data_3D3Y # _model_server_result.job_id PuKjye5fA0W8HtE3tJOz1w _model_server_result.datetime_utc '2024-11-05 01:01:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":430}' # _entry.id 3D3Y # _exptl.entry_id 3D3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D3Y _cell.length_a 122.437 _cell.length_b 122.437 _cell.length_c 69.003 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N SER 5 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LEU 49 A LEU 46 1_555 A N MSE 50 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C MSE 50 A MSE 47 1_555 A N GLU 51 A GLU 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C SER 91 A SER 88 1_555 A N MSE 92 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 A C MSE 92 A MSE 89 1_555 A N ASN 93 A ASN 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C LYS 194 A LYS 191 1_555 A N MSE 195 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 A C MSE 195 A MSE 192 1_555 A N LEU 196 A LEU 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C PHE 291 A PHE 288 1_555 A N MSE 292 A MSE 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 292 A MSE 289 1_555 A N ASN 293 A ASN 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale11 A C PHE 314 A PHE 311 1_555 A N MSE 315 A MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale12 A C MSE 315 A MSE 312 1_555 A N THR 316 A THR 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C ALA 355 A ALA 352 1_555 A N MSE 356 A MSE 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 356 A MSE 353 1_555 A N LEU 357 A LEU 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 A C LEU 380 A LEU 377 1_555 A N MSE 381 A MSE 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 A C MSE 381 A MSE 378 1_555 A N PRO 382 A PRO 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale17 A C THR 384 A THR 381 1_555 A N MSE 385 A MSE 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale18 A C MSE 385 A MSE 382 1_555 A N LEU 386 A LEU 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 76 n n C1 C2 EDO sing 77 n n C1 H11 EDO sing 78 n n C1 H12 EDO sing 79 n n O1 HO1 EDO sing 80 n n C2 O2 EDO sing 81 n n C2 H21 EDO sing 82 n n C2 H22 EDO sing 83 n n O2 HO2 EDO sing 84 n n # _atom_sites.entry_id 3D3Y _atom_sites.fract_transf_matrix[1][1] 0.008167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 423 1 ACT ACT . C 2 ACT A 1 424 2 ACT ACT . D 2 ACT A 1 425 3 ACT ACT . E 2 ACT A 1 426 4 ACT ACT . F 3 EDO A 1 427 1 EDO EDO . G 3 EDO A 1 428 2 EDO EDO . H 3 EDO A 1 429 3 EDO EDO . I 3 EDO A 1 430 4 EDO EDO . J 4 HOH A 1 431 1 HOH HOH . J 4 HOH A 2 432 2 HOH HOH . J 4 HOH A 3 433 3 HOH HOH . J 4 HOH A 4 434 4 HOH HOH . J 4 HOH A 5 435 5 HOH HOH . J 4 HOH A 6 436 6 HOH HOH . J 4 HOH A 7 437 7 HOH HOH . J 4 HOH A 8 438 8 HOH HOH . J 4 HOH A 9 439 9 HOH HOH . J 4 HOH A 10 440 10 HOH HOH . J 4 HOH A 11 441 11 HOH HOH . J 4 HOH A 12 442 12 HOH HOH . J 4 HOH A 13 443 13 HOH HOH . J 4 HOH A 14 444 14 HOH HOH . J 4 HOH A 15 445 15 HOH HOH . J 4 HOH A 16 446 16 HOH HOH . J 4 HOH A 17 447 17 HOH HOH . J 4 HOH A 18 448 18 HOH HOH . J 4 HOH A 19 449 19 HOH HOH . J 4 HOH A 20 450 20 HOH HOH . J 4 HOH A 21 451 21 HOH HOH . J 4 HOH A 22 452 22 HOH HOH . J 4 HOH A 23 453 23 HOH HOH . J 4 HOH A 24 454 24 HOH HOH . J 4 HOH A 25 455 25 HOH HOH . J 4 HOH A 26 456 26 HOH HOH . J 4 HOH A 27 457 27 HOH HOH . J 4 HOH A 28 458 28 HOH HOH . J 4 HOH A 29 459 29 HOH HOH . J 4 HOH A 30 460 30 HOH HOH . J 4 HOH A 31 461 31 HOH HOH . J 4 HOH A 32 462 32 HOH HOH . J 4 HOH A 33 463 33 HOH HOH . J 4 HOH A 34 464 34 HOH HOH . J 4 HOH A 35 465 35 HOH HOH . J 4 HOH A 36 466 36 HOH HOH . J 4 HOH A 37 467 37 HOH HOH . J 4 HOH A 38 468 38 HOH HOH . J 4 HOH A 39 469 39 HOH HOH . J 4 HOH A 40 470 40 HOH HOH . J 4 HOH A 41 471 41 HOH HOH . J 4 HOH A 42 472 42 HOH HOH . J 4 HOH A 43 473 43 HOH HOH . J 4 HOH A 44 474 44 HOH HOH . J 4 HOH A 45 475 45 HOH HOH . J 4 HOH A 46 476 46 HOH HOH . J 4 HOH A 47 477 47 HOH HOH . J 4 HOH A 48 478 48 HOH HOH . J 4 HOH A 49 479 49 HOH HOH . J 4 HOH A 50 480 50 HOH HOH . J 4 HOH A 51 481 51 HOH HOH . J 4 HOH A 52 482 52 HOH HOH . J 4 HOH A 53 483 53 HOH HOH . J 4 HOH A 54 484 54 HOH HOH . J 4 HOH A 55 485 55 HOH HOH . J 4 HOH A 56 486 56 HOH HOH . J 4 HOH A 57 487 57 HOH HOH . J 4 HOH A 58 488 58 HOH HOH . J 4 HOH A 59 489 59 HOH HOH . J 4 HOH A 60 490 60 HOH HOH . J 4 HOH A 61 491 61 HOH HOH . J 4 HOH A 62 492 62 HOH HOH . J 4 HOH A 63 493 63 HOH HOH . J 4 HOH A 64 494 64 HOH HOH . J 4 HOH A 65 495 65 HOH HOH . J 4 HOH A 66 496 66 HOH HOH . J 4 HOH A 67 497 67 HOH HOH . J 4 HOH A 68 498 68 HOH HOH . J 4 HOH A 69 499 69 HOH HOH . J 4 HOH A 70 500 70 HOH HOH . J 4 HOH A 71 501 71 HOH HOH . J 4 HOH A 72 502 72 HOH HOH . J 4 HOH A 73 503 73 HOH HOH . J 4 HOH A 74 504 74 HOH HOH . J 4 HOH A 75 505 75 HOH HOH . J 4 HOH A 76 506 76 HOH HOH . J 4 HOH A 77 507 77 HOH HOH . J 4 HOH A 78 508 78 HOH HOH . J 4 HOH A 79 509 79 HOH HOH . J 4 HOH A 80 510 80 HOH HOH . J 4 HOH A 81 511 81 HOH HOH . J 4 HOH A 82 512 82 HOH HOH . J 4 HOH A 83 513 83 HOH HOH . J 4 HOH A 84 514 84 HOH HOH . J 4 HOH A 85 515 85 HOH HOH . J 4 HOH A 86 516 86 HOH HOH . J 4 HOH A 87 517 87 HOH HOH . J 4 HOH A 88 518 88 HOH HOH . J 4 HOH A 89 519 89 HOH HOH . J 4 HOH A 90 520 90 HOH HOH . J 4 HOH A 91 521 91 HOH HOH . J 4 HOH A 92 522 92 HOH HOH . J 4 HOH A 93 523 93 HOH HOH . J 4 HOH A 94 524 94 HOH HOH . J 4 HOH A 95 525 95 HOH HOH . J 4 HOH A 96 526 96 HOH HOH . J 4 HOH A 97 527 97 HOH HOH . J 4 HOH A 98 528 98 HOH HOH . J 4 HOH A 99 529 99 HOH HOH . J 4 HOH A 100 530 100 HOH HOH . J 4 HOH A 101 531 101 HOH HOH . J 4 HOH A 102 532 102 HOH HOH . J 4 HOH A 103 533 103 HOH HOH . J 4 HOH A 104 534 104 HOH HOH . J 4 HOH A 105 535 105 HOH HOH . J 4 HOH A 106 536 106 HOH HOH . J 4 HOH A 107 537 107 HOH HOH . J 4 HOH A 108 538 108 HOH HOH . J 4 HOH A 109 539 109 HOH HOH . J 4 HOH A 110 540 110 HOH HOH . J 4 HOH A 111 541 111 HOH HOH . J 4 HOH A 112 542 112 HOH HOH . J 4 HOH A 113 543 113 HOH HOH . J 4 HOH A 114 544 114 HOH HOH . J 4 HOH A 115 545 115 HOH HOH . J 4 HOH A 116 546 116 HOH HOH . J 4 HOH A 117 547 117 HOH HOH . J 4 HOH A 118 548 118 HOH HOH . J 4 HOH A 119 549 119 HOH HOH . J 4 HOH A 120 550 120 HOH HOH . J 4 HOH A 121 551 121 HOH HOH . J 4 HOH A 122 552 122 HOH HOH . J 4 HOH A 123 553 123 HOH HOH . J 4 HOH A 124 554 124 HOH HOH . J 4 HOH A 125 555 125 HOH HOH . J 4 HOH A 126 556 126 HOH HOH . J 4 HOH A 127 557 