data_3D44 # _model_server_result.job_id DzXRj-85M8STLxq4PVIqag _model_server_result.datetime_utc '2024-11-04 22:42:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3D44 # _exptl.entry_id 3D44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.89 _cell.angle_gamma 90 _cell.entry_id 3D44 _cell.length_a 119.072 _cell.length_b 38.88 _cell.length_c 83.698 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 3 B GLU 184 1_555 B N PTR 4 B PTR 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C PTR 4 B PTR 185 1_555 B N VAL 5 B VAL 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3D44 _atom_sites.fract_transf_matrix[1][1] 0.008398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005856 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 2 2 CL CL . D 3 CL A 1 3 3 CL CL . E 3 CL A 1 4 4 CL CL . F 4 GOL A 1 1 1 GOL GOL . G 5 HOH A 1 340 2 HOH HOH . G 5 HOH A 2 341 3 HOH HOH . G 5 HOH A 3 342 4 HOH HOH . G 5 HOH A 4 343 5 HOH HOH . G 5 HOH A 5 344 6 HOH HOH . G 5 HOH A 6 345 7 HOH HOH . G 5 HOH A 7 346 8 HOH HOH . G 5 HOH A 8 347 9 HOH HOH . G 5 HOH A 9 348 10 HOH HOH . G 5 HOH A 10 349 11 HOH HOH . G 5 HOH A 11 350 12 HOH HOH . G 5 HOH A 12 351 13 HOH HOH . G 5 HOH A 13 352 14 HOH HOH . G 5 HOH A 14 353 15 HOH HOH . G 5 HOH A 15 354 16 HOH HOH . G 5 HOH A 16 355 17 HOH HOH . G 5 HOH A 17 356 18 HOH HOH . G 5 HOH A 18 357 19 HOH HOH . G 5 HOH A 19 358 20 HOH HOH . G 5 HOH A 20 359 21 HOH HOH . G 5 HOH A 21 360 22 HOH HOH . G 5 HOH A 22 361 23 HOH HOH . G 5 HOH A 23 362 24 HOH HOH . G 5 HOH A 24 363 25 HOH HOH . G 5 HOH A 25 364 26 HOH HOH . G 5 HOH A 26 365 27 HOH HOH . G 5 HOH A 27 366 28 HOH HOH . G 5 HOH A 28 367 29 HOH HOH . G 5 HOH A 29 368 30 HOH HOH . G 5 HOH A 30 369 31 HOH HOH . G 5 HOH A 31 370 32 HOH HOH . G 5 HOH A 32 371 33 HOH HOH . G 5 HOH A 33 372 34 HOH HOH . G 5 HOH A 34 373 35 HOH HOH . G 5 HOH A 35 374 36 HOH HOH . G 5 HOH A 36 375 37 HOH HOH . G 5 HOH A 37 376 38 HOH HOH . G 5 HOH A 38 377 39 HOH HOH . G 5 HOH A 39 378 40 HOH HOH . G 5 HOH A 40 379 41 HOH HOH . G 5 HOH A 41 380 42 HOH HOH . G 5 HOH A 42 381 43 HOH HOH . G 5 HOH A 43 382 44 HOH HOH . G 5 HOH A 44 383 45 HOH HOH . G 5 HOH A 45 384 46 HOH HOH . G 5 HOH A 46 385 47 HOH HOH . G 5 HOH A 47 386 48 HOH HOH . G 5 HOH A 48 387 49 HOH HOH . G 5 HOH A 49 388 50 HOH HOH . G 5 HOH A 50 389 51 HOH HOH . G 5 HOH A 51 390 52 HOH HOH . G 5 HOH A 52 391 53 HOH HOH . G 5 HOH A 53 392 54 HOH HOH . G 5 HOH A 54 393 55 HOH HOH . G 5 HOH A 55 394 56 HOH HOH . G 5 HOH A 56 395 57 HOH HOH . G 5 HOH A 57 396 58 HOH HOH . G 5 HOH A 58 397 59 HOH HOH . G 5 HOH A 59 398 60 HOH HOH . G 5 HOH A 60 399 61 HOH HOH . G 5 HOH A 61 400 62 HOH HOH . G 5 HOH A 62 401 63 HOH HOH . G 5 HOH A 63 402 64 HOH HOH . G 5 HOH A 64 403 65 HOH HOH . G 5 HOH A 65 404 66 HOH HOH . G 5 HOH A 66 405 67 HOH HOH . G 5 HOH A 67 406 68 HOH HOH . G 5 HOH A 68 407 69 HOH HOH . G 5 HOH A 69 408 70 HOH HOH . G 5 HOH A 70 409 71 HOH HOH . G 5 HOH A 71 410 72 HOH HOH . G 5 HOH A 72 411 73 HOH HOH . G 5 HOH A 73 412 74 HOH HOH . G 5 HOH A 74 413 75 HOH HOH . G 5 HOH A 75 414 76 HOH HOH . G 5 HOH A 76 415 77 HOH HOH . G 5 HOH A 77 416 78 HOH HOH . G 5 HOH A 78 417 79 HOH HOH . G 5 HOH A 79 418 80 HOH HOH . G 5 HOH A 80 419 81 HOH HOH . G 5 HOH A 81 420 82 HOH HOH . G 5 HOH A 82 421 83 HOH HOH . G 5 HOH A 83 422 84 HOH HOH . G 5 HOH A 84 423 85 HOH HOH . G 5 HOH A 85 424 86 HOH HOH . G 5 HOH A 86 425 87 HOH HOH . G 5 HOH A 87 426 88 HOH HOH . G 5 HOH A 88 427 89 HOH HOH . G 5 HOH A 89 428 90 HOH HOH . G 5 HOH A 90 429 91 HOH HOH . G 5 HOH A 91 430 92 HOH HOH . G 5 HOH A 92 431 93 HOH HOH . G 5 HOH A 93 432 94 HOH HOH . G 5 HOH A 94 433 95 HOH HOH . G 5 HOH A 95 434 96 HOH HOH . G 5 HOH A 96 435 97 HOH HOH . G 5 HOH A 97 436 98 HOH HOH . G 5 HOH A 98 437 99 HOH HOH . G 5 HOH A 99 438 100 HOH HOH . G 5 HOH A 100 439 101 HOH HOH . G 5 HOH A 101 440 102 HOH HOH . G 5 HOH A 102 441 103 HOH HOH . G 5 HOH A 103 442 104 HOH HOH . G 5 HOH A 104 443 105 HOH HOH . G 5 HOH A 105 444 106 HOH HOH . G 5 HOH A 106 445 107 HOH HOH . G 5 HOH A 107 446 108 HOH HOH . G 5 HOH A 108 447 109 HOH HOH . G 5 HOH A 109 448 110 HOH HOH . G 5 HOH A 110 449 111 HOH HOH . G 5 HOH A 111 450 112 HOH HOH . G 5 HOH A 112 451 113 HOH HOH . G 5 HOH A 113 452 114 HOH HOH . G 5 HOH A 114 453 115 HOH HOH . G 5 HOH A 115 454 116 HOH HOH . G 5 HOH A 116 455 117 HOH HOH . G 5 HOH A 117 456 118 HOH HOH . G 5 HOH A 118 457 119 HOH HOH . G 5 HOH A 119 458 120 HOH HOH . G 5 HOH A 120 459 121 HOH HOH . G 5 HOH A 121 460 122 HOH HOH . G 5 HOH A 122 461 123 HOH HOH . G 5 HOH A 123 462 124 HOH HOH . G 5 HOH A 124 463 125 HOH HOH . G 5 HOH A 125 464 126 HOH HOH . G 5 HOH A 126 465 127 HOH HOH . G 5 HOH A 127 466 128 HOH HOH . G 5 HOH A 128 467 129 HOH HOH . G 5 HOH A 129 468 130 HOH HOH . G 5 HOH A 130 469 131 HOH HOH . G 5 HOH A 131 470 132 HOH HOH . G 5 HOH A 132 471 133 HOH HOH . G 5 HOH A 133 472 134 HOH HOH . G 5 HOH A 134 473 135 HOH HOH . G 5 HOH A 135 474 136 HOH HOH . G 5 HOH A 136 475 137 HOH HOH . G 5 HOH A 137 476 138 HOH HOH . G 5 HOH A 138 477 139 HOH HOH . G 5 HOH A 139 478 140 HOH HOH . G 5 HOH A 140 479 141 HOH HOH . G 5 HOH A 141 480 142 HOH HOH . G 5 HOH A 142 481 143 HOH HOH . G 5 HOH A 143 482 144 HOH HOH . G 5 HOH A 144 483 145 HOH HOH . G 5 HOH A 145 484 146 HOH HOH . G 5 HOH A 146 485 147 HOH HOH . G 5 HOH A 147 486 148 HOH HOH . G 5 HOH A 148 487 149 HOH HOH . G 5 HOH A 149 488 150 HOH HOH . G 5 HOH A 150 489 151 HOH HOH . G 5 HOH A 151 490 152 HOH HOH . G 5 HOH A 152 491 153 HOH HOH . G 5 HOH A 153 492 154 HOH HOH . G 5 HOH A 154 493 155 HOH HOH . G 5 HOH A 155 494 156 HOH HOH . G 5 HOH A 156 495 157 HOH HOH . G 5 HOH A 157 496 158 HOH HOH . G 5 HOH A 158 497 159 HOH HOH . G 5 HOH A 159 498 160 HOH HOH . G 5 HOH A 160 499 161 HOH HOH . G 5 HOH A 161 500 162 HOH HOH . G 5 HOH A 162 501 163 HOH HOH . G 5 HOH A 163 502 164 HOH HOH . G 5 HOH A 164 503 165 HOH HOH . G 5 HOH A 165 504 166 HOH HOH . G 5 HOH A 166 505 167 HOH HOH . G 5 HOH A 167 506 168 HOH HOH . G 5 HOH A 168 507 169 HOH HOH . G 5 HOH A 169 508 170 HOH HOH . G 5 HOH A 170 509 171 HOH HOH . G 5 HOH A 171 510 172 HOH HOH . G 5 HOH A 172 511 173 HOH HOH . G 5 HOH A 173 512 174 HOH HOH . G 5 HOH A 174 513 175 HOH HOH . G 5 HOH A 175 514 176 HOH HOH . G 5 HOH A 176 515 177 HOH HOH . G 5 HOH A 177 516 178 HOH HOH . G 5 HOH A 178 517 179 HOH HOH . G 5 HOH A 179 518 180 HOH HOH . G 5 HOH A 180 519 181 HOH HOH . G 5 HOH A 181 520 182 HOH HOH . G 5 HOH A 182 521 183 HOH HOH . G 5 HOH A 183 522 184 HOH HOH . G 5 HOH A 184 523 185 HOH HOH . G 5 HOH A 185 524 186 HOH HOH . G 5 HOH A 186 525 187 HOH HOH . G 5 HOH A 187 526 188 HOH HOH . G 5 HOH A 188 527 189 HOH HOH . G 5 HOH A 189 528 190 HOH HOH . G 5 HOH A 190 529 191 HOH HOH . G 5 HOH A 191 530 192 HOH HOH . G 5 HOH A 192 531 193 HOH HOH . G 5 HOH A 193 532 194 HOH HOH . G 5 HOH A 194 533 195 HOH HOH . G 5 HOH A 195 534 196 HOH HOH . G 5 HOH A 196 535 197 HOH HOH . G 5 HOH A 197 536 198 HOH HOH . G 5 HOH A 198 537 199 HOH HOH . G 5 HOH A 199 538 200 HOH HOH . G 5 HOH A 200 539 201 HOH HOH . G 5 HOH A 201 540 202 HOH HOH . G 5 HOH A 202 541 203 HOH HOH . G 5 HOH A 203 542 204 HOH HOH . G 5 HOH A 204 543 205 HOH HOH . G 5 HOH A 205 544 206 HOH HOH . G 5 HOH A 206 545 207 HOH HOH . G 5 HOH A 207 546 208 HOH HOH . G 5 HOH A 208 547 209 HOH HOH . G 5 HOH A 209 548 210 HOH HOH . G 5 HOH A 210 549 211 HOH HOH . G 5 HOH A 211 550 212 HOH HOH . G 5 HOH A 212 551 213 HOH HOH . G 5 HOH A 213 552 214 HOH HOH . G 5 HOH A 214 553 215 HOH HOH . G 5 HOH A 215 554 216 HOH HOH . G 5 HOH A 216 555 217 HOH HOH . G 5 HOH A 217 556 218 HOH HOH . G 5 HOH A 218 557 219 HOH HOH . G 5 HOH A 219 558 220 HOH HOH . G 5 HOH A 220 559 221 HOH HOH . G 5 HOH A 221 560 222 HOH HOH . G 5 HOH A 222 561 223 HOH HOH . G 5 HOH A 223 562 224 HOH HOH . G 5 HOH A 224 563 225 HOH HOH . G 5 HOH A 225 564 226 HOH HOH . G 5 HOH A 226 565 227 HOH HOH . G 5 HOH A 227 566 228 HOH HOH . G 5 HOH A 228 567 229 HOH HOH . G 5 HOH A 229 568 230 HOH HOH . G 5 HOH A 230 569 231 HOH HOH . G 5 HOH A 231 570 232 HOH HOH . G 5 HOH A 232 571 233 HOH HOH . G 5 HOH A 233 572 234 HOH HOH . G 5 HOH A 234 573 235 HOH HOH . G 5 HOH A 235 574 236 HOH HOH . G 5 HOH A 236 575 237 HOH HOH . G 5 HOH A 237 576 238 HOH HOH . G 5 HOH A 238 577 239 HOH HOH . G 5 HOH A 239 578 240 HOH HOH . G 5 HOH A 240 579 241 HOH HOH . G 5 HOH A 241 580 242 HOH HOH . G 5 HOH A 242 581 243 HOH HOH . G 5 HOH A 243 582 244 HOH HOH . G 5 HOH A 244 583 245 HOH HOH . G 5 HOH A 245 584 246 HOH HOH . G 5 HOH A 246 585 247 HOH HOH . G 5 HOH A 247 586 248 HOH HOH . G 5 HOH A 248 587 249 HOH HOH . G 5 HOH A 249 588 250 HOH HOH . G 5 HOH A 250 589 251 HOH HOH . G 5 HOH A 251 590 252 HOH HOH . G 5 HOH A 252 591 253 HOH HOH . G 5 HOH A 253 592 254 HOH HOH . G 5 HOH A 254 593 255 HOH HOH . G 5 HOH A 255 594 256 HOH HOH . G 5 HOH A 256 595 257 HOH HOH . G 5 HOH A 257 596 258 HOH HOH . G 5 HOH A 258 597 259 HOH HOH . G 5 HOH A 259 598 260 HOH HOH . G 5 HOH A 260 599 261 HOH HOH . G 5 HOH A 261 600 262 HOH HOH . G 5 HOH A 262 601 263 HOH HOH . G 5 HOH A 263 602 264 HOH HOH . G 5 HOH A 264 603 265 HOH HOH . G 5 HOH A 265 604 266 HOH HOH . G 5 HOH A 266 605 267 HOH HOH . G 5 HOH A 267 606 268 HOH HOH . G 5 HOH A 268 607 269 HOH HOH . G 5 HOH A 269 608 270 HOH HOH . G 5 HOH A 270 609 271 HOH HOH . H 5 HOH B 1 1 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -7.007 3.567 -9.467 1 35.87 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . F 4 -8.318 4.02 -9.239 1 21.23 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . F 4 -6.665 3.593 -10.953 1 36.25 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . F 4 -6.55 2.248 -11.401 1 42.39 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . F 4 -5.324 4.315 -11.093 1 38.42 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . F 4 -5.408 5.448 -11.939 1 29.19 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #