data_3D4S # _model_server_result.job_id xVrX2cW0U_kodKZxRAJTyw _model_server_result.datetime_utc '2024-11-23 22:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 3D4S # _exptl.entry_id 3D4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D4S _cell.length_a 40 _cell.length_b 75.7 _cell.length_c 172.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 3D4S _atom_sites.fract_transf_matrix[1][1] 0.025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TIM A 1 401 401 TIM TIM . C 3 CLR A 1 402 402 CLR CLR . D 3 CLR A 1 403 403 CLR CLR . E 4 OLC A 1 404 404 OLC OLC . F 4 OLC A 1 405 405 OLC OLC . G 4 OLC A 1 406 406 OLC OLC . H 5 HOH A 1 501 501 HOH HOH . H 5 HOH A 2 502 502 HOH HOH . H 5 HOH A 3 503 503 HOH HOH . H 5 HOH A 4 504 504 HOH HOH . H 5 HOH A 5 505 505 HOH HOH . H 5 HOH A 6 506 506 HOH HOH . H 5 HOH A 7 507 507 HOH HOH . H 5 HOH A 8 508 508 HOH HOH . H 5 HOH A 9 509 509 HOH HOH . H 5 HOH A 10 510 510 HOH HOH . H 5 HOH A 11 511 511 HOH HOH . H 5 HOH A 12 512 512 HOH HOH . H 5 HOH A 13 513 513 HOH HOH . H 5 HOH A 14 514 514 HOH HOH . H 5 HOH A 15 515 515 HOH HOH . H 5 HOH A 16 516 516 HOH HOH . H 5 HOH A 17 517 517 HOH HOH . H 5 HOH A 18 518 518 HOH HOH . H 5 HOH A 19 519 519 HOH HOH . H 5 HOH A 20 520 520 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . D 3 -8.121 14.107 31.634 1 84.56 ? C1 CLR 403 A 1 HETATM 2 C C2 CLR . . . D 3 -8.212 14.2 30.127 1 83.85 ? C2 CLR 403 A 1 HETATM 3 C C3 CLR . . . D 3 -9.553 13.678 29.625 1 94.93 ? C3 CLR 403 A 1 HETATM 4 C C4 CLR . . . D 3 -10.749 14.338 30.331 1 105.51 ? C4 CLR 403 A 1 HETATM 5 C C5 CLR . . . D 3 -10.581 14.44 31.815 1 100.18 ? C5 CLR 403 A 1 HETATM 6 C C6 CLR . . . D 3 -11.607 14.116 32.631 1 97.65 ? C6 CLR 403 A 1 HETATM 7 C C7 CLR . . . D 3 -11.557 14.191 34.11 1 99.27 ? C7 CLR 403 A 1 HETATM 8 C C8 CLR . . . D 3 -10.479 15.183 34.554 1 104.3 ? C8 CLR 403 A 1 HETATM 9 C C9 CLR . . . D 3 -9.15 14.876 33.865 1 99.4 ? C9 CLR 403 A 1 HETATM 10 C C10 CLR . . . D 3 -9.238 14.912 32.32 1 97.5 ? C10 CLR 403 A 1 HETATM 11 C C11 CLR . . . D 3 -7.985 15.697 34.416 1 90.37 ? C11 CLR 403 A 1 HETATM 12 C C12 CLR . . . D 3 -7.876 15.674 35.917 1 90.48 ? C12 CLR 403 A 1 HETATM 13 C C13 CLR . . . D 3 -9.153 16.076 36.646 1 100.58 ? C13 CLR 403 A 1 HETATM 14 C C14 CLR . . . D 3 -10.279 15.201 36.064 1 102.02 ? C14 CLR 403 A 1 HETATM 15 C C15 CLR . . . D 3 -11.365 15.063 37.124 1 102.61 ? C15 CLR 403 A 1 HETATM 16 C C16 CLR . . . D 3 -10.628 15.326 38.44 1 105.07 ? C16 CLR 403 A 1 HETATM 17 C C17 CLR . . . D 3 -9.138 15.576 38.126 1 101.88 ? C17 CLR 403 A 1 HETATM 18 C C18 CLR . . . D 3 -9.481 17.556 36.506 1 97.7 ? C18 CLR 403 A 1 HETATM 19 C C19 CLR . . . D 3 -9.038 16.385 31.917 1 101.23 ? C19 CLR 403 A 1 HETATM 20 C C20 CLR . . . D 3 -8.409 16.443 39.168 1 97.19 ? C20 CLR 403 A 1 HETATM 21 C C21 CLR . . . D 3 -6.952 16.709 38.822 1 98.69 ? C21 CLR 403 A 1 HETATM 22 C C22 CLR . . . D 3 -8.467 15.822 40.553 1 98.4 ? C22 CLR 403 A 1 HETATM 23 C C23 CLR . . . D 3 -8.822 16.838 41.622 1 93.67 ? C23 CLR 403 A 1 HETATM 24 C C24 CLR . . . D 3 -8.633 16.202 42.985 1 90.76 ? C24 CLR 403 A 1 HETATM 25 C C25 CLR . . . D 3 -7.737 17.025 43.907 1 83.37 ? C25 CLR 403 A 1 HETATM 26 C C26 CLR . . . D 3 -6.271 16.716 43.664 1 71.48 ? C26 CLR 403 A 1 HETATM 27 C C27 CLR . . . D 3 -8.126 16.804 45.356 1 74.85 ? C27 CLR 403 A 1 HETATM 28 O O1 CLR . . . D 3 -9.707 13.958 28.237 1 85.27 ? O1 CLR 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 932 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #