data_3D4S # _model_server_result.job_id 1kwCIMcqalFFVIJW0LB3DA _model_server_result.datetime_utc '2024-11-06 00:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 3D4S # _exptl.entry_id 3D4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D4S _cell.length_a 40 _cell.length_b 75.7 _cell.length_c 172.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 314 n n C10 C9 OLC doub 315 n n C10 C11 OLC sing 316 n n C9 C8 OLC sing 317 n n C17 C16 OLC sing 318 z n C11 C12 OLC sing 319 n n C8 C7 OLC sing 320 n n C24 C22 OLC sing 321 n n C24 O25 OLC sing 322 n n C16 C15 OLC sing 323 n n C12 C13 OLC sing 324 n n C7 C6 OLC sing 325 n n C15 C14 OLC sing 326 n n C13 C14 OLC sing 327 n n C6 C5 OLC sing 328 n n C5 C4 OLC sing 329 n n C4 C3 OLC sing 330 n n C3 C2 OLC sing 331 n n C2 C1 OLC sing 332 n n C21 C22 OLC sing 333 n n C21 O20 OLC sing 334 n n C1 O19 OLC doub 335 n n C1 O20 OLC sing 336 n n C22 O23 OLC sing 337 n n C18 H18 OLC sing 338 n n C18 H18A OLC sing 339 n n C18 H18B OLC sing 340 n n C10 H10 OLC sing 341 n n C9 H9 OLC sing 342 n n C17 H17 OLC sing 343 n n C17 H17A OLC sing 344 n n C11 H11 OLC sing 345 n n C11 H11A OLC sing 346 n n C8 H8 OLC sing 347 n n C8 H8A OLC sing 348 n n C24 H24 OLC sing 349 n n C24 H24A OLC sing 350 n n C16 H16 OLC sing 351 n n C16 H16A OLC sing 352 n n C12 H12 OLC sing 353 n n C12 H12A OLC sing 354 n n C7 H7 OLC sing 355 n n C7 H7A OLC sing 356 n n C15 H15 OLC sing 357 n n C15 H15A OLC sing 358 n n C13 H13 OLC sing 359 n n C13 H13A OLC sing 360 n n C6 H6 OLC sing 361 n n C6 H6A OLC sing 362 n n C14 H14 OLC sing 363 n n C14 H14A OLC sing 364 n n C5 H5 OLC sing 365 n n C5 H5A OLC sing 366 n n C4 H4 OLC sing 367 n n C4 H4A OLC sing 368 n n C3 H3 OLC sing 369 n n C3 H3A OLC sing 370 n n C2 H2 OLC sing 371 n n C2 H2A OLC sing 372 n n C21 H21 OLC sing 373 n n C21 H21A OLC sing 374 n n C22 H22 OLC sing 375 n n O25 HO25 OLC sing 376 n n O23 HO23 OLC sing 377 n n # _atom_sites.entry_id 3D4S _atom_sites.fract_transf_matrix[1][1] 0.025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TIM A 1 401 401 TIM TIM . C 3 CLR A 1 402 402 CLR CLR . D 3 CLR A 1 403 403 CLR CLR . E 4 OLC A 1 404 404 OLC OLC . F 4 OLC A 1 405 405 OLC OLC . G 4 OLC A 1 406 406 OLC OLC . H 5 HOH A 1 501 501 HOH HOH . H 5 HOH A 2 502 502 HOH HOH . H 5 HOH A 3 503 503 HOH HOH . H 5 HOH A 4 504 504 HOH HOH . H 5 HOH A 5 505 505 HOH HOH . H 5 HOH A 6 506 506 HOH HOH . H 5 HOH A 7 507 507 HOH HOH . H 5 HOH A 8 508 508 HOH HOH . H 5 HOH A 9 509 509 HOH HOH . H 5 HOH A 10 510 510 HOH HOH . H 5 HOH A 11 511 511 HOH HOH . H 5 HOH A 12 512 512 HOH HOH . H 5 HOH A 13 513 513 HOH HOH . H 5 HOH A 14 514 514 HOH HOH . H 5 HOH A 15 515 515 HOH HOH . H 5 HOH A 16 516 516 HOH HOH . H 5 HOH A 17 517 517 HOH HOH . H 5 HOH A 18 518 518 HOH HOH . H 5 HOH A 19 519 519 HOH HOH . H 5 HOH A 20 520 520 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . G 4 9.815 24.797 33.112 1 68.69 ? C18 OLC 406 A 1 HETATM 2 C C10 OLC . . . G 4 3.997 26.554 37.831 1 64.22 ? C10 OLC 406 A 1 HETATM 3 C C9 OLC . . . G 4 2.686 26.279 37.703 1 56.96 ? C9 OLC 406 A 1 HETATM 4 C C17 OLC . . . G 4 10.157 24.856 34.58 1 79.29 ? C17 OLC 406 A 1 HETATM 5 C C11 OLC . . . G 4 4.924 27.064 36.78 1 67.21 ? C11 OLC 406 A 1 HETATM 6 C C8 OLC . . . G 4 1.862 26.426 36.473 1 54.99 ? C8 OLC 406 A 1 HETATM 7 C C24 OLC . . . G 4 -4.187 26.086 26.853 1 60.65 ? C24 OLC 406 A 1 HETATM 8 C C16 OLC . . . G 4 9.666 26.151 35.201 1 83.25 ? C16 OLC 406 A 1 HETATM 9 C C12 OLC . . . G 4 6.115 26.138 36.63 1 72.68 ? C12 OLC 406 A 1 HETATM 10 C C7 OLC . . . G 4 0.692 25.461 36.482 1 61.38 ? C7 OLC 406 A 1 HETATM 11 C C15 OLC . . . G 4 9.721 26.117 36.718 1 77.45 ? C15 OLC 406 A 1 HETATM 12 C C13 OLC . . . G 4 7.332 26.624 37.393 1 79.5 ? C13 OLC 406 A 1 HETATM 13 C C6 OLC . . . G 4 -0.225 25.675 35.289 1 68.25 ? C6 OLC 406 A 1 HETATM 14 C C14 OLC . . . G 4 8.441 25.585 37.333 1 69.86 ? C14 OLC 406 A 1 HETATM 15 C C5 OLC . . . G 4 0.058 24.727 34.134 1 69.96 ? C5 OLC 406 A 1 HETATM 16 C C4 OLC . . . G 4 0.7 25.423 32.95 1 66.69 ? C4 OLC 406 A 1 HETATM 17 C C3 OLC . . . G 4 -0.333 25.907 31.951 1 66.31 ? C3 OLC 406 A 1 HETATM 18 C C2 OLC . . . G 4 0.297 26.144 30.591 1 70.31 ? C2 OLC 406 A 1 HETATM 19 C C21 OLC . . . G 4 -2.285 25.839 28.418 1 77.11 ? C21 OLC 406 A 1 HETATM 20 C C1 OLC . . . G 4 -0.277 25.198 29.581 1 79.39 ? C1 OLC 406 A 1 HETATM 21 C C22 OLC . . . G 4 -2.661 25.99 26.939 1 69.01 ? C22 OLC 406 A 1 HETATM 22 O O19 OLC . . . G 4 -0.117 23.979 29.52 1 79.6 ? O19 OLC 406 A 1 HETATM 23 O O25 OLC . . . G 4 -4.557 26.102 25.49 1 66.28 ? O25 OLC 406 A 1 HETATM 24 O O23 OLC . . . G 4 -2.107 27.176 26.4 1 58.68 ? O23 OLC 406 A 1 HETATM 25 O O20 OLC . . . G 4 -0.852 25.836 28.512 1 79.12 ? O20 OLC 406 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #