data_3D4B
#
_model_server_result.job_id            U4n94BmZubLgblFUvpOZpQ 
_model_server_result.datetime_utc      '2025-03-04 23:12:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d4b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    3D4B 
#
_exptl.entry_id    3D4B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3D4B 
_cell.length_a            45.79 
_cell.length_b            59.735 
_cell.length_c            106.114 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D4B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LYS 5 D LYS 10 1_555 B N ALY 6 D ALY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
covale ? covale2 B C ALY 6 D ALY 11 1_555 B N LEU 7 D LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
metalc ? metalc1 A SG CYS 124 A CYS 124 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc2 A SG CYS 127 A CYS 127 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc3 A SG CYS 148 A CYS 148 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc4 A SG CYS 151 A CYS 151 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3D4B 
_atom_sites.fract_transf_matrix[1][1]    0.021839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009424 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 1001 1001 ZN ZN . 
D 4 DZD A 1 1002 1 DZD DZD . 
E 5 HOH A 1 1003 1 HOH HOH . 
E 5 HOH A 2 1004 2 HOH HOH . 
E 5 HOH A 3 1005 3 HOH HOH . 
E 5 HOH A 4 1006 4 HOH HOH . 
E 5 HOH A 5 1007 5 HOH HOH . 
E 5 HOH A 6 1008 6 HOH HOH . 
E 5 HOH A 7 1009 7 HOH HOH . 
E 5 HOH A 8 1010 8 HOH HOH . 
E 5 HOH A 9 1011 9 HOH HOH . 
E 5 HOH A 10 1012 10 HOH HOH . 
E 5 HOH A 11 1013 11 HOH HOH . 
E 5 HOH A 12 1014 12 HOH HOH . 
E 5 HOH A 13 1015 13 HOH HOH . 
E 5 HOH A 14 1016 14 HOH HOH . 
E 5 HOH A 15 1017 15 HOH HOH . 
E 5 HOH A 16 1018 16 HOH HOH . 
E 5 HOH A 17 1019 17 HOH HOH . 
E 5 HOH A 18 1020 18 HOH HOH . 
E 5 HOH A 19 1021 19 HOH HOH . 
E 5 HOH A 20 1022 20 HOH HOH . 
E 5 HOH A 21 1023 22 HOH HOH . 
E 5 HOH A 22 1024 23 HOH HOH . 
E 5 HOH A 23 1025 24 HOH HOH . 
E 5 HOH A 24 1026 25 HOH HOH . 
E 5 HOH A 25 1027 26 HOH HOH . 
E 5 HOH A 26 1028 27 HOH HOH . 
E 5 HOH A 27 1029 28 HOH HOH . 
E 5 HOH A 28 1030 29 HOH HOH . 
E 5 HOH A 29 1031 30 HOH HOH . 
E 5 HOH A 30 1032 31 HOH HOH . 
E 5 HOH A 31 1033 32 HOH HOH . 
E 5 HOH A 32 1034 33 HOH HOH . 
E 5 HOH A 33 1035 34 HOH HOH . 
E 5 HOH A 34 1036 35 HOH HOH . 
E 5 HOH A 35 1037 36 HOH HOH . 
E 5 HOH A 36 1038 37 HOH HOH . 
E 5 HOH A 37 1039 38 HOH HOH . 
E 5 HOH A 38 1040 39 HOH HOH . 
E 5 HOH A 39 1041 41 HOH HOH . 
E 5 HOH A 40 1042 42 HOH HOH . 
E 5 HOH A 41 1043 43 HOH HOH . 
E 5 HOH A 42 1044 44 HOH HOH . 
E 5 HOH A 43 1045 45 HOH HOH . 
E 5 HOH A 44 1046 46 HOH HOH . 
E 5 HOH A 45 1047 47 HOH HOH . 
E 5 HOH A 46 1048 48 HOH HOH . 
E 5 HOH A 47 1049 49 HOH HOH . 
E 5 HOH A 48 1050 50 HOH HOH . 
E 5 HOH A 49 1051 51 HOH HOH . 
E 5 HOH A 50 1052 52 HOH HOH . 
E 5 HOH A 51 1053 53 HOH HOH . 
E 5 HOH A 52 1054 54 HOH HOH . 
E 5 HOH A 53 1055 55 HOH HOH . 
E 5 HOH A 54 1056 56 HOH HOH . 
E 5 HOH A 55 1057 57 HOH HOH . 
E 5 HOH A 56 1058 58 HOH HOH . 
E 5 HOH A 57 1059 59 HOH HOH . 
E 5 HOH A 58 1060 60 HOH HOH . 
E 5 HOH A 59 1061 61 HOH HOH . 
E 5 HOH A 60 1062 62 HOH HOH . 
E 5 HOH A 61 1063 63 HOH HOH . 
E 5 HOH A 62 1064 64 HOH HOH . 
E 5 HOH A 63 1065 65 HOH HOH . 
E 5 HOH A 64 1066 66 HOH HOH . 
