data_3D4A # _model_server_result.job_id 5OVDlgVHQE3jSjhtUdsRZA _model_server_result.datetime_utc '2024-10-15 04:35:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":99}' # _entry.id 3D4A # _exptl.entry_id 3D4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.92 _cell.angle_gamma 90 _cell.entry_id 3D4A _cell.length_a 101.521 _cell.length_b 65.913 _cell.length_c 56.966 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,F,H 2 1 C,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf2 B SG CYS 9 B CYS 9 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 C SG CYS 9 C CYS 9 1_555 C SG CYS 97 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 3GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 3GP doub 1 n n P O2P 3GP sing 2 n n P O3P 3GP sing 3 n n P O3' 3GP sing 4 n n O2P HOP2 3GP sing 5 n n O3P HOP3 3GP sing 6 n n O5' C5' 3GP sing 7 n n O5' HO5' 3GP sing 8 n n C5' C4' 3GP sing 9 n n C5' "H5'1" 3GP sing 10 n n C5' "H5'2" 3GP sing 11 n n C4' O4' 3GP sing 12 n n C4' C3' 3GP sing 13 n n C4' H4' 3GP sing 14 n n O4' C1' 3GP sing 15 n n C3' O3' 3GP sing 16 n n C3' C2' 3GP sing 17 n n C3' H3' 3GP sing 18 n n C2' O2' 3GP sing 19 n n C2' C1' 3GP sing 20 n n C2' H2' 3GP sing 21 n n O2' HO2' 3GP sing 22 n n C1' N9 3GP sing 23 n n C1' H1' 3GP sing 24 n n N9 C8 3GP sing 25 n y N9 C4 3GP sing 26 n y C8 N7 3GP doub 27 n y C8 H8 3GP sing 28 n n N7 C5 3GP sing 29 n y C5 C6 3GP sing 30 n n C5 C4 3GP doub 31 n y C6 O6 3GP doub 32 n n C6 N1 3GP sing 33 n n N1 C2 3GP sing 34 n n N1 HN1 3GP sing 35 n n C2 N2 3GP sing 36 n n C2 N3 3GP doub 37 n n N2 HN21 3GP sing 38 n n N2 HN22 3GP sing 39 n n N3 C4 3GP sing 40 n n # _atom_sites.entry_id 3D4A _atom_sites.fract_transf_matrix[1][1] 0.00985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001901 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 98 98 SO4 SO4 . E 2 SO4 B 1 98 98 SO4 SO4 . F 3 3GP B 1 99 99 3GP 3GP . G 4 HOH A 1 99 2 HOH HOH . G 4 HOH A 2 100 7 HOH HOH . G 4 HOH A 3 101 9 HOH HOH . G 4 HOH A 4 102 10 HOH HOH . G 4 HOH A 5 103 12 HOH HOH . G 4 HOH A 6 104 14 HOH HOH . G 4 HOH A 7 105 15 HOH HOH . G 4 HOH A 8 106 22 HOH HOH . G 4 HOH A 9 107 24 HOH HOH . G 4 HOH A 10 108 25 HOH HOH . G 4 HOH A 11 109 26 HOH HOH . G 4 HOH A 12 110 27 HOH HOH . G 4 HOH A 13 111 28 HOH HOH . G 4 HOH A 14 112 33 HOH HOH . G 4 HOH A 15 113 34 HOH HOH . G 4 HOH A 16 114 36 HOH HOH . G 4 HOH A 17 115 39 HOH HOH . G 4 HOH A 18 116 41 HOH HOH . G 4 HOH A 19 117 42 HOH HOH . G 4 HOH A 20 118 44 HOH HOH . G 4 HOH A 21 119 48 HOH HOH . G 4 HOH A 22 120 49 HOH HOH . G 4 HOH A 23 121 50 HOH HOH . G 4 HOH A 24 122 52 HOH HOH . G 4 HOH A 25 123 53 HOH HOH . G 4 HOH A 26 124 54 HOH HOH . G 4 HOH A 27 125 56 HOH HOH . G 4 HOH A 28 126 57 HOH HOH . G 4 HOH A 29 127 58 HOH HOH . G 4 HOH A 30 128 59 HOH HOH . G 4 HOH A 31 129 60 HOH HOH . G 4 HOH A 32 130 61 HOH HOH . G 4 HOH A 33 131 63 HOH HOH . G 4 HOH A 34 132 64 HOH HOH . G 4 HOH A 35 133 65 HOH HOH . G 4 HOH A 36 134 66 HOH HOH . G 4 HOH A 37 135 67 HOH HOH . G 4 HOH A 38 136 69 HOH HOH . G 4 HOH A 39 137 70 HOH HOH . G 4 HOH A 40 138 74 HOH HOH . G 4 HOH A 41 139 75 HOH HOH . G 4 HOH A 42 140 79 HOH HOH . G 4 HOH A 43 141 80 HOH HOH . G 4 HOH A 44 142 81 HOH HOH . G 4 HOH A 45 143 83 HOH HOH . G 4 HOH A 46 144 85 HOH HOH . G 4 HOH A 47 145 86 HOH HOH . G 4 HOH A 48 146 87 HOH HOH . G 4 HOH A 49 147 88 HOH HOH . G 4 HOH A 50 148 91 HOH HOH . G 4 HOH A 51 149 100 HOH HOH . G 4 HOH A 52 150 102 HOH HOH . G 4 HOH A 53 151 103 HOH HOH . G 4 HOH A 54 152 104 HOH HOH . G 4 HOH A 55 153 110 HOH HOH . G 4 HOH A 56 154 112 HOH HOH . G 4 HOH A 57 155 115 HOH HOH . G 4 HOH A 58 156 116 HOH HOH . G 4 HOH A 59 157 117 HOH HOH . G 4 HOH A 60 158 121 HOH HOH . G 4 HOH A 61 159 125 HOH HOH . G 4 HOH A 62 160 126 HOH HOH . G 4 HOH A 63 161 127 HOH HOH . G 4 HOH A 64 162 128 HOH HOH . G 4 HOH A 65 163 129 HOH HOH . G 4 HOH A 66 164 130 HOH HOH . G 4 HOH A 67 165 131 HOH HOH . G 4 HOH A 68 166 132 HOH HOH . G 4 HOH A 69 167 133 HOH HOH . H 4 HOH B 1 100 1 HOH HOH . H 4 HOH B 2 101 3 HOH HOH . H 4 HOH B 3 102 5 HOH HOH . H 4 HOH B 4 103 6 HOH HOH . H 4 HOH B 5 104 8 HOH HOH . H 4 HOH B 6 105 11 HOH HOH . H 4 HOH B 7 106 13 HOH HOH . H 4 HOH B 8 107 17 HOH HOH . H 4 HOH B 9 108 19 HOH HOH . H 4 HOH B 10 109 20 HOH HOH . H 4 HOH B 11 110 29 HOH HOH . H 4 HOH B 12 111 30 HOH HOH . H 4 HOH B 13 112 37 HOH HOH . H 4 HOH B 14 113 38 HOH HOH . H 4 HOH B 15 114 40 HOH HOH . H 4 HOH B 16 115 43 HOH HOH . H 4 HOH B 17 116 45 HOH HOH . H 4 HOH B 18 117 62 HOH HOH . H 4 HOH B 19 118 68 HOH HOH . H 4 HOH B 20 119 71 HOH HOH . H 4 HOH B 21 120 76 HOH HOH . H 4 HOH B 22 121 82 HOH HOH . H 4 HOH B 23 122 84 HOH HOH . H 4 HOH B 24 123 89 HOH HOH . H 4 HOH B 25 124 94 HOH HOH . H 4 HOH B 26 125 96 HOH HOH . H 4 HOH B 27 126 101 HOH HOH . H 4 HOH B 28 127 105 HOH HOH . H 4 HOH B 29 128 106 HOH HOH . H 4 HOH B 30 129 109 HOH HOH . H 4 HOH B 31 130 111 HOH HOH . H 4 HOH B 32 131 119 HOH HOH . H 4 HOH B 33 132 122 HOH HOH . H 4 HOH B 34 133 123 HOH HOH . H 4 HOH B 35 134 124 HOH HOH . I 4 HOH C 1 98 4 HOH HOH . I 4 HOH C 2 99 16 HOH HOH . I 4 HOH C 3 100 18 HOH HOH . I 4 HOH C 4 101 21 HOH HOH . I 4 HOH C 5 102 23 HOH HOH . I 4 HOH C 6 103 31 HOH HOH . I 4 HOH C 7 104 32 HOH HOH . I 4 HOH C 8 105 35 HOH HOH . I 4 HOH C 9 106 46 HOH HOH . I 4 HOH C 10 107 47 HOH HOH . I 4 HOH C 11 108 51 HOH HOH . I 4 HOH C 12 109 55 HOH HOH . I 4 HOH C 13 110 72 HOH HOH . I 4 HOH C 14 111 73 HOH HOH . I 4 HOH C 15 112 77 HOH HOH . I 4 HOH C 16 113 78 HOH HOH . I 4 HOH C 17 114 90 HOH HOH . I 4 HOH C 18 115 92 HOH HOH . I 4 HOH C 19 116 93 HOH HOH . I 4 HOH C 20 117 95 HOH HOH . I 4 HOH C 21 118 97 HOH HOH . I 4 HOH C 22 119 98 HOH HOH . I 4 HOH C 23 120 99 HOH HOH . I 4 HOH C 24 121 107 HOH HOH . I 4 HOH C 25 122 108 HOH HOH . I 4 HOH C 26 123 113 HOH HOH . I 4 HOH C 27 124 114 HOH HOH . I 4 HOH C 28 125 118 HOH HOH . I 4 HOH C 29 126 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3GP . . . F 3 58.559 -27.579 28.905 1 56.49 ? P 3GP 99 B 1 HETATM 2 O O1P 3GP . . . F 3 57.117 -27.166 29.081 1 57.72 ? O1P 3GP 99 B 1 HETATM 3 O O2P 3GP . . . F 3 58.683 -29.088 28.916 1 56.6 ? O2P 3GP 99 B 1 HETATM 4 O O3P 3GP . . . F 3 59.032 -27.116 27.541 1 57.52 ? O3P 3GP 99 B 1 HETATM 5 O O5' 3GP . . . F 3 57.226 -23.723 31.9 1 56.97 ? O5' 3GP 99 B 1 HETATM 6 C C5' 3GP . . . F 3 58.452 -23.484 31.241 1 57.21 ? C5' 3GP 99 B 1 HETATM 7 C C4' 3GP . . . F 3 58.903 -24.651 30.342 1 55.9 ? C4' 3GP 99 B 1 HETATM 8 O O4' 3GP . . . F 3 60.195 -24.362 29.857 1 55.76 ? O4' 3GP 99 B 1 HETATM 9 C C3' 3GP . . . F 3 59.124 -25.98 31.046 1 55.45 ? C3' 3GP 99 B 1 HETATM 10 O O3' 3GP . . . F 3 59.46 -26.966 30.086 1 55.16 ? O3' 3GP 99 B 1 HETATM 11 C C2' 3GP . . . F 3 60.418 -25.716 31.784 1 54.43 ? C2' 3GP 99 B 1 HETATM 12 O O2' 3GP . . . F 3 61.017 -26.932 32.187 1 55.04 ? O2' 3GP 99 B 1 HETATM 13 C C1' 3GP . . . F 3 61.177 -25.036 30.646 1 51.34 ? C1' 3GP 99 B 1 HETATM 14 N N9 3GP . . . F 3 62.252 -24.077 30.974 1 49.91 ? N9 3GP 99 B 1 HETATM 15 C C8 3GP . . . F 3 62.122 -22.722 31.152 1 49.02 ? C8 3GP 99 B 1 HETATM 16 N N7 3GP . . . F 3 63.348 -22.194 31.39 1 48.73 ? N7 3GP 99 B 1 HETATM 17 C C5 3GP . . . F 3 64.254 -23.198 31.341 1 49.02 ? C5 3GP 99 B 1 HETATM 18 C C6 3GP . . . F 3 65.633 -23.23 31.522 1 49.21 ? C6 3GP 99 B 1 HETATM 19 O O6 3GP . . . F 3 66.254 -22.196 31.753 1 49.05 ? O6 3GP 99 B 1 HETATM 20 N N1 3GP . . . F 3 66.305 -24.438 31.422 1 49.01 ? N1 3GP 99 B 1 HETATM 21 C C2 3GP . . . F 3 65.614 -25.601 31.16 1 49.11 ? C2 3GP 99 B 1 HETATM 22 N N2 3GP . . . F 3 66.288 -26.752 31.063 1 49.81 ? N2 3GP 99 B 1 HETATM 23 N N3 3GP . . . F 3 64.241 -25.565 30.998 1 47.63 ? N3 3GP 99 B 1 HETATM 24 C C4 3GP . . . F 3 63.578 -24.389 31.077 1 48.54 ? C4 3GP 99 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 517 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #