data_3D4Q
#
_model_server_result.job_id            RcI-tbTh1l34RTrIcvlEVw 
_model_server_result.datetime_utc      '2024-12-26 21:07:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d4q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3D4Q 
#
_exptl.entry_id    3D4Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              373.451 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1E)-5-(1-piperidin-4-yl-3-pyridin-4-yl-1H-pyrazol-4-yl)-2,3-dihydro-1H-inden-1-one oxime' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3D4Q 
_cell.length_a            100.343 
_cell.length_b            100.343 
_cell.length_c            162.536 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D4Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H23 N5 O' 
_chem_comp.formula_weight    373.451 
_chem_comp.id                SM5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1E)-5-(1-piperidin-4-yl-3-pyridin-4-yl-1H-pyrazol-4-yl)-2,3-dihydro-1H-inden-1-one oxime' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 H18 SM5 sing 290 n n 
N4 C18 SM5 sing 291 n n 
N4 C5 SM5 sing 292 n y 
C14 H14 SM5 sing 293 n n 
C13 C14 SM5 sing 294 n y 
C13 H13 SM5 sing 295 n n 
C12 C13 SM5 doub 296 n y 
C17 C16 SM5 doub 297 n y 
C17 C12 SM5 sing 298 n y 
C17 H17 SM5 sing 299 n n 
C16 C15 SM5 sing 300 n y 
C15 C26 SM5 sing 301 n n 
C15 C14 SM5 doub 302 n y 
C11 H11 SM5 sing 303 n n 
N3 C2 SM5 doub 304 n y 
N3 N4 SM5 sing 305 n y 
C10 C11 SM5 sing 306 n y 
C10 H10 SM5 sing 307 n n 
C8 C7 SM5 doub 308 n y 
C8 N9 SM5 sing 309 n y 
C8 H8 SM5 sing 310 n n 
C22 H122 SM5 sing 311 n n 
C22 H222 SM5 sing 312 n n 
C7 C6 SM5 sing 313 n y 
C7 H7 SM5 sing 314 n n 
C5 H5 SM5 sing 315 n n 
C6 C2 SM5 sing 316 n y 
C6 C11 SM5 doub 317 n y 
C1 C5 SM5 doub 318 n y 
C1 C12 SM5 sing 319 n y 
C19 C20 SM5 sing 320 n n 
C19 C18 SM5 sing 321 n n 
C19 H119 SM5 sing 322 n n 
C19 H219 SM5 sing 323 n n 
C20 H120 SM5 sing 324 n n 
C20 H220 SM5 sing 325 n n 
C2 C1 SM5 sing 326 n y 
N9 C10 SM5 doub 327 n y 
N21 C22 SM5 sing 328 n n 
N21 C20 SM5 sing 329 n n 
C23 C22 SM5 sing 330 n n 
C23 C18 SM5 sing 331 n n 
C23 H123 SM5 sing 332 n n 
C23 H223 SM5 sing 333 n n 
C24 C16 SM5 sing 334 n n 
C24 C25 SM5 sing 335 n n 
C24 H24 SM5 sing 336 n n 
C25 C26 SM5 sing 337 n n 
C25 H25 SM5 sing 338 n n 
C26 N27 SM5 doub 339 n n 
N27 O28 SM5 sing 340 n n 
O28 HO28 SM5 sing 341 n n 
N21 H121 SM5 sing 342 e n 
C24 H22 SM5 sing 343 n n 
C25 H23 SM5 sing 344 n n 
#
_atom_sites.entry_id                     3D4Q 
_atom_sites.fract_transf_matrix[1][1]    0.009966 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SM5 A 1 1 1 SM5 SM5 . 
D 2 SM5 B 1 1 1 SM5 SM5 . 
E 3 HOH A 1 3 3 HOH TIP . 
E 3 HOH A 2 5 5 HOH TIP . 
E 3 HOH A 3 6 6 HOH TIP . 
E 3 HOH A 4 9 9 HOH TIP . 
E 3 HOH A 5 10 10 HOH TIP . 
E 3 HOH A 6 14 14 HOH TIP . 
E 3 HOH A 7 17 17 HOH TIP . 
E 3 HOH A 8 19 19 HOH TIP . 
E 3 HOH A 9 23 23 HOH TIP . 
F 3 HOH B 1 727 1 HOH TIP . 
F 3 HOH B 2 728 2 HOH TIP . 
F 3 HOH B 3 729 4 HOH TIP . 
F 3 HOH B 4 730 7 HOH TIP . 
F 3 HOH B 5 731 8 HOH TIP . 
F 3 HOH B 6 732 11 HOH TIP . 
F 3 HOH B 7 733 12 HOH TIP . 
F 3 HOH B 8 734 13 HOH TIP . 
F 3 HOH B 9 735 15 HOH TIP . 
F 3 HOH B 10 736 16 HOH TIP . 
F 3 HOH B 11 737 18 HOH TIP . 
F 3 HOH B 12 738 20 HOH TIP . 
F 3 HOH B 13 739 21 HOH TIP . 
F 3 HOH B 14 740 22 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 SM5 . . . D 2 61.079 32.883 -1.502 1 43.86 ? C18 SM5 1 B 1 
HETATM 2 N N4 SM5 . . . D 2 61.433 31.46 -1.416 1 46.75 ? N4 SM5 1 B 1 
HETATM 3 C C14 SM5 . . . D 2 58.844 26.498 -2.941 1 40.68 ? C14 SM5 1 B 1 
HETATM 4 C C13 SM5 . . . D 2 59.636 27.645 -2.728 1 41.27 ? C13 SM5 1 B 1 
HETATM 5 C C12 SM5 . . . D 2 60.572 27.687 -1.668 1 43.54 ? C12 SM5 1 B 1 
HETATM 6 C C17 SM5 . . . D 2 60.709 26.48 -0.758 1 44.95 ? C17 SM5 1 B 1 
HETATM 7 C C16 SM5 . . . D 2 59.853 25.318 -1.035 1 44.14 ? C16 SM5 1 B 1 
HETATM 8 C C15 SM5 . . . D 2 58.957 25.38 -2.104 1 42.75 ? C15 SM5 1 B 1 
HETATM 9 C C11 SM5 . . . D 2 63.544 27.005 -1.539 1 43.27 ? C11 SM5 1 B 1 
HETATM 10 N N3 SM5 . . . D 2 62.755 31.034 -1.18 1 45.08 ? N3 SM5 1 B 1 
HETATM 11 C C10 SM5 . . . D 2 64.624 26.054 -1.401 1 44.76 ? C10 SM5 1 B 1 
HETATM 12 C C8 SM5 . . . D 2 66.008 27.648 -0.428 1 46.78 ? C8 SM5 1 B 1 
HETATM 13 C C22 SM5 . . . D 2 61.579 35.301 -1.449 1 43.06 ? C22 SM5 1 B 1 
HETATM 14 C C7 SM5 . . . D 2 64.909 28.743 -0.524 1 44.34 ? C7 SM5 1 B 1 
HETATM 15 C C5 SM5 . . . D 2 60.51 30.432 -1.609 1 46.13 ? C5 SM5 1 B 1 
HETATM 16 C C6 SM5 . . . D 2 63.721 28.383 -1.077 1 44.13 ? C6 SM5 1 B 1 
HETATM 17 C C1 SM5 . . . D 2 61.318 28.957 -1.499 1 44.59 ? C1 SM5 1 B 1 
HETATM 18 C C19 SM5 . . . D 2 59.616 33.156 -1.086 1 42.63 ? C19 SM5 1 B 1 
HETATM 19 C C20 SM5 . . . D 2 59.139 34.541 -1.544 1 39.81 ? C20 SM5 1 B 1 
HETATM 20 C C2 SM5 . . . D 2 62.621 29.293 -1.249 1 44.78 ? C2 SM5 1 B 1 
HETATM 21 N N9 SM5 . . . D 2 65.84 26.357 -0.861 1 45.85 ? N9 SM5 1 B 1 
HETATM 22 N N21 SM5 . . . D 2 60.13 35.596 -1.124 1 41.7 ? N21 SM5 1 B 1 
HETATM 23 C C23 SM5 . . . D 2 61.973 33.778 -0.925 1 42.78 ? C23 SM5 1 B 1 
HETATM 24 C C24 SM5 . . . D 2 59.749 23.986 -0.322 1 44.45 ? C24 SM5 1 B 1 
HETATM 25 C C25 SM5 . . . D 2 58.562 23.202 -1.184 1 42.51 ? C25 SM5 1 B 1 
HETATM 26 C C26 SM5 . . . D 2 58.191 24.22 -2.265 1 43.72 ? C26 SM5 1 B 1 
HETATM 27 N N27 SM5 . . . D 2 57.429 24.111 -3.109 1 44.19 ? N27 SM5 1 B 1 
HETATM 28 O O28 SM5 . . . D 2 56.82 22.848 -3.048 1 48.9 ? O28 SM5 1 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#