data_3D5I # _model_server_result.job_id Hzb-6pLnkCQGLZk-x6Wc5Q _model_server_result.datetime_utc '2024-12-01 00:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":98}' # _entry.id 3D5I # _exptl.entry_id 3D5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.8 _cell.angle_gamma 90 _cell.entry_id 3D5I _cell.length_a 101.221 _cell.length_b 66.775 _cell.length_c 57.07 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,F,I 2 1 C,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 B SG CYS 9 B CYS 9 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 C SG CYS 9 C CYS 9 1_555 C SG CYS 97 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 309 n n S O2 SO4 doub 310 n n S O3 SO4 sing 311 n n S O4 SO4 sing 312 n n # _atom_sites.entry_id 3D5I _atom_sites.fract_transf_matrix[1][1] 0.009879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001884 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 98 98 SO4 SO4 . E 2 SO4 A 1 99 99 SO4 SO4 . F 3 SGP B 1 98 98 SGP SGP . G 2 SO4 C 1 98 98 SO4 SO4 . H 4 HOH A 1 100 6 HOH HOH . H 4 HOH A 2 101 7 HOH HOH . H 4 HOH A 3 102 8 HOH HOH . H 4 HOH A 4 103 13 HOH HOH . H 4 HOH A 5 104 15 HOH HOH . H 4 HOH A 6 105 16 HOH HOH . H 4 HOH A 7 106 20 HOH HOH . H 4 HOH A 8 107 22 HOH HOH . H 4 HOH A 9 108 26 HOH HOH . H 4 HOH A 10 109 27 HOH HOH . H 4 HOH A 11 110 28 HOH HOH . H 4 HOH A 12 111 32 HOH HOH . H 4 HOH A 13 112 36 HOH HOH . H 4 HOH A 14 113 39 HOH HOH . H 4 HOH A 15 114 41 HOH HOH . H 4 HOH A 16 115 42 HOH HOH . H 4 HOH A 17 116 46 HOH HOH . H 4 HOH A 18 117 49 HOH HOH . H 4 HOH A 19 118 52 HOH HOH . H 4 HOH A 20 119 57 HOH HOH . H 4 HOH A 21 120 59 HOH HOH . H 4 HOH A 22 121 60 HOH HOH . H 4 HOH A 23 122 61 HOH HOH . H 4 HOH A 24 123 63 HOH HOH . H 4 HOH A 25 124 70 HOH HOH . H 4 HOH A 26 125 72 HOH HOH . H 4 HOH A 27 126 76 HOH HOH . H 4 HOH A 28 127 77 HOH HOH . H 4 HOH A 29 128 80 HOH HOH . H 4 HOH A 30 129 81 HOH HOH . H 4 HOH A 31 130 83 HOH HOH . H 4 HOH A 32 131 84 HOH HOH . H 4 HOH A 33 132 86 HOH HOH . H 4 HOH A 34 133 88 HOH HOH . H 4 HOH A 35 134 93 HOH HOH . H 4 HOH A 36 135 94 HOH HOH . H 4 HOH A 37 136 95 HOH HOH . H 4 HOH A 38 137 97 HOH HOH . H 4 HOH A 39 138 99 HOH HOH . H 4 HOH A 40 139 100 HOH HOH . H 4 HOH A 41 140 101 HOH HOH . H 4 HOH A 42 141 102 HOH HOH . H 4 HOH A 43 142 103 HOH HOH . H 4 HOH A 44 143 107 HOH HOH . H 4 HOH A 45 144 110 HOH HOH . H 4 HOH A 46 145 112 HOH HOH . H 4 HOH A 47 146 114 HOH HOH . H 4 HOH A 48 147 118 HOH HOH . H 4 HOH A 49 148 119 HOH HOH . H 4 HOH A 50 149 121 HOH HOH . H 4 HOH A 51 150 122 HOH HOH . H 4 HOH A 52 151 125 HOH HOH . H 4 HOH A 53 152 129 HOH HOH . H 4 HOH A 54 153 139 HOH HOH . H 4 HOH A 55 154 140 HOH HOH . H 4 HOH A 56 155 142 HOH HOH . H 4 HOH A 57 156 144 HOH HOH . H 4 HOH A 58 157 145 HOH HOH . H 4 HOH A 59 158 146 HOH HOH . H 4 HOH A 60 159 147 HOH HOH . H 4 HOH A 61 160 148 HOH HOH . H 4 HOH A 62 161 150 HOH HOH . H 4 HOH A 63 162 152 HOH HOH . H 4 HOH A 64 163 154 HOH HOH . H 4 HOH A 65 164 162 HOH HOH . H 4 HOH A 66 165 164 HOH HOH . H 4 HOH A 67 166 166 HOH HOH . H 4 HOH A 68 167 172 HOH HOH . H 4 HOH A 69 168 179 HOH HOH . H 4 HOH A 70 169 182 HOH HOH . H 4 HOH A 71 170 192 HOH HOH . H 4 HOH A 72 171 193 HOH HOH . H 4 HOH A 73 172 23 HOH HOH . H 4 HOH A 74 173 25 HOH HOH . I 4 HOH B 1 114 40 HOH HOH . I 4 HOH B 2 115 113 HOH HOH . I 4 HOH B 3 116 3 HOH HOH . I 4 HOH B 4 117 5 HOH HOH . I 4 HOH B 5 118 9 HOH HOH . I 4 HOH B 6 119 11 HOH HOH . I 4 HOH B 7 120 12 HOH HOH . I 4 HOH B 8 121 14 HOH HOH . I 4 HOH B 9 122 17 HOH HOH . I 4 HOH B 10 123 18 HOH HOH . I 4 HOH B 11 124 24 HOH HOH . I 4 HOH B 12 125 30 HOH HOH . I 4 HOH B 13 126 31 HOH HOH . I 4 HOH B 14 127 33 HOH HOH . I 4 HOH B 15 128 38 HOH HOH . I 4 HOH B 16 129 43 HOH HOH . I 4 HOH B 17 130 44 HOH HOH . I 4 HOH B 18 131 47 HOH HOH . I 4 HOH B 19 132 50 HOH HOH . I 4 HOH B 20 133 51 HOH HOH . I 4 HOH B 21 134 54 HOH HOH . I 4 HOH B 22 135 66 HOH HOH . I 4 HOH B 23 136 67 HOH HOH . I 4 HOH B 24 137 68 HOH HOH . I 4 HOH B 25 138 87 HOH HOH . I 4 HOH B 26 139 98 HOH HOH . I 4 HOH B 27 140 105 HOH HOH . I 4 HOH B 28 141 106 HOH HOH . I 4 HOH B 29 142 108 HOH HOH . I 4 HOH B 30 143 116 HOH HOH . I 4 HOH B 31 144 120 HOH HOH . I 4 HOH B 32 145 126 HOH HOH . I 4 HOH B 33 146 127 HOH HOH . I 4 HOH B 34 147 132 HOH HOH . I 4 HOH B 35 148 134 HOH HOH . I 4 HOH B 36 149 136 HOH HOH . I 4 HOH B 37 150 137 HOH HOH . I 4 HOH B 38 151 138 HOH HOH . I 4 HOH B 39 152 143 HOH HOH . I 4 HOH B 40 153 149 HOH HOH . I 4 HOH B 41 154 151 HOH HOH . I 4 HOH B 42 155 159 HOH HOH . I 4 HOH B 43 156 160 HOH HOH . I 4 HOH B 44 157 161 HOH HOH . I 4 HOH B 45 158 169 HOH HOH . I 4 HOH B 46 159 170 HOH HOH . I 4 HOH B 47 160 188 HOH HOH . I 4 HOH B 48 161 194 HOH HOH . I 4 HOH B 49 162 195 HOH HOH . I 4 HOH B 50 163 196 HOH HOH . J 4 HOH C 1 99 10 HOH HOH . J 4 HOH C 2 100 19 HOH HOH . J 4 HOH C 3 101 21 HOH HOH . J 4 HOH C 4 104 29 HOH HOH . J 4 HOH C 5 105 34 HOH HOH . J 4 HOH C 6 106 35 HOH HOH . J 4 HOH C 7 107 37 HOH HOH . J 4 HOH C 8 108 45 HOH HOH . J 4 HOH C 9 109 48 HOH HOH . J 4 HOH C 10 110 53 HOH HOH . J 4 HOH C 11 111 55 HOH HOH . J 4 HOH C 12 112 56 HOH HOH . J 4 HOH C 13 113 58 HOH HOH . J 4 HOH C 14 114 62 HOH HOH . J 4 HOH C 15 115 64 HOH HOH . J 4 HOH C 16 116 65 HOH HOH . J 4 HOH C 17 117 69 HOH HOH . J 4 HOH C 18 118 71 HOH HOH . J 4 HOH C 19 119 74 HOH HOH . J 4 HOH C 20 120 75 HOH HOH . J 4 HOH C 21 121 78 HOH HOH . J 4 HOH C 22 122 79 HOH HOH . J 4 HOH C 23 123 82 HOH HOH . J 4 HOH C 24 124 85 HOH HOH . J 4 HOH C 25 125 90 HOH HOH . J 4 HOH C 26 126 91 HOH HOH . J 4 HOH C 27 127 92 HOH HOH . J 4 HOH C 28 128 96 HOH HOH . J 4 HOH C 29 129 104 HOH HOH . J 4 HOH C 30 130 109 HOH HOH . J 4 HOH C 31 131 111 HOH HOH . J 4 HOH C 32 132 115 HOH HOH . J 4 HOH C 33 133 117 HOH HOH . J 4 HOH C 34 134 123 HOH HOH . J 4 HOH C 35 135 124 HOH HOH . J 4 HOH C 36 136 128 HOH HOH . J 4 HOH C 37 137 130 HOH HOH . J 4 HOH C 38 138 133 HOH HOH . J 4 HOH C 39 139 135 HOH HOH . J 4 HOH C 40 140 156 HOH HOH . J 4 HOH C 41 141 163 HOH HOH . J 4 HOH C 42 142 175 HOH HOH . J 4 HOH C 43 143 176 HOH HOH . J 4 HOH C 44 144 184 HOH HOH . J 4 HOH C 45 145 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 67.656 -6.491 -12.949 1 35.52 ? S SO4 98 A 1 HETATM 2 O O1 SO4 . . . D 2 68.408 -6.287 -11.731 1 35.39 ? O1 SO4 98 A 1 HETATM 3 O O2 SO4 . . . D 2 68.201 -5.55 -13.914 1 35.94 ? O2 SO4 98 A 1 HETATM 4 O O3 SO4 . . . D 2 66.227 -6.211 -12.811 1 38.76 ? O3 SO4 98 A 1 HETATM 5 O O4 SO4 . . . D 2 67.801 -7.85 -13.386 1 34.79 ? O4 SO4 98 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #