data_3D4N
#
_model_server_result.job_id            Fhgy2fi0LLibjogSrdOUtQ 
_model_server_result.datetime_utc      '2025-03-29 01:49:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d4n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":293}' 
#
_entry.id    3D4N 
#
_exptl.entry_id    3D4N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              449.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-{[(3R)-3-methyl-4-({4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]phenyl}sulfonyl)piperazin-1-yl]methyl}cyclopropanecarboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.11 
_cell.angle_gamma         90 
_cell.entry_id            3D4N 
_cell.length_a            56.619 
_cell.length_b            153.759 
_cell.length_c            73.908 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D4N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C19 H26 F3 N3 O4 S' 
_chem_comp.formula_weight    449.488 
_chem_comp.id                D4N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-{[(3R)-3-methyl-4-({4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]phenyl}sulfonyl)piperazin-1-yl]methyl}cyclopropanecarboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C3 D4N doub 83 n n 
C1 C3 D4N sing 84 n n 
C1 C6 D4N sing 85 n n 
C1 C14 D4N sing 86 n n 
C1 C23 D4N sing 87 n n 
C2 C5 D4N sing 88 n n 
C2 F4 D4N sing 89 n n 
C2 F1 D4N sing 90 n n 
C2 F3 D4N sing 91 n n 
C3 N1 D4N sing 92 n n 
C5 C7 D4N sing 93 n n 
C5 C8 D4N sing 94 n n 
C5 O6 D4N sing 95 n n 
C6 C14 D4N sing 96 n n 
C8 C9 D4N doub 97 n y 
C8 C13 D4N sing 98 n y 
C9 C10 D4N sing 99 n y 
C10 C11 D4N doub 100 n y 
C11 C12 D4N sing 101 n y 
C11 S14 D4N sing 102 n n 
C12 C13 D4N doub 103 n y 
C18 N17 D4N sing 104 n n 
C18 C19 D4N sing 105 n n 
S14 O15 D4N doub 106 n n 
S14 O16 D4N doub 107 n n 
S14 N17 D4N sing 108 n n 
N17 C22 D4N sing 109 n n 
C22 C68 D4N sing 110 n n 
C22 C21 D4N sing 111 n n 
C21 N20 D4N sing 112 n n 
C19 N20 D4N sing 113 n n 
N20 C23 D4N sing 114 n n 
C6 H6 D4N sing 115 n n 
C6 H6A D4N sing 116 n n 
C7 H7 D4N sing 117 n n 
C7 H7A D4N sing 118 n n 
C7 H7B D4N sing 119 n n 
C9 H9 D4N sing 120 n n 
C10 H10 D4N sing 121 n n 
C12 H12 D4N sing 122 n n 
C13 H13 D4N sing 123 n n 
C14 H14 D4N sing 124 n n 
C14 H14A D4N sing 125 n n 
C18 H18 D4N sing 126 n n 
C18 H18A D4N sing 127 n n 
O6 HO6 D4N sing 128 n n 
C22 H22 D4N sing 129 n n 
C68 H68 D4N sing 130 n n 
C68 H68A D4N sing 131 n n 
C68 H68B D4N sing 132 n n 
C21 H21 D4N sing 133 n n 
C21 H21A D4N sing 134 n n 
C19 H19 D4N sing 135 n n 
C19 H19A D4N sing 136 n n 
C23 H23 D4N sing 137 n n 
C23 H23A D4N sing 138 n n 
N1 HN1 D4N sing 139 n n 
N1 HN1A D4N sing 140 n n 
#
_atom_sites.entry_id                     3D4N 
_atom_sites.fract_transf_matrix[1][1]    0.017662 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00096 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006504 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01355 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 1 1 NAP NAP . 
F 3 D4N A 1 293 293 D4N D4N . 
G 2 NAP B 1 2 2 NAP NAP . 
H 3 D4N B 1 293 293 D4N D4N . 
I 2 NAP C 1 3 3 NAP NAP . 
J 3 D4N C 1 293 293 D4N D4N . 
K 2 NAP D 1 4 4 NAP NAP . 
L 3 D4N D 1 293 293 D4N D4N . 
M 4 HOH A 1 294 294 HOH HOH . 
M 4 HOH A 2 295 295 HOH HOH . 
M 4 HOH A 3 296 296 HOH HOH . 
M 4 HOH A 4 297 297 HOH HOH . 
M 4 HOH A 5 298 298 HOH HOH . 
M 4 HOH A 6 299 299 HOH HOH . 
M 4 HOH A 7 300 300 HOH HOH . 
M 4 HOH A 8 301 301 HOH HOH . 
M 4 HOH A 9 302 302 HOH HOH . 
M 4 HOH A 10 303 303 HOH HOH . 
M 4 HOH A 11 304 304 HOH HOH . 
M 4 HOH A 12 305 305 HOH HOH . 
M 4 HOH A 13 306 306 HOH HOH . 
M 4 HOH A 14 307 307 HOH HOH . 
M 4 HOH A 15 308 308 HOH HOH . 
M 4 HOH A 16 309 309 HOH HOH . 
M 4 HOH A 17 310 310 HOH HOH . 
M 4 HOH A 18 311 311 HOH HOH . 
M 4 HOH A 19 312 312 HOH HOH . 
M 4 HOH A 20 313 313 HOH HOH . 
M 4 HOH A 21 314 314 HOH HOH . 
M 4 HOH A 22 315 315 HOH HOH . 
M 4 HOH A 23 316 316 HOH HOH . 
M 4 HOH A 24 317 317 HOH HOH . 
M 4 HOH A 25 318 318 HOH HOH . 
M 4 HOH A 26 319 319 HOH HOH . 
M 4 HOH A 27 320 320 HOH HOH . 
M 4 HOH A 28 321 321 HOH HOH . 
M 4 HOH A 29 322 322 HOH HOH . 
M 4 HOH A 30 323 323 HOH HOH . 
M 4 HOH A 31 324 324 HOH HOH . 
M 4 HOH A 32 325 325 HOH HOH . 
M 4 HOH A 33 326 326 HOH HOH . 
M 4 HOH A 34 327 327 HOH HOH . 
M 4 HOH A 35 328 328 HOH HOH . 
M 4 HOH A 36 329 329 HOH HOH . 
M 4 HOH A 37 330 330 HOH HOH . 
M 4 HOH A 38 331 331 HOH HOH . 
M 4 HOH A 39 332 332 HOH HOH . 
M 4 HOH A 40 333 333 HOH HOH . 
M 4 HOH A 41 334 334 HOH HOH . 
M 4 HOH A 42 335 335 HOH HOH . 
M 4 HOH A 43 336 336 HOH HOH . 
M 4 HOH A 44 337 337 HOH HOH . 
M 4 HOH A 45 338 338 HOH HOH . 
M 4 HOH A 46 339 339 HOH HOH . 
M 4 HOH A 47 340 340 HOH HOH . 
M 4 HOH A 48 341 341 HOH HOH . 
M 4 HOH A 49 342 342 HOH HOH . 
M 4 HOH A 50 343 343 HOH HOH . 
M 4 HOH A 51 344 344 HOH HOH . 
M 4 HOH A 52 345 345 HOH HOH . 
N 4 HOH B 1 294 294 HOH HOH . 
N 4 HOH B 2 295 295 HOH HOH . 
N 4 HOH B 3 296 296 HOH HOH . 
N 4 HOH B 4 297 297 HOH HOH . 
N 4 HOH B 5 298 298 HOH HOH . 
N 4 HOH B 6 299 299 HOH HOH . 
N 4 HOH B 7 300 300 HOH HOH . 
N 4 HOH B 8 301 301 HOH HOH . 
N 4 HOH B 9 302 302 HOH HOH . 
N 4 HOH B 10 303 303 HOH HOH . 
N 4 HOH B 11 304 304 HOH HOH . 
N 4 HOH B 12 305 305 HOH HOH . 
N 4 HOH B 13 306 306 HOH HOH . 
N 4 HOH B 14 307 307 HOH HOH . 
N 4 HOH B 15 308 308 HOH HOH . 
N 4 HOH B 16 309 309 HOH HOH . 
N 4 HOH B 17 310 310 HOH HOH . 
N 4 HOH B 18 311 311 HOH HOH . 
N 4 HOH B 19 312 312 HOH HOH . 
N 4 HOH B 20 313 313 HOH HOH . 
N 4 HOH B 21 314 314 HOH HOH . 
N 4 HOH B 22 315 315 HOH HOH . 
N 4 HOH B 23 316 316 HOH HOH . 
N 4 HOH B 24 317 317 HOH HOH . 
N 4 HOH B 25 318 318 HOH HOH . 
N 4 HOH B 26 319 319 HOH HOH . 
N 4 HOH B 27 320 320 HOH HOH . 
N 4 HOH B 28 321 321 HOH HOH . 
N 4 HOH B 29 322 322 HOH HOH . 
N 4 HOH B 30 323 323 HOH HOH . 
N 4 HOH B 31 324 324 HOH HOH . 
N 4 HOH B 32 325 325 HOH HOH . 