E 5 HOH A 65 1067 67 HOH HOH . 
E 5 HOH A 66 1068 68 HOH HOH . 
E 5 HOH A 67 1069 69 HOH HOH . 
E 5 HOH A 68 1070 70 HOH HOH . 
E 5 HOH A 69 1071 71 HOH HOH . 
E 5 HOH A 70 1072 72 HOH HOH . 
E 5 HOH A 71 1073 73 HOH HOH . 
E 5 HOH A 72 1074 74 HOH HOH . 
E 5 HOH A 73 1075 75 HOH HOH . 
E 5 HOH A 74 1076 76 HOH HOH . 
E 5 HOH A 75 1077 77 HOH HOH . 
E 5 HOH A 76 1078 78 HOH HOH . 
E 5 HOH A 77 1079 79 HOH HOH . 
E 5 HOH A 78 1080 80 HOH HOH . 
E 5 HOH A 79 1081 81 HOH HOH . 
E 5 HOH A 80 1082 82 HOH HOH . 
E 5 HOH A 81 1083 83 HOH HOH . 
E 5 HOH A 82 1084 84 HOH HOH . 
E 5 HOH A 83 1085 85 HOH HOH . 
E 5 HOH A 84 1086 86 HOH HOH . 
E 5 HOH A 85 1087 87 HOH HOH . 
E 5 HOH A 86 1088 88 HOH HOH . 
E 5 HOH A 87 1089 89 HOH HOH . 
E 5 HOH A 88 1090 90 HOH HOH . 
E 5 HOH A 89 1091 91 HOH HOH . 
E 5 HOH A 90 1092 92 HOH HOH . 
E 5 HOH A 91 1093 93 HOH HOH . 
E 5 HOH A 92 1094 94 HOH HOH . 
E 5 HOH A 93 1095 95 HOH HOH . 
E 5 HOH A 94 1096 96 HOH HOH . 
E 5 HOH A 95 1097 97 HOH HOH . 
E 5 HOH A 96 1098 98 HOH HOH . 
E 5 HOH A 97 1099 99 HOH HOH . 
E 5 HOH A 98 1100 101 HOH HOH . 
E 5 HOH A 99 1101 102 HOH HOH . 
E 5 HOH A 100 1102 104 HOH HOH . 
E 5 HOH A 101 1103 105 HOH HOH . 
E 5 HOH A 102 1104 106 HOH HOH . 
E 5 HOH A 103 1105 107 HOH HOH . 
E 5 HOH A 104 1106 108 HOH HOH . 
E 5 HOH A 105 1107 109 HOH HOH . 
E 5 HOH A 106 1108 112 HOH HOH . 
E 5 HOH A 107 1109 113 HOH HOH . 
E 5 HOH A 108 1110 114 HOH HOH . 
E 5 HOH A 109 1111 117 HOH HOH . 
E 5 HOH A 110 1112 118 HOH HOH . 
E 5 HOH A 111 1113 119 HOH HOH . 
E 5 HOH A 112 1114 120 HOH HOH . 
E 5 HOH A 113 1115 121 HOH HOH . 
E 5 HOH A 114 1116 123 HOH HOH . 
E 5 HOH A 115 1117 125 HOH HOH . 
E 5 HOH A 116 1118 126 HOH HOH . 
E 5 HOH A 117 1119 128 HOH HOH . 
E 5 HOH A 118 1120 129 HOH HOH . 
E 5 HOH A 119 1121 130 HOH HOH . 
E 5 HOH A 120 1122 131 HOH HOH . 
E 5 HOH A 121 1123 132 HOH HOH . 
E 5 HOH A 122 1124 133 HOH HOH . 
E 5 HOH A 123 1125 134 HOH HOH . 
E 5 HOH A 124 1126 135 HOH HOH . 
E 5 HOH A 125 1127 136 HOH HOH . 
E 5 HOH A 126 1128 137 HOH HOH . 
E 5 HOH A 127 1129 138 HOH HOH . 
E 5 HOH A 128 1130 139 HOH HOH . 
E 5 HOH A 129 1131 140 HOH HOH . 
E 5 HOH A 130 1132 141 HOH HOH . 
E 5 HOH A 131 1133 142 HOH HOH . 
E 5 HOH A 132 1134 143 HOH HOH . 
E 5 HOH A 133 1135 144 HOH HOH . 
E 5 HOH A 134 1136 145 HOH HOH . 
E 5 HOH A 135 1137 146 HOH HOH . 
E 5 HOH A 136 1138 147 HOH HOH . 
E 5 HOH A 137 1139 148 HOH HOH . 
E 5 HOH A 138 1140 149 HOH HOH . 
F 5 HOH D 1 40 40 HOH HOH . 
F 5 HOH D 2 116 116 HOH HOH . 
F 5 HOH D 3 122 122 HOH HOH . 
F 5 HOH D 4 124 124 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -15.73 
_atom_site.Cartn_y               40.115 
_atom_site.Cartn_z               20.65 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        43.75 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#