data_3D4E
#
_model_server_result.job_id            bjRKBX8zqTdYZo_V6KNR-Q 
_model_server_result.datetime_utc      '2024-10-20 03:39:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d4e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3}' 
#
_entry.id    3D4E 
#
_exptl.entry_id    3D4E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.01 
_cell.angle_gamma         90 
_cell.entry_id            3D4E 
_cell.length_a            180.695 
_cell.length_b            28.373 
_cell.length_c            32.64 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D4E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 136 A SER 163 1_555 A N MSE 137 A MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale2 A C MSE 137 A MSE 164 1_555 A N SER 138 A SER 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale3 A C GLU 143 A GLU 170 1_555 A N MSE 144 A MSE 171 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale4 A C GLU 143 A GLU 170 1_555 A N MSE 144 A MSE 171 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale5 A C MSE 144 A MSE 171 1_555 A N GLN 145 A GLN 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 76 n n 
C1 C2 EDO sing 77 n n 
C1 H11 EDO sing 78 n n 
C1 H12 EDO sing 79 n n 
O1 HO1 EDO sing 80 n n 
C2 O2 EDO sing 81 n n 
C2 H21 EDO sing 82 n n 
C2 H22 EDO sing 83 n n 
O2 HO2 EDO sing 84 n n 
#
_atom_sites.entry_id                     3D4E 
_atom_sites.fract_transf_matrix[1][1]    0.005534 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.035245 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030637 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 1 1 ACT ACT . 
C 3 EDO A 1 2 2 EDO EDO . 
D 3 EDO A 1 3 3 EDO EDO . 
E 3 EDO A 1 4 4 EDO EDO . 
F 4 HOH A 1 207 5 HOH HOH . 
F 4 HOH A 2 208 6 HOH HOH . 
F 4 HOH A 3 209 7 HOH HOH . 
F 4 HOH A 4 210 8 HOH HOH . 
F 4 HOH A 5 211 9 HOH HOH . 
F 4 HOH A 6 212 10 HOH HOH . 
F 4 HOH A 7 213 11 HOH HOH . 
F 4 HOH A 8 214 12 HOH HOH . 
F 4 HOH A 9 215 13 HOH HOH . 
F 4 HOH A 10 216 14 HOH HOH . 
F 4 HOH A 11 217 15 HOH HOH . 
F 4 HOH A 12 218 16 HOH HOH . 
F 4 HOH A 13 219 17 HOH HOH . 
F 4 HOH A 14 220 18 HOH HOH . 
F 4 HOH A 15 221 19 HOH HOH . 
F 4 HOH A 16 222 20 HOH HOH . 
F 4 HOH A 17 223 21 HOH HOH . 
F 4 HOH A 18 224 22 HOH HOH . 
F 4 HOH A 19 225 23 HOH HOH . 
F 4 HOH A 20 226 24 HOH HOH . 
F 4 HOH A 21 227 25 HOH HOH . 
F 4 HOH A 22 228 26 HOH HOH . 
F 4 HOH A 23 229 27 HOH HOH . 
F 4 HOH A 24 230 28 HOH HOH . 
F 4 HOH A 25 231 29 HOH HOH . 
F 4 HOH A 26 232 30 HOH HOH . 
F 4 HOH A 27 233 31 HOH HOH . 
F 4 HOH A 28 234 32 HOH HOH . 
F 4 HOH A 29 235 33 HOH HOH . 
F 4 HOH A 30 236 34 HOH HOH . 
F 4 HOH A 31 237 35 HOH HOH . 
F 4 HOH A 32 238 36 HOH HOH . 
F 4 HOH A 33 239 37 HOH HOH . 
F 4 HOH A 34 240 38 HOH HOH . 
F 4 HOH A 35 241 39 HOH HOH . 
F 4 HOH A 36 242 40 HOH HOH . 
F 4 HOH A 37 243 41 HOH HOH . 
F 4 HOH A 38 244 42 HOH HOH . 
F 4 HOH A 39 245 43 HOH HOH . 
F 4 HOH A 40 246 44 HOH HOH . 
F 4 HOH A 41 247 45 HOH HOH . 
F 4 HOH A 42 248 46 HOH HOH . 
F 4 HOH A 43 249 47 HOH HOH . 
F 4 HOH A 44 250 48 HOH HOH . 
F 4 HOH A 45 251 49 HOH HOH . 
F 4 HOH A 46 252 50 HOH HOH . 
F 4 HOH A 47 253 51 HOH HOH . 
F 4 HOH A 48 254 52 HOH HOH . 
F 4 HOH A 49 255 53 HOH HOH . 
F 4 HOH A 50 256 54 HOH HOH . 
F 4 HOH A 51 257 55 HOH HOH . 
F 4 HOH A 52 258 56 HOH HOH . 
F 4 HOH A 53 259 57 HOH HOH . 
F 4 HOH A 54 260 58 HOH HOH . 
F 4 HOH A 55 261 59 HOH HOH . 
F 4 HOH A 56 262 60 HOH HOH . 
F 4 HOH A 57 263 61 HOH HOH . 
F 4 HOH A 58 264 62 HOH HOH . 
F 4 HOH A 59 265 63 HOH HOH . 
F 4 HOH A 60 266 64 HOH HOH . 
F 4 HOH A 61 267 65 HOH HOH . 
F 4 HOH A 62 268 66 HOH HOH . 
F 4 HOH A 63 269 67 HOH HOH . 
F 4 HOH A 64 270 68 HOH HOH . 
F 4 HOH A 65 271 69 HOH HOH . 
F 4 HOH A 66 272 70 HOH HOH . 
F 4 HOH A 67 273 71 HOH HOH . 
F 4 HOH A 68 274 72 HOH HOH . 
F 4 HOH A 69 275 73 HOH HOH . 
F 4 HOH A 70 276 74 HOH HOH . 
F 4 HOH A 71 277 75 HOH HOH . 
F 4 HOH A 72 278 76 HOH HOH . 
F 4 HOH A 73 279 77 HOH HOH . 
F 4 HOH A 74 280 78 HOH HOH . 
F 4 HOH A 75 281 79 HOH HOH . 
F 4 HOH A 76 282 80 HOH HOH . 
F 4 HOH A 77 283 81 HOH HOH . 
F 4 HOH A 78 284 82 HOH HOH . 
F 4 HOH A 79 285 83 HOH HOH . 
F 4 HOH A 80 286 84 HOH HOH . 
F 4 HOH A 81 287 85 HOH HOH . 
F 4 HOH A 82 288 86 HOH HOH . 
F 4 HOH A 83 289 87 HOH HOH . 
F 4 HOH A 84 290 88 HOH HOH . 
F 4 HOH A 85 291 89 HOH HOH . 
F 4 HOH A 86 292 90 HOH HOH . 
F 4 HOH A 87 293 91 HOH HOH . 
F 4 HOH A 88 294 92 HOH HOH . 
F 4 HOH A 89 295 93 HOH HOH . 
F 4 HOH A 90 296 94 HOH HOH . 
F 4 HOH A 91 297 95 HOH HOH . 
F 4 HOH A 92 298 96 HOH HOH . 
F 4 HOH A 93 299 97 HOH HOH . 
F 4 HOH A 94 300 98 HOH HOH . 
F 4 HOH A 95 301 99 HOH HOH . 
F 4 HOH A 96 302 100 HOH HOH . 
F 4 HOH A 97 303 101 HOH HOH . 
F 4 HOH A 98 304 102 HOH HOH . 
F 4 HOH A 99 305 103 HOH HOH . 
F 4 HOH A 100 306 104 HOH HOH . 
F 4 HOH A 101 307 105 HOH HOH . 
F 4 HOH A 102 308 106 HOH HOH . 
F 4 HOH A 103 309 107 HOH HOH . 
F 4 HOH A 104 310 108 HOH HOH . 
F 4 HOH A 105 311 109 HOH HOH . 
F 4 HOH A 106 312 110 HOH HOH . 
F 4 HOH A 107 313 111 HOH HOH . 
F 4 HOH A 108 314 112 HOH HOH . 
F 4 HOH A 109 315 113 HOH HOH . 
F 4 HOH A 110 316 114 HOH HOH . 
F 4 HOH A 111 317 115 HOH HOH . 
F 4 HOH A 112 318 116 HOH HOH . 
F 4 HOH A 113 319 117 HOH HOH . 
F 4 HOH A 114 320 118 HOH HOH . 
F 4 HOH A 115 321 119 HOH HOH . 
F 4 HOH A 116 322 120 HOH HOH . 
F 4 HOH A 117 323 121 HOH HOH . 
F 4 HOH A 118 324 122 HOH HOH . 
F 4 HOH A 119 325 123 HOH HOH . 
F 4 HOH A 120 326 124 HOH HOH . 
F 4 HOH A 121 327 125 HOH HOH . 
F 4 HOH A 122 328 126 HOH HOH . 
F 4 HOH A 123 329 127 HOH HOH . 
F 4 HOH A 124 330 128 HOH HOH . 
F 4 HOH A 125 331 129 HOH HOH . 
F 4 HOH A 126 332 130 HOH HOH . 
F 4 HOH A 127 333 131 HOH HOH . 
F 4 HOH A 128 334 132 HOH HOH . 
F 4 HOH A 129 335 133 HOH HOH . 
F 4 HOH A 130 336 134 HOH HOH . 
F 4 HOH A 131 337 135 HOH HOH . 
F 4 HOH A 132 338 136 HOH HOH . 
F 4 HOH A 133 339 137 HOH HOH . 
F 4 HOH A 134 340 138 HOH HOH . 
F 4 HOH A 135 341 139 HOH HOH . 
F 4 HOH A 136 342 140 HOH HOH . 
F 4 HOH A 137 343 141 HOH HOH . 
F 4 HOH A 138 344 142 HOH HOH . 
F 4 HOH A 139 345 143 HOH HOH . 
F 4 HOH A 140 346 144 HOH HOH . 
F 4 HOH A 141 347 145 HOH HOH . 
F 4 HOH A 142 348 146 HOH HOH . 
F 4 HOH A 143 349 147 HOH HOH . 
F 4 HOH A 144 350 148 HOH HOH . 
F 4 HOH A 145 351 149 HOH HOH . 
F 4 HOH A 146 352 150 HOH HOH . 
F 4 HOH A 147 353 151 HOH HOH . 
F 4 HOH A 148 354 152 HOH HOH . 
F 4 HOH A 149 355 153 HOH HOH . 
F 4 HOH A 150 356 154 HOH HOH . 
F 4 HOH A 151 357 155 HOH HOH . 
F 4 HOH A 152 358 156 HOH HOH . 
F 4 HOH A 153 359 157 HOH HOH . 
F 4 HOH A 154 360 158 HOH HOH . 
F 4 HOH A 155 361 159 HOH HOH . 
F 4 HOH A 156 362 160 HOH HOH . 
F 4 HOH A 157 363 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 69.492 26.145 16.082 1 26.14 ? C1 EDO 3 A 1 
HETATM 2 O O1 EDO . . . D 3 70.888 26.446 15.901 1 38.18 ? O1 EDO 3 A 1 
HETATM 3 C C2 EDO . . . D 3 68.811 27.268 16.785 1 22.85 ? C2 EDO 3 A 1 
HETATM 4 O O2 EDO . . . D 3 68.044 26.934 17.906 1 31.2 ? O2 EDO 3 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#