127 HOH HOH . J 4 HOH A 128 558 128 HOH HOH . J 4 HOH A 129 559 129 HOH HOH . J 4 HOH A 130 560 130 HOH HOH . J 4 HOH A 131 561 131 HOH HOH . J 4 HOH A 132 562 132 HOH HOH . J 4 HOH A 133 563 133 HOH HOH . J 4 HOH A 134 564 134 HOH HOH . J 4 HOH A 135 565 135 HOH HOH . J 4 HOH A 136 566 136 HOH HOH . J 4 HOH A 137 567 137 HOH HOH . J 4 HOH A 138 568 138 HOH HOH . J 4 HOH A 139 569 139 HOH HOH . J 4 HOH A 140 570 140 HOH HOH . J 4 HOH A 141 571 141 HOH HOH . J 4 HOH A 142 572 142 HOH HOH . J 4 HOH A 143 573 143 HOH HOH . J 4 HOH A 144 574 144 HOH HOH . J 4 HOH A 145 575 145 HOH HOH . J 4 HOH A 146 576 146 HOH HOH . J 4 HOH A 147 577 147 HOH HOH . J 4 HOH A 148 578 148 HOH HOH . J 4 HOH A 149 579 149 HOH HOH . J 4 HOH A 150 580 150 HOH HOH . J 4 HOH A 151 581 151 HOH HOH . J 4 HOH A 152 582 152 HOH HOH . J 4 HOH A 153 583 153 HOH HOH . J 4 HOH A 154 584 154 HOH HOH . J 4 HOH A 155 585 155 HOH HOH . J 4 HOH A 156 586 156 HOH HOH . J 4 HOH A 157 587 157 HOH HOH . J 4 HOH A 158 588 158 HOH HOH . J 4 HOH A 159 589 159 HOH HOH . J 4 HOH A 160 590 160 HOH HOH . J 4 HOH A 161 591 161 HOH HOH . J 4 HOH A 162 592 162 HOH HOH . J 4 HOH A 163 593 163 HOH HOH . J 4 HOH A 164 594 164 HOH HOH . J 4 HOH A 165 595 165 HOH HOH . J 4 HOH A 166 596 166 HOH HOH . J 4 HOH A 167 597 167 HOH HOH . J 4 HOH A 168 598 168 HOH HOH . J 4 HOH A 169 599 169 HOH HOH . J 4 HOH A 170 600 170 HOH HOH . J 4 HOH A 171 601 171 HOH HOH . J 4 HOH A 172 602 172 HOH HOH . J 4 HOH A 173 603 173 HOH HOH . J 4 HOH A 174 604 174 HOH HOH . J 4 HOH A 175 605 175 HOH HOH . J 4 HOH A 176 606 176 HOH HOH . J 4 HOH A 177 607 177 HOH HOH . J 4 HOH A 178 608 178 HOH HOH . J 4 HOH A 179 609 179 HOH HOH . J 4 HOH A 180 610 180 HOH HOH . J 4 HOH A 181 611 181 HOH HOH . J 4 HOH A 182 612 182 HOH HOH . J 4 HOH A 183 613 183 HOH HOH . J 4 HOH A 184 614 184 HOH HOH . J 4 HOH A 185 615 185 HOH HOH . J 4 HOH A 186 616 186 HOH HOH . J 4 HOH A 187 617 187 HOH HOH . J 4 HOH A 188 618 188 HOH HOH . J 4 HOH A 189 619 189 HOH HOH . J 4 HOH A 190 620 190 HOH HOH . J 4 HOH A 191 621 191 HOH HOH . J 4 HOH A 192 622 192 HOH HOH . J 4 HOH A 193 623 193 HOH HOH . J 4 HOH A 194 624 194 HOH HOH . J 4 HOH A 195 625 195 HOH HOH . J 4 HOH A 196 626 196 HOH HOH . J 4 HOH A 197 627 197 HOH HOH . J 4 HOH A 198 628 198 HOH HOH . J 4 HOH A 199 629 199 HOH HOH . J 4 HOH A 200 630 200 HOH HOH . J 4 HOH A 201 631 201 HOH HOH . J 4 HOH A 202 632 202 HOH HOH . J 4 HOH A 203 633 203 HOH HOH . J 4 HOH A 204 634 204 HOH HOH . J 4 HOH A 205 635 205 HOH HOH . J 4 HOH A 206 636 206 HOH HOH . J 4 HOH A 207 637 207 HOH HOH . J 4 HOH A 208 638 208 HOH HOH . J 4 HOH A 209 639 209 HOH HOH . J 4 HOH A 210 640 210 HOH HOH . J 4 HOH A 211 641 211 HOH HOH . J 4 HOH A 212 642 212 HOH HOH . J 4 HOH A 213 643 213 HOH HOH . J 4 HOH A 214 644 214 HOH HOH . J 4 HOH A 215 645 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 8.426 51.07 -14.112 1 46.43 ? C1 EDO 430 A 1 HETATM 2 O O1 EDO . . . I 3 9.79 51.047 -14.497 1 45.18 ? O1 EDO 430 A 1 HETATM 3 C C2 EDO . . . I 3 7.67 50.016 -14.897 1 48.13 ? C2 EDO 430 A 1 HETATM 4 O O2 EDO . . . I 3 6.292 50.217 -14.597 1 49.87 ? O2 EDO 430 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #