data_3D41
#
_model_server_result.job_id            0FQW1ipz0k3BAE7T-dSUCw 
_model_server_result.datetime_utc      '2025-03-04 08:31:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d41 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":4001}' 
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_entry.id    3D41 
#
_exptl.entry_id    3D41 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              138.059 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            FOSFOMYCIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3D41 
_cell.length_a            85.656 
_cell.length_b            85.656 
_cell.length_c            78.979 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3D41 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MG MG . A MG 267 1_555 C O2G ANP . A ANP 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc2 B MG MG . A MG 267 1_555 C O2A ANP . A ANP 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc3 B MG MG . A MG 267 1_555 C O1B ANP . A ANP 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc4 B MG MG . A MG 267 1_555 E O HOH . A HOH 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc5 B MG MG . A MG 267 1_555 E O HOH . A HOH 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc6 B MG MG . A MG 267 1_555 E O HOH . A HOH 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
#
_chem_comp.formula           'C3 H7 O4 P' 
_chem_comp.formula_weight    138.059 
_chem_comp.id                FCN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              FOSFOMYCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,2-EPOXYPROPYLPHOSPHONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 FCN sing 133 n n 
C1 O FCN sing 134 n n 
C1 P FCN sing 135 n n 
C1 H1 FCN sing 136 n n 
C2 C3 FCN sing 137 n n 
C2 O FCN sing 138 n n 
C2 H2 FCN sing 139 n n 
C3 H31 FCN sing 140 n n 
C3 H32 FCN sing 141 n n 
C3 H33 FCN sing 142 n n 
P O1P FCN doub 143 n n 
P O2P FCN sing 144 n n 
P O3P FCN sing 145 n n 
O2P HOP2 FCN sing 146 n n 
O3P HOP3 FCN sing 147 n n 
#
_atom_sites.entry_id                     3D41 
_atom_sites.fract_transf_matrix[1][1]    0.011675 
_atom_sites.fract_transf_matrix[1][2]    0.00674 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012662 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 267 26 MG MG . 
C 3 ANP A 1 1260 1260 ANP ANP . 
D 4 FCN A 1 4001 4001 FCN FCN . 
E 5 HOH A 1 4002 1 HOH HOH . 
E 5 HOH A 2 4003 2 HOH HOH . 
E 5 HOH A 3 4004 3 HOH HOH . 
E 5 HOH A 4 4005 4 HOH HOH . 
E 5 HOH A 5 4006 5 HOH HOH . 
E 5 HOH A 6 4007 6 HOH HOH . 
E 5 HOH A 7 4008 7 HOH HOH . 
E 5 HOH A 8 4009 8 HOH HOH . 
E 5 HOH A 9 4010 9 HOH HOH . 
E 5 HOH A 10 4011 10 HOH HOH . 
E 5 HOH A 11 4012 11 HOH HOH . 
E 5 HOH A 12 4013 12 HOH HOH . 
E 5 HOH A 13 4014 13 HOH HOH . 
E 5 HOH A 14 4015 14 HOH HOH . 
E 5 HOH A 15 4016 15 HOH HOH . 
E 5 HOH A 16 4017 16 HOH HOH . 
E 5 HOH A 17 4018 17 HOH HOH . 
E 5 HOH A 18 4019 18 HOH HOH . 
E 5 HOH A 19 4020 19 HOH HOH . 
E 5 HOH A 20 4021 20 HOH HOH . 
E 5 HOH A 21 4022 21 HOH HOH . 
E 5 HOH A 22 4023 22 HOH HOH . 
E 5 HOH A 23 4024 23 HOH HOH . 
E 5 HOH A 24 4025 24 HOH HOH . 
E 5 HOH A 25 4026 25 HOH HOH . 
E 5 HOH A 26 4027 26 HOH HOH . 
E 5 HOH A 27 4028 27 HOH HOH . 
E 5 HOH A 28 4029 28 HOH HOH . 
E 5 HOH A 29 4030 29 HOH HOH . 
E 5 HOH A 30 4031 30 HOH HOH . 
E 5 HOH A 31 4032 31 HOH HOH . 
E 5 HOH A 32 4033 32 HOH HOH . 
E 5 HOH A 33 4034 33 HOH HOH . 
E 5 HOH A 34 4035 34 HOH HOH . 
E 5 HOH A 35 4036 35 HOH HOH . 
E 5 HOH A 36 4037 36 HOH HOH . 
E 5 HOH A 37 4038 37 HOH HOH . 
E 5 HOH A 38 4039 38 HOH HOH . 
E 5 HOH A 39 4040 39 HOH HOH . 
E 5 HOH A 40 4041 40 HOH HOH . 
E 5 HOH A 41 4042 41 HOH HOH . 
E 5 HOH A 42 4043 42 HOH HOH . 
E 5 HOH A 43 4044 43 HOH HOH . 
E 5 HOH A 44 4045 44 HOH HOH . 
E 5 HOH A 45 4046 45 HOH HOH . 
E 5 HOH A 46 4047 46 HOH HOH . 
E 5 HOH A 47 4048 47 HOH HOH . 
E 5 HOH A 48 4049 48 HOH HOH . 
E 5 HOH A 49 4050 49 HOH HOH . 
E 5 HOH A 50 4051 50 HOH HOH . 
E 5 HOH A 51 4052 51 HOH HOH . 
E 5 HOH A 52 4053 52 HOH HOH . 
E 5 HOH A 53 4054 53 HOH HOH . 
E 5 HOH A 54 4055 54 HOH HOH . 
E 5 HOH A 55 4056 55 HOH HOH . 
E 5 HOH A 56 4057 56 HOH HOH . 
E 5 HOH A 57 4058 57 HOH HOH . 
E 5 HOH A 58 4059 58 HOH HOH . 
E 5 HOH A 59 4060 59 HOH HOH . 
E 5 HOH A 60 4061 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FCN . . . D 4 24.975 12.229 -1.738 1 39.56 ? C1 FCN 4001 A 1 
HETATM 2 C C2 FCN . . . D 4 24.201 13.134 -2.713 1 40.23 ? C2 FCN 4001 A 1 
HETATM 3 C C3 FCN . . . D 4 24.371 14.649 -2.57 1 39 ? C3 FCN 4001 A 1 
HETATM 4 O O FCN . . . D 4 23.584 12.525 -1.573 1 40.27 ? O FCN 4001 A 1 
HETATM 5 P P FCN . . . D 4 25.775 12.745 -0.189 1 40.18 ? P FCN 4001 A 1 
HETATM 6 O O1P FCN . . . D 4 25.44 14.152 0.208 1 41.12 ? O1P FCN 4001 A 1 
HETATM 7 O O2P FCN . . . D 4 25.213 11.748 0.786 1 38.22 ? O2P FCN 4001 A 1 
HETATM 8 O O3P FCN . . . D 4 27.225 12.622 -0.494 1 37.02 ? O3P FCN 4001 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
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