NH4 B 1 179 6 NH4 NH4 . I 4 HOH A 1 178 2 HOH HOH . I 4 HOH A 2 179 3 HOH HOH . I 4 HOH A 3 180 5 HOH HOH . I 4 HOH A 4 181 6 HOH HOH . I 4 HOH A 5 182 7 HOH HOH . I 4 HOH A 6 183 9 HOH HOH . I 4 HOH A 7 184 11 HOH HOH . I 4 HOH A 8 185 13 HOH HOH . I 4 HOH A 9 186 15 HOH HOH . I 4 HOH A 10 187 17 HOH HOH . I 4 HOH A 11 188 28 HOH HOH . I 4 HOH A 12 189 33 HOH HOH . I 4 HOH A 13 190 34 HOH HOH . I 4 HOH A 14 191 35 HOH HOH . I 4 HOH A 15 192 37 HOH HOH . I 4 HOH A 16 193 38 HOH HOH . I 4 HOH A 17 194 40 HOH HOH . I 4 HOH A 18 195 41 HOH HOH . I 4 HOH A 19 196 42 HOH HOH . I 4 HOH A 20 197 43 HOH HOH . I 4 HOH A 21 198 44 HOH HOH . I 4 HOH A 22 199 46 HOH HOH . I 4 HOH A 23 200 47 HOH HOH . I 4 HOH A 24 201 48 HOH HOH . I 4 HOH A 25 202 50 HOH HOH . I 4 HOH A 26 203 53 HOH HOH . I 4 HOH A 27 204 56 HOH HOH . I 4 HOH A 28 205 60 HOH HOH . I 4 HOH A 29 206 63 HOH HOH . I 4 HOH A 30 207 66 HOH HOH . I 4 HOH A 31 208 67 HOH HOH . I 4 HOH A 32 209 73 HOH HOH . I 4 HOH A 33 210 80 HOH HOH . I 4 HOH A 34 211 81 HOH HOH . I 4 HOH A 35 212 84 HOH HOH . I 4 HOH A 36 213 87 HOH HOH . I 4 HOH A 37 214 90 HOH HOH . I 4 HOH A 38 215 95 HOH HOH . I 4 HOH A 39 216 104 HOH HOH . J 4 HOH B 1 180 1 HOH HOH . J 4 HOH B 2 181 4 HOH HOH . J 4 HOH B 3 182 8 HOH HOH . J 4 HOH B 4 183 10 HOH HOH . J 4 HOH B 5 184 12 HOH HOH . J 4 HOH B 6 185 14 HOH HOH . J 4 HOH B 7 186 16 HOH HOH . J 4 HOH B 8 187 18 HOH HOH . J 4 HOH B 9 188 19 HOH HOH . J 4 HOH B 10 189 20 HOH HOH . J 4 HOH B 11 190 21 HOH HOH . J 4 HOH B 12 191 22 HOH HOH . J 4 HOH B 13 192 23 HOH HOH . J 4 HOH B 14 193 24 HOH HOH . J 4 HOH B 15 194 25 HOH HOH . J 4 HOH B 16 195 26 HOH HOH . J 4 HOH B 17 196 27 HOH HOH . J 4 HOH B 18 197 29 HOH HOH . J 4 HOH B 19 198 30 HOH HOH . J 4 HOH B 20 199 31 HOH HOH . J 4 HOH B 21 200 32 HOH HOH . J 4 HOH B 22 201 36 HOH HOH . J 4 HOH B 23 202 39 HOH HOH . J 4 HOH B 24 203 45 HOH HOH . J 4 HOH B 25 204 49 HOH HOH . J 4 HOH B 26 205 51 HOH HOH . J 4 HOH B 27 206 52 HOH HOH . J 4 HOH B 28 207 54 HOH HOH . J 4 HOH B 29 208 55 HOH HOH . J 4 HOH B 30 209 57 HOH HOH . J 4 HOH B 31 210 58 HOH HOH . J 4 HOH B 32 211 59 HOH HOH . J 4 HOH B 33 212 61 HOH HOH . J 4 HOH B 34 213 62 HOH HOH . J 4 HOH B 35 214 64 HOH HOH . J 4 HOH B 36 215 65 HOH HOH . J 4 HOH B 37 216 68 HOH HOH . J 4 HOH B 38 217 69 HOH HOH . J 4 HOH B 39 218 70 HOH HOH . J 4 HOH B 40 219 71 HOH HOH . J 4 HOH B 41 220 72 HOH HOH . J 4 HOH B 42 221 74 HOH HOH . J 4 HOH B 43 222 75 HOH HOH . J 4 HOH B 44 223 76 HOH HOH . J 4 HOH B 45 224 77 HOH HOH . J 4 HOH B 46 225 78 HOH HOH . J 4 HOH B 47 226 79 HOH HOH . J 4 HOH B 48 227 82 HOH HOH . J 4 HOH B 49 228 83 HOH HOH . J 4 HOH B 50 229 85 HOH HOH . J 4 HOH B 51 230 86 HOH HOH . J 4 HOH B 52 231 88 HOH HOH . J 4 HOH B 53 232 89 HOH HOH . J 4 HOH B 54 233 91 HOH HOH . J 4 HOH B 55 234 92 HOH HOH . J 4 HOH B 56 235 93 HOH HOH . J 4 HOH B 57 236 94 HOH HOH . J 4 HOH B 58 237 96 HOH HOH . J 4 HOH B 59 238 97 HOH HOH . J 4 HOH B 60 239 98 HOH HOH . J 4 HOH B 61 240 99 HOH HOH . J 4 HOH B 62 241 100 HOH HOH . J 4 HOH B 63 242 101 HOH HOH . J 4 HOH B 64 243 102 HOH HOH . J 4 HOH B 65 244 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 30.36 35.136 66.236 1 97.4 ? S SO4 177 A 1 HETATM 2 O O1 SO4 . . . D 2 31.603 35.571 66.858 1 98.11 ? O1 SO4 177 A 1 HETATM 3 O O2 SO4 . . . D 2 30.043 36.018 65.113 1 96.19 ? O2 SO4 177 A 1 HETATM 4 O O3 SO4 . . . D 2 30.553 33.744 65.799 1 98.06 ? O3 SO4 177 A 1 HETATM 5 O O4 SO4 . . . D 2 29.265 35.235 67.198 1 97.41 ? O4 SO4 177 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #