data_3D5F
#
_model_server_result.job_id            Ly-zZgWbsEomwIKVmno3kg 
_model_server_result.datetime_utc      '2024-11-22 21:13:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    3D5F 
#
_exptl.entry_id    3D5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.438 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{4-[3-(4-acetyl-3-hydroxy-2-propylphenoxy)propoxy]phenoxy}acetic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.02 
_cell.angle_gamma         90 
_cell.entry_id            3D5F 
_cell.length_a            39.456 
_cell.length_b            92.829 
_cell.length_c            96.454 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 1 2 
A,C,E 2 1 
B,D,F 3 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 25.998857 46.4145 95.510625 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H26 O7' 
_chem_comp.formula_weight    402.438 
_chem_comp.id                L41 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{4-[3-(4-acetyl-3-hydroxy-2-propylphenoxy)propoxy]phenoxy}acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C1 L41 sing 173 n y 
C2 C1 L41 doub 174 n y 
C1 C4 L41 sing 175 n n 
C5 C2 L41 sing 176 n y 
C2 O6 L41 sing 177 n n 
C7 C3 L41 doub 178 n y 
C3 O8 L41 sing 179 n n 
C4 C9 L41 sing 180 n n 
C4 H4 L41 sing 181 n n 
C4 H4A L41 sing 182 n n 
C10 C5 L41 doub 183 n y 
C5 H5 L41 sing 184 n n 
C11 O6 L41 sing 185 n n 
C12 C7 L41 sing 186 n n 
C10 C7 L41 sing 187 n y 
O8 HO8 L41 sing 188 n n 
C9 C13 L41 sing 189 n n 
C9 H9 L41 sing 190 n n 
C9 H9A L41 sing 191 n n 
C10 H10 L41 sing 192 n n 
C11 C14 L41 sing 193 n n 
C11 H11 L41 sing 194 n n 
C11 H11A L41 sing 195 n n 
C15 C12 L41 sing 196 n n 
C12 O16 L41 doub 197 n n 
C13 H13 L41 sing 198 n n 
C13 H13A L41 sing 199 n n 
C13 H13B L41 sing 200 n n 
C14 C17 L41 sing 201 n n 
C14 H14 L41 sing 202 n n 
C14 H14A L41 sing 203 n n 
C15 H15 L41 sing 204 n n 
C15 H15A L41 sing 205 n n 
C15 H15B L41 sing 206 n n 
O18 C17 L41 sing 207 n n 
C17 H17 L41 sing 208 n n 
C17 H17A L41 sing 209 n n 
C19 O18 L41 sing 210 n n 
C20 C19 L41 doub 211 n y 
C19 C21 L41 sing 212 n y 
C22 C20 L41 sing 213 n y 
C20 H20 L41 sing 214 n n 
C23 C21 L41 doub 215 n y 
C21 H21 L41 sing 216 n n 
C22 C24 L41 doub 217 n y 
C22 H22 L41 sing 218 n n 
C24 C23 L41 sing 219 n y 
C23 H23 L41 sing 220 n n 
O25 C24 L41 sing 221 n n 
O25 C26 L41 sing 222 n n 
C26 C27 L41 sing 223 n n 
C26 H26 L41 sing 224 n n 
C26 H26A L41 sing 225 n n 
C27 O29 L41 doub 226 n n 
C27 O28 L41 sing 227 n n 
O28 HO28 L41 sing 228 n n 
#
_atom_sites.entry_id                     3D5F 
_atom_sites.fract_transf_matrix[1][1]    0.025345 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003571 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01047 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 L41 A 1 501 501 L41 L41 . 
D 2 L41 B 1 501 501 L41 L41 . 
E 3 HOH A 1 3 3 HOH HOH . 
E 3 HOH A 2 8 8 HOH HOH . 
E 3 HOH A 3 13 13 HOH HOH . 
E 3 HOH A 4 14 14 HOH HOH . 
E 3 HOH A 5 16 16 HOH HOH . 
E 3 HOH A 6 17 17 HOH HOH . 
E 3 HOH A 7 19 19 HOH HOH . 
E 3 HOH A 8 20 20 HOH HOH . 
E 3 HOH A 9 22 22 HOH HOH . 
E 3 HOH A 10 23 23 HOH HOH . 
E 3 HOH A 11 24 24 HOH HOH . 
E 3 HOH A 12 25 25 HOH HOH . 
E 3 HOH A 13 26 26 HOH HOH . 
E 3 HOH A 14 28 28 HOH HOH . 
E 3 HOH A 15 29 29 HOH HOH . 
E 3 HOH A 16 30 30 HOH HOH . 
E 3 HOH A 17 32 32 HOH HOH . 
E 3 HOH A 18 33 33 HOH HOH . 
E 3 HOH A 19 35 35 HOH HOH . 
E 3 HOH A 20 36 36 HOH HOH . 
E 3 HOH A 21 38 38 HOH HOH . 
E 3 HOH A 22 39 39 HOH HOH . 
E 3 HOH A 23 40 40 HOH HOH . 
E 3 HOH A 24 42 42 HOH HOH . 
E 3 HOH A 25 46 46 HOH HOH . 
E 3 HOH A 26 48 48 HOH HOH . 
E 3 HOH A 27 53 53 HOH HOH . 
E 3 HOH A 28 56 56 HOH HOH . 
E 3 HOH A 29 57 57 HOH HOH . 
E 3 HOH A 30 59 59 HOH HOH . 
E 3 HOH A 31 60 60 HOH HOH . 
E 3 HOH A 32 61 61 HOH HOH . 
E 3 HOH A 33 67 67 HOH HOH . 
E 3 HOH A 34 72 72 HOH HOH . 
E 3 HOH A 35 77 77 HOH HOH . 
E 3 HOH A 36 81 81 HOH HOH . 
E 3 HOH A 37 84 84 HOH HOH . 
E 3 HOH A 38 86 86 HOH HOH . 
E 3 HOH A 39 87 87 HOH HOH . 
E 3 HOH A 40 89 89 HOH HOH . 
E 3 HOH A 41 91 91 HOH HOH . 
E 3 HOH A 42 92 92 HOH HOH . 
E 3 HOH A 43 93 93 HOH HOH . 
E 3 HOH A 44 95 95 HOH HOH . 
E 3 HOH A 45 99 99 HOH HOH . 
E 3 HOH A 46 100 100 HOH HOH . 
E 3 HOH A 47 103 103 HOH HOH . 
E 3 HOH A 48 106 106 HOH HOH . 
E 3 HOH A 49 107 107 HOH HOH . 
E 3 HOH A 50 108 108 HOH HOH . 
F 3 HOH B 1 1 1 HOH HOH . 
F 3 HOH B 2 6 6 HOH HOH . 
F 3 HOH B 3 9 9 HOH HOH . 
F 3 HOH B 4 10 10 HOH HOH . 
F 3 HOH B 5 11 11 HOH HOH . 
F 3 HOH B 6 15 15 HOH HOH . 
F 3 HOH B 7 18 18 HOH HOH . 
F 3 HOH B 8 21 21 HOH HOH . 
F 3 HOH B 9 27 27 HOH HOH . 
F 3 HOH B 10 31 31 HOH HOH . 
F 3 HOH B 11 34 34 HOH HOH . 
F 3 HOH B 12 43 43 HOH HOH . 
F 3 HOH B 13 44 44 HOH HOH . 
F 3 HOH B 14 45 45 HOH HOH . 
F 3 HOH B 15 47 47 HOH HOH . 
F 3 HOH B 16 50 50 HOH HOH . 
F 3 HOH B 17 51 51 HOH HOH . 
F 3 HOH B 18 52 52 HOH HOH . 
F 3 HOH B 19 54 54 HOH HOH . 
F 3 HOH B 20 58 58 HOH HOH . 
F 3 HOH B 21 62 62 HOH HOH . 
F 3 HOH B 22 63 63 HOH HOH . 
F 3 HOH B 23 64 64 HOH HOH . 
F 3 HOH B 24 65 65 HOH HOH . 
F 3 HOH B 25 66 66 HOH HOH . 
F 3 HOH B 26 68 68 HOH HOH . 
F 3 HOH B 27 69 69 HOH HOH . 
F 3 HOH B 28 70 70 HOH HOH . 
F 3 HOH B 29 78 78 HOH HOH . 
F 3 HOH B 30 85 85 HOH HOH . 
F 3 HOH B 31 90 90 HOH HOH . 
F 3 HOH B 32 94 94 HOH HOH . 
F 3 HOH B 33 96 96 HOH HOH . 
F 3 HOH B 34 98 98 HOH HOH . 
F 3 HOH B 35 101 101 HOH HOH . 
F 3 HOH B 36 104 104 HOH HOH . 
F 3 HOH B 37 105 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 L41 . . . D 2 0.089 1.627 9.54 1 27.75 ? C1 L41 501 B 1 
HETATM 2 C C2 L41 . . . D 2 -0.859 2.654 9.36 1 26.41 ? C2 L41 501 B 1 
HETATM 3 C C3 L41 . . . D 2 0.83 1.118 8.428 1 30.28 ? C3 L41 501 B 1 
HETATM 4 C C4 L41 . . . D 2 0.305 1.091 10.944 1 29.47 ? C4 L41 501 B 1 
HETATM 5 C C5 L41 . . . D 2 -1.098 3.208 8.082 1 30.29 ? C5 L41 501 B 1 
HETATM 6 O O6 L41 . . . D 2 -1.521 3.064 10.508 1 25.87 ? O6 L41 501 B 1 
HETATM 7 C C7 L41 . . . D 2 0.584 1.682 7.138 1 27.77 ? C7 L41 501 B 1 
HETATM 8 O O8 L41 . . . D 2 1.671 0.216 8.592 1 31.22 ? O8 L41 501 B 1 
HETATM 9 C C9 L41 . . . D 2 -0.65 -0.059 11.298 1 26.95 ? C9 L41 501 B 1 
HETATM 10 C C10 L41 . . . D 2 -0.379 2.718 6.985 1 29.88 ? C10 L41 501 B 1 
HETATM 11 C C11 L41 . . . D 2 -2.687 3.916 10.491 1 28.5 ? C11 L41 501 B 1 
HETATM 12 C C12 L41 . . . D 2 1.337 1.209 5.936 1 30.3 ? C12 L41 501 B 1 
HETATM 13 C C13 L41 . . . D 2 -0.692 -0.181 12.831 1 31.31 ? C13 L41 501 B 1 
HETATM 14 C C14 L41 . . . D 2 -3.274 4.03 11.915 1 26.27 ? C14 L41 501 B 1 
HETATM 15 C C15 L41 . . . D 2 1.089 1.856 4.537 1 28.62 ? C15 L41 501 B 1 
HETATM 16 O O16 L41 . . . D 2 2.19 0.338 5.973 1 32.83 ? O16 L41 501 B 1 
HETATM 17 C C17 L41 . . . D 2 -3.762 2.667 12.335 1 23.47 ? C17 L41 501 B 1 
HETATM 18 O O18 L41 . . . D 2 -4.824 2.292 11.46 1 28.28 ? O18 L41 501 B 1 
HETATM 19 C C19 L41 . . . D 2 -5.249 0.928 11.379 1 31.43 ? C19 L41 501 B 1 
HETATM 20 C C20 L41 . . . D 2 -6.354 0.68 10.441 1 31.28 ? C20 L41 501 B 1 
HETATM 21 C C21 L41 . . . D 2 -4.653 -0.141 12.181 1 30.02 ? C21 L41 501 B 1 
HETATM 22 C C22 L41 . . . D 2 -6.829 -0.686 10.285 1 30.7 ? C22 L41 501 B 1 
HETATM 23 C C23 L41 . . . D 2 -5.114 -1.487 11.994 1 27.9 ? C23 L41 501 B 1 
HETATM 24 C C24 L41 . . . D 2 -6.178 -1.728 11.036 1 26.52 ? C24 L41 501 B 1 
HETATM 25 O O25 L41 . . . D 2 -6.707 -2.988 10.776 1 30.91 ? O25 L41 501 B 1 
HETATM 26 C C26 L41 . . . D 2 -6.042 -4.203 11.297 1 33.78 ? C26 L41 501 B 1 
HETATM 27 C C27 L41 . . . D 2 -6.432 -4.526 12.769 1 38 ? C27 L41 501 B 1 
HETATM 28 O O28 L41 . . . D 2 -5.734 -5.309 13.412 1 34.6 ? O28 L41 501 B 1 
HETATM 29 O O29 L41 . . . D 2 -7.447 -3.992 13.262 1 40.13 ? O29 L41 501 B 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#