data_3D4W
#
_model_server_result.job_id            wVHn8mSBB9c5BPEwD2cQVg 
_model_server_result.datetime_utc      '2024-10-19 15:28:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d4w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":151}' 
#
_entry.id    3D4W 
#
_exptl.entry_id    3D4W 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3D4W 
_cell.length_a            34.09 
_cell.length_b            59.843 
_cell.length_c            73.558 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3D4W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 224 n n 
C1 H11 MPD sing 225 n n 
C1 H12 MPD sing 226 n n 
C1 H13 MPD sing 227 n n 
C2 O2 MPD sing 228 n n 
C2 CM MPD sing 229 n n 
C2 C3 MPD sing 230 n n 
O2 HO2 MPD sing 231 n n 
CM HM1 MPD sing 232 n n 
CM HM2 MPD sing 233 n n 
CM HM3 MPD sing 234 n n 
C3 C4 MPD sing 235 n n 
C3 H31 MPD sing 236 n n 
C3 H32 MPD sing 237 n n 
C4 O4 MPD sing 238 n n 
C4 C5 MPD sing 239 n n 
C4 H4 MPD sing 240 n n 
O4 HO4 MPD sing 241 n n 
C5 H51 MPD sing 242 n n 
C5 H52 MPD sing 243 n n 
C5 H53 MPD sing 244 n n 
#
_atom_sites.entry_id                     3D4W 
_atom_sites.fract_transf_matrix[1][1]    0.029334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01671 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013595 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 150 1 PO4 PO4 . 
C 3 MPD A 1 151 1 MPD MPD . 
D 4 HOH A 1 152 1 HOH HOH . 
D 4 HOH A 2 153 2 HOH HOH . 
D 4 HOH A 3 154 3 HOH HOH . 
D 4 HOH A 4 155 4 HOH HOH . 
D 4 HOH A 5 156 5 HOH HOH . 
D 4 HOH A 6 157 6 HOH HOH . 
D 4 HOH A 7 158 7 HOH HOH . 
D 4 HOH A 8 159 8 HOH HOH . 
D 4 HOH A 9 160 9 HOH HOH . 
D 4 HOH A 10 161 10 HOH HOH . 
D 4 HOH A 11 162 11 HOH HOH . 
D 4 HOH A 12 163 12 HOH HOH . 
D 4 HOH A 13 164 13 HOH HOH . 
D 4 HOH A 14 165 14 HOH HOH . 
D 4 HOH A 15 166 15 HOH HOH . 
D 4 HOH A 16 167 16 HOH HOH . 
D 4 HOH A 17 168 17 HOH HOH . 
D 4 HOH A 18 169 18 HOH HOH . 
D 4 HOH A 19 170 19 HOH HOH . 
D 4 HOH A 20 171 20 HOH HOH . 
D 4 HOH A 21 172 21 HOH HOH . 
D 4 HOH A 22 173 22 HOH HOH . 
D 4 HOH A 23 174 23 HOH HOH . 
D 4 HOH A 24 175 24 HOH HOH . 
D 4 HOH A 25 176 25 HOH HOH . 
D 4 HOH A 26 177 26 HOH HOH . 
D 4 HOH A 27 178 27 HOH HOH . 
D 4 HOH A 28 179 28 HOH HOH . 
D 4 HOH A 29 180 29 HOH HOH . 
D 4 HOH A 30 181 30 HOH HOH . 
D 4 HOH A 31 182 31 HOH HOH . 
D 4 HOH A 32 183 32 HOH HOH . 
D 4 HOH A 33 184 33 HOH HOH . 
D 4 HOH A 34 185 34 HOH HOH . 
D 4 HOH A 35 186 35 HOH HOH . 
D 4 HOH A 36 187 36 HOH HOH . 
D 4 HOH A 37 188 37 HOH HOH . 
D 4 HOH A 38 189 38 HOH HOH . 
D 4 HOH A 39 190 39 HOH HOH . 
D 4 HOH A 40 191 40 HOH HOH . 
D 4 HOH A 41 192 41 HOH HOH . 
D 4 HOH A 42 193 42 HOH HOH . 
D 4 HOH A 43 194 43 HOH HOH . 
D 4 HOH A 44 195 44 HOH HOH . 
D 4 HOH A 45 196 45 HOH HOH . 
D 4 HOH A 46 197 46 HOH HOH . 
D 4 HOH A 47 198 47 HOH HOH . 
D 4 HOH A 48 199 48 HOH HOH . 
D 4 HOH A 49 200 49 HOH HOH . 
D 4 HOH A 50 201 50 HOH HOH . 
D 4 HOH A 51 202 51 HOH HOH . 
D 4 HOH A 52 203 52 HOH HOH . 
D 4 HOH A 53 204 53 HOH HOH . 
D 4 HOH A 54 205 54 HOH HOH . 
D 4 HOH A 55 206 55 HOH HOH . 
D 4 HOH A 56 207 56 HOH HOH . 
D 4 HOH A 57 208 57 HOH HOH . 
D 4 HOH A 58 209 58 HOH HOH . 
D 4 HOH A 59 210 59 HOH HOH . 
D 4 HOH A 60 211 60 HOH HOH . 
D 4 HOH A 61 212 61 HOH HOH . 
D 4 HOH A 62 213 62 HOH HOH . 
D 4 HOH A 63 214 63 HOH HOH . 
D 4 HOH A 64 215 64 HOH HOH . 
D 4 HOH A 65 216 65 HOH HOH . 
D 4 HOH A 66 217 66 HOH HOH . 
D 4 HOH A 67 218 67 HOH HOH . 
D 4 HOH A 68 219 68 HOH HOH . 
D 4 HOH A 69 220 69 HOH HOH . 
D 4 HOH A 70 221 70 HOH HOH . 
D 4 HOH A 71 222 71 HOH HOH . 
D 4 HOH A 72 223 72 HOH HOH . 
D 4 HOH A 73 224 73 HOH HOH . 
D 4 HOH A 74 225 74 HOH HOH . 
D 4 HOH A 75 226 75 HOH HOH . 
D 4 HOH A 76 227 76 HOH HOH . 
D 4 HOH A 77 228 77 HOH HOH . 
D 4 HOH A 78 229 78 HOH HOH . 
D 4 HOH A 79 230 79 HOH HOH . 
D 4 HOH A 80 231 80 HOH HOH . 
D 4 HOH A 81 232 81 HOH HOH . 
D 4 HOH A 82 233 82 HOH HOH . 
D 4 HOH A 83 234 84 HOH HOH . 
D 4 HOH A 84 235 85 HOH HOH . 
D 4 HOH A 85 236 86 HOH HOH . 
D 4 HOH A 86 237 87 HOH HOH . 
D 4 HOH A 87 238 88 HOH HOH . 
D 4 HOH A 88 239 89 HOH HOH . 
D 4 HOH A 89 240 90 HOH HOH . 
D 4 HOH A 90 241 91 HOH HOH . 
D 4 HOH A 91 242 92 HOH HOH . 
D 4 HOH A 92 243 93 HOH HOH . 
D 4 HOH A 93 244 94 HOH HOH . 
D 4 HOH A 94 245 95 HOH HOH . 
D 4 HOH A 95 246 96 HOH HOH . 
D 4 HOH A 96 247 97 HOH HOH . 
D 4 HOH A 97 248 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 22.016 -2.563 7.486 1 32.1 ? C1 MPD 151 A 1 
HETATM 2 C C2 MPD . . . C 3 22.973 -3.182 8.499 1 33.14 ? C2 MPD 151 A 1 
HETATM 3 O O2 MPD . . . C 3 24.286 -2.587 8.327 1 32.58 ? O2 MPD 151 A 1 
HETATM 4 C CM MPD . . . C 3 22.466 -2.809 9.889 1 31.86 ? CM MPD 151 A 1 
HETATM 5 C C3 MPD . . . C 3 23.004 -4.705 8.314 1 33.68 ? C3 MPD 151 A 1 
HETATM 6 C C4 MPD . . . C 3 24.263 -5.332 7.687 1 35.92 ? C4 MPD 151 A 1 
HETATM 7 O O4 MPD . . . C 3 24.038 -6.73 7.554 1 38.52 ? O4 MPD 151 A 1 
HETATM 8 C C5 MPD . . . C 3 24.645 -4.809 6.304 1 33.98 ? C5 MPD 151 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#