N 4 HOH B 33 326 326 HOH HOH . 
N 4 HOH B 34 327 327 HOH HOH . 
N 4 HOH B 35 328 328 HOH HOH . 
N 4 HOH B 36 329 329 HOH HOH . 
N 4 HOH B 37 330 330 HOH HOH . 
N 4 HOH B 38 331 331 HOH HOH . 
N 4 HOH B 39 332 332 HOH HOH . 
N 4 HOH B 40 333 333 HOH HOH . 
N 4 HOH B 41 334 334 HOH HOH . 
N 4 HOH B 42 335 335 HOH HOH . 
N 4 HOH B 43 336 336 HOH HOH . 
N 4 HOH B 44 337 337 HOH HOH . 
N 4 HOH B 45 338 338 HOH HOH . 
N 4 HOH B 46 339 339 HOH HOH . 
N 4 HOH B 47 340 340 HOH HOH . 
N 4 HOH B 48 341 341 HOH HOH . 
O 4 HOH C 1 294 294 HOH HOH . 
O 4 HOH C 2 295 295 HOH HOH . 
O 4 HOH C 3 296 296 HOH HOH . 
O 4 HOH C 4 297 297 HOH HOH . 
O 4 HOH C 5 298 298 HOH HOH . 
O 4 HOH C 6 299 299 HOH HOH . 
O 4 HOH C 7 300 300 HOH HOH . 
O 4 HOH C 8 301 301 HOH HOH . 
O 4 HOH C 9 302 302 HOH HOH . 
O 4 HOH C 10 303 303 HOH HOH . 
O 4 HOH C 11 304 304 HOH HOH . 
O 4 HOH C 12 305 305 HOH HOH . 
O 4 HOH C 13 306 306 HOH HOH . 
O 4 HOH C 14 307 307 HOH HOH . 
O 4 HOH C 15 308 308 HOH HOH . 
O 4 HOH C 16 309 309 HOH HOH . 
O 4 HOH C 17 310 310 HOH HOH . 
O 4 HOH C 18 311 311 HOH HOH . 
O 4 HOH C 19 312 312 HOH HOH . 
O 4 HOH C 20 313 313 HOH HOH . 
O 4 HOH C 21 314 314 HOH HOH . 
O 4 HOH C 22 315 315 HOH HOH . 
O 4 HOH C 23 316 316 HOH HOH . 
O 4 HOH C 24 317 317 HOH HOH . 
O 4 HOH C 25 318 318 HOH HOH . 
O 4 HOH C 26 319 319 HOH HOH . 
O 4 HOH C 27 320 320 HOH HOH . 
O 4 HOH C 28 321 321 HOH HOH . 
O 4 HOH C 29 322 322 HOH HOH . 
O 4 HOH C 30 323 323 HOH HOH . 
O 4 HOH C 31 324 324 HOH HOH . 
O 4 HOH C 32 325 325 HOH HOH . 
O 4 HOH C 33 326 326 HOH HOH . 
O 4 HOH C 34 327 327 HOH HOH . 
O 4 HOH C 35 328 328 HOH HOH . 
O 4 HOH C 36 329 329 HOH HOH . 
O 4 HOH C 37 330 330 HOH HOH . 
O 4 HOH C 38 331 331 HOH HOH . 
O 4 HOH C 39 332 332 HOH HOH . 
O 4 HOH C 40 333 333 HOH HOH . 
O 4 HOH C 41 334 334 HOH HOH . 
O 4 HOH C 42 335 335 HOH HOH . 
O 4 HOH C 43 336 336 HOH HOH . 
O 4 HOH C 44 337 337 HOH HOH . 
O 4 HOH C 45 338 338 HOH HOH . 
O 4 HOH C 46 339 339 HOH HOH . 
O 4 HOH C 47 340 340 HOH HOH . 
P 4 HOH D 1 294 294 HOH HOH . 
P 4 HOH D 2 295 295 HOH HOH . 
P 4 HOH D 3 296 296 HOH HOH . 
P 4 HOH D 4 297 297 HOH HOH . 
P 4 HOH D 5 298 298 HOH HOH . 
P 4 HOH D 6 299 299 HOH HOH . 
P 4 HOH D 7 300 300 HOH HOH . 
P 4 HOH D 8 301 301 HOH HOH . 
P 4 HOH D 9 302 302 HOH HOH . 
P 4 HOH D 10 303 303 HOH HOH . 
P 4 HOH D 11 304 304 HOH HOH . 
P 4 HOH D 12 305 305 HOH HOH . 
P 4 HOH D 13 306 306 HOH HOH . 
P 4 HOH D 14 307 307 HOH HOH . 
P 4 HOH D 15 308 308 HOH HOH . 
P 4 HOH D 16 309 309 HOH HOH . 
P 4 HOH D 17 310 310 HOH HOH . 
P 4 HOH D 18 311 311 HOH HOH . 
P 4 HOH D 19 312 312 HOH HOH . 
P 4 HOH D 20 313 313 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 D4N . . . H 3 -24.687 8.96 19.474 1 30.48 ? O1 D4N 293 B 1 
HETATM 2 C C1 D4N . . . H 3 -25.563 7.01 18.423 1 29.94 ? C1 D4N 293 B 1 
HETATM 3 C C2 D4N . . . H 3 -26.716 0.203 15.804 1 30.35 ? C2 D4N 293 B 1 
HETATM 4 C C3 D4N . . . H 3 -25.096 8.453 18.44 1 30.32 ? C3 D4N 293 B 1 
HETATM 5 C C5 D4N . . . H 3 -26.266 0.118 14.353 1 29.95 ? C5 D4N 293 B 1 
HETATM 6 C C6 D4N . . . H 3 -24.78 6.071 19.332 1 30.09 ? C6 D4N 293 B 1 
HETATM 7 C C7 D4N . . . H 3 -25.403 -1.122 14.154 1 30.31 ? C7 D4N 293 B 1 
HETATM 8 C C8 D4N . . . H 3 -25.548 1.367 13.92 1 29.63 ? C8 D4N 293 B 1 
HETATM 9 C C9 D4N . . . H 3 -26.24 2.336 13.199 1 29.62 ? C9 D4N 293 B 1 
HETATM 10 C C10 D4N . . . H 3 -25.602 3.501 12.777 1 29.27 ? C10 D4N 293 B 1 
HETATM 11 C C11 D4N . . . H 3 -24.259 3.707 13.075 1 29.28 ? C11 D4N 293 B 1 
HETATM 12 C C12 D4N . . . H 3 -23.568 2.733 13.791 1 29.38 ? C12 D4N 293 B 1 
HETATM 13 C C13 D4N . . . H 3 -24.206 1.571 14.212 1 29.33 ? C13 D4N 293 B 1 
HETATM 14 C C14 D4N . . . H 3 -26.18 6.537 19.733 1 30.15 ? C14 D4N 293 B 1 
HETATM 15 C C18 D4N . . . H 3 -23.157 6.036 14.957 1 28.59 ? C18 D4N 293 B 1 
HETATM 16 F F4 D4N . . . H 3 -27.553 1.213 15.937 1 31.05 ? F4 D4N 293 B 1 
HETATM 17 F F1 D4N . . . H 3 -25.685 0.379 16.61 1 31.25 ? F1 D4N 293 B 1 
HETATM 18 F F3 D4N . . . H 3 -27.322 -0.927 16.115 1 30.05 ? F3 D4N 293 B 1 
HETATM 19 O O6 D4N . . . H 3 -27.434 -0.014 13.543 1 29.8 ? O6 D4N 293 B 1 
HETATM 20 S S14 D4N . . . H 3 -23.509 5.043 12.597 1 28.93 ? S14 D4N 293 B 1 
HETATM 21 O O15 D4N . . . H 3 -23.988 5.411 11.296 1 28.32 ? O15 D4N 293 B 1 
HETATM 22 O O16 D4N . . . H 3 -22.1 4.774 12.494 1 28.6 ? O16 D4N 293 B 1 
HETATM 23 N N17 D4N . . . H 3 -23.737 6.291 13.614 1 28.59 ? N17 D4N 293 B 1 
HETATM 24 C C22 D4N . . . H 3 -25.141 6.784 13.596 1 28.53 ? C22 D4N 293 B 1 
HETATM 25 C C68 D4N . . . H 3 -25.13 8.309 13.536 1 27.98 ? C68 D4N 293 B 1 
HETATM 26 C C21 D4N . . . H 3 -25.991 6.326 14.773 1 29.04 ? C21 D4N 293 B 1 
HETATM 27 C C19 D4N . . . H 3 -24.161 5.61 16.021 1 28.81 ? C19 D4N 293 B 1 
HETATM 28 N N20 D4N . . . H 3 -25.257 6.574 16.012 1 29.36 ? N20 D4N 293 B 1 
HETATM 29 C C23 D4N . . . H 3 -26.153 6.39 17.161 1 29.44 ? C23 D4N 293 B 1 
HETATM 30 N N1 D4N . . . H 3 -25.149 9.128 17.294 1 30.11 ? N1 D4N 293 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#