data_3D4S # _model_server_result.job_id mYxMglA1nJVGLNZxokWDpA _model_server_result.datetime_utc '2024-11-23 22:36:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3D4S # _exptl.entry_id 3D4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.42 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-1-(tert-butylamino)-3-[(4-morpholin-4-yl-1,2,5-thiadiazol-3-yl)oxy]propan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D4S _cell.length_a 40 _cell.length_b 75.7 _cell.length_c 172.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C13 H24 N4 O3 S' _chem_comp.formula_weight 316.42 _chem_comp.id TIM _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-1-(tert-butylamino)-3-[(4-morpholin-4-yl-1,2,5-thiadiazol-3-yl)oxy]propan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Timolol maleate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 TIM sing 447 n n C5 N4 TIM sing 448 n n C5 H5 TIM sing 449 n n C5 H5A TIM sing 450 n n C6 O1 TIM sing 451 n n C6 H6 TIM sing 452 n n C6 H6A TIM sing 453 n n O1 C2 TIM sing 454 n n C2 C3 TIM sing 455 n n C2 H2 TIM sing 456 n n C2 H2A TIM sing 457 n n C3 N4 TIM sing 458 n n C3 H3 TIM sing 459 n n C3 H3A TIM sing 460 n n N4 C7 TIM sing 461 n n C7 N8 TIM doub 462 n y C7 C11 TIM sing 463 n y N8 S9 TIM sing 464 n y S9 N10 TIM sing 465 n y N10 C11 TIM doub 466 n y C11 O12 TIM sing 467 n n O12 C13 TIM sing 468 n n C13 C14 TIM sing 469 n n C13 H13 TIM sing 470 n n C13 H13A TIM sing 471 n n C14 O15 TIM sing 472 n n C14 C16 TIM sing 473 n n C14 H14 TIM sing 474 n n O15 HO15 TIM sing 475 n n C16 N17 TIM sing 476 n n C16 H16 TIM sing 477 n n C16 H16A TIM sing 478 n n N17 C18 TIM sing 479 n n N17 HN17 TIM sing 480 n n C18 C19 TIM sing 481 n n C18 C20 TIM sing 482 n n C18 C21 TIM sing 483 n n C19 H19 TIM sing 484 n n C19 H19A TIM sing 485 n n C19 H19B TIM sing 486 n n C20 H20 TIM sing 487 n n C20 H20A TIM sing 488 n n C20 H20B TIM sing 489 n n C21 H21 TIM sing 490 n n C21 H21A TIM sing 491 n n C21 H21B TIM sing 492 n n # _atom_sites.entry_id 3D4S _atom_sites.fract_transf_matrix[1][1] 0.025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TIM A 1 401 401 TIM TIM . C 3 CLR A 1 402 402 CLR CLR . D 3 CLR A 1 403 403 CLR CLR . E 4 OLC A 1 404 404 OLC OLC . F 4 OLC A 1 405 405 OLC OLC . G 4 OLC A 1 406 406 OLC OLC . H 5 HOH A 1 501 501 HOH HOH . H 5 HOH A 2 502 502 HOH HOH . H 5 HOH A 3 503 503 HOH HOH . H 5 HOH A 4 504 504 HOH HOH . H 5 HOH A 5 505 505 HOH HOH . H 5 HOH A 6 506 506 HOH HOH . H 5 HOH A 7 507 507 HOH HOH . H 5 HOH A 8 508 508 HOH HOH . H 5 HOH A 9 509 509 HOH HOH . H 5 HOH A 10 510 510 HOH HOH . H 5 HOH A 11 511 511 HOH HOH . H 5 HOH A 12 512 512 HOH HOH . H 5 HOH A 13 513 513 HOH HOH . H 5 HOH A 14 514 514 HOH HOH . H 5 HOH A 15 515 515 HOH HOH . H 5 HOH A 16 516 516 HOH HOH . H 5 HOH A 17 517 517 HOH HOH . H 5 HOH A 18 518 518 HOH HOH . H 5 HOH A 19 519 519 HOH HOH . H 5 HOH A 20 520 520 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 TIM . . . B 2 3.037 1.145 51.139 1 45.16 ? C5 TIM 401 A 1 HETATM 2 C C6 TIM . . . B 2 3.227 1.181 52.657 1 57.05 ? C6 TIM 401 A 1 HETATM 3 O O1 TIM . . . B 2 2.525 0.109 53.257 1 58.33 ? O1 TIM 401 A 1 HETATM 4 C C2 TIM . . . B 2 1.125 0.224 53.044 1 53.51 ? C2 TIM 401 A 1 HETATM 5 C C3 TIM . . . B 2 0.71 0.379 51.57 1 51.17 ? C3 TIM 401 A 1 HETATM 6 N N4 TIM . . . B 2 1.64 1.118 50.754 1 50.77 ? N4 TIM 401 A 1 HETATM 7 C C7 TIM . . . B 2 1.306 1.594 49.509 1 53.55 ? C7 TIM 401 A 1 HETATM 8 N N8 TIM . . . B 2 0.645 0.822 48.631 1 58.54 ? N8 TIM 401 A 1 HETATM 9 S S9 TIM . . . B 2 0.376 1.667 47.251 1 55.87 ? S9 TIM 401 A 1 HETATM 10 N N10 TIM . . . B 2 1.084 3.083 47.666 1 49.53 ? N10 TIM 401 A 1 HETATM 11 C C11 TIM . . . B 2 1.554 2.967 48.898 1 52.8 ? C11 TIM 401 A 1 HETATM 12 O O12 TIM . . . B 2 2.233 3.973 49.543 1 52.38 ? O12 TIM 401 A 1 HETATM 13 C C13 TIM . . . B 2 2.227 5.3 48.941 1 43.69 ? C13 TIM 401 A 1 HETATM 14 C C14 TIM . . . B 2 3.213 6.032 49.863 1 42.67 ? C14 TIM 401 A 1 HETATM 15 O O15 TIM . . . B 2 3.888 7.083 49.235 1 42.1 ? O15 TIM 401 A 1 HETATM 16 C C16 TIM . . . B 2 2.48 6.515 51.102 1 44.11 ? C16 TIM 401 A 1 HETATM 17 N N17 TIM . . . B 2 3.043 7.593 51.881 1 48.54 ? N17 TIM 401 A 1 HETATM 18 C C18 TIM . . . B 2 2.542 7.436 53.27 1 41.41 ? C18 TIM 401 A 1 HETATM 19 C C19 TIM . . . B 2 2.6 8.757 54.024 1 44.38 ? C19 TIM 401 A 1 HETATM 20 C C20 TIM . . . B 2 1.067 6.963 53.216 1 36.66 ? C20 TIM 401 A 1 HETATM 21 C C21 TIM . . . B 2 3.404 6.393 54.011 1 46.82 ? C21 TIM 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 21 #