data_3D5Q
#
_model_server_result.job_id            lhnhB1H5yDrLuAsAy2pcqQ 
_model_server_result.datetime_utc      '2024-12-22 01:28:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d5q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1}' 
#
_entry.id    3D5Q 
#
_exptl.entry_id    3D5Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.2 
_cell.angle_gamma         90 
_cell.entry_id            3D5Q 
_cell.length_a            56.675 
_cell.length_b            153.319 
_cell.length_c            73.601 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D5Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,E,F,G,H 2 1 
C,D,I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     3D5Q 
_atom_sites.fract_transf_matrix[1][1]    0.017644 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000678 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013597 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 1 1 NAP NAP . 
F 3 T30 A 1 293 290 T30 T30 . 
G 2 NAP B 1 2 2 NAP NAP . 
H 3 T30 B 1 1 1 T30 T30 . 
I 2 NAP C 1 3 3 NAP NAP . 
J 3 T30 C 1 1 1 T30 T30 . 
K 2 NAP D 1 4 4 NAP NAP . 
L 3 T30 D 1 1 1 T30 T30 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 10.052 -4.98 22.865 1 51.57 ? PA NAP 1 A 1 
HETATM 2 O O1A NAP . . . E 2 11.264 -4.284 23.366 1 52.36 ? O1A NAP 1 A 1 
HETATM 3 O O2A NAP . . . E 2 10.356 -6.063 21.9 1 48.57 ? O2A NAP 1 A 1 
HETATM 4 O O5B NAP . . . E 2 9.239 -5.548 24.122 1 49.41 ? O5B NAP 1 A 1 
HETATM 5 C C5B NAP . . . E 2 8.179 -6.45 23.91 1 49.32 ? C5B NAP 1 A 1 
HETATM 6 C C4B NAP . . . E 2 7.747 -6.919 25.296 1 49.4 ? C4B NAP 1 A 1 
HETATM 7 O O4B NAP . . . E 2 6.533 -7.673 25.288 1 47.11 ? O4B NAP 1 A 1 
HETATM 8 C C3B NAP . . . E 2 8.865 -7.809 25.815 1 48.25 ? C3B NAP 1 A 1 
HETATM 9 O O3B NAP . . . E 2 9.055 -7.576 27.186 1 46.51 ? O3B NAP 1 A 1 
HETATM 10 C C2B NAP . . . E 2 8.318 -9.193 25.587 1 48.33 ? C2B NAP 1 A 1 
HETATM 11 O O2B NAP . . . E 2 8.874 -10.085 26.524 1 50.41 ? O2B NAP 1 A 1 
HETATM 12 C C1B NAP . . . E 2 6.807 -8.98 25.733 1 46.99 ? C1B NAP 1 A 1 
HETATM 13 N N9A NAP . . . E 2 6.077 -10.005 24.983 1 44.74 ? N9A NAP 1 A 1 
HETATM 14 C C8A NAP . . . E 2 6.376 -10.501 23.745 1 43.88 ? C8A NAP 1 A 1 
HETATM 15 N N7A NAP . . . E 2 5.467 -11.461 23.438 1 43.18 ? N7A NAP 1 A 1 
HETATM 16 C C5A NAP . . . E 2 4.602 -11.597 24.47 1 43.08 ? C5A NAP 1 A 1 
HETATM 17 C C6A NAP . . . E 2 3.496 -12.416 24.695 1 42.95 ? C6A NAP 1 A 1 
HETATM 18 N N6A NAP . . . E 2 3.095 -13.304 23.782 1 42.5 ? N6A NAP 1 A 1 
HETATM 19 N N1A NAP . . . E 2 2.807 -12.32 25.891 1 42.77 ? N1A NAP 1 A 1 
HETATM 20 C C2A NAP . . . E 2 3.206 -11.412 26.838 1 42.5 ? C2A NAP 1 A 1 
HETATM 21 N N3A NAP . . . E 2 4.298 -10.602 26.613 1 44.16 ? N3A NAP 1 A 1 
HETATM 22 C C4A NAP . . . E 2 4.985 -10.691 25.452 1 44.63 ? C4A NAP 1 A 1 
HETATM 23 O O3 NAP . . . E 2 9.097 -3.882 22.199 1 48.35 ? O3 NAP 1 A 1 
HETATM 24 P PN NAP . . . E 2 9.219 -2.297 22.266 1 48 ? PN NAP 1 A 1 
HETATM 25 O O1N NAP . . . E 2 9.792 -1.938 23.584 1 49.41 ? O1N NAP 1 A 1 
HETATM 26 O O2N NAP . . . E 2 9.934 -1.81 21.062 1 50.28 ? O2N NAP 1 A 1 
HETATM 27 O O5D NAP . . . E 2 7.659 -1.844 22.15 1 47.15 ? O5D NAP 1 A 1 
HETATM 28 C C5D NAP . . . E 2 6.847 -1.632 23.274 1 45.74 ? C5D NAP 1 A 1 
HETATM 29 C C4D NAP . . . E 2 5.541 -0.96 22.887 1 46.92 ? C4D NAP 1 A 1 
HETATM 30 O O4D NAP . . . E 2 5.778 0.248 22.207 1 47.65 ? O4D NAP 1 A 1 
HETATM 31 C C3D NAP . . . E 2 4.695 -1.816 21.96 1 46.61 ? C3D NAP 1 A 1 
HETATM 32 O O3D NAP . . . E 2 3.344 -1.638 22.321 1 45.99 ? O3D NAP 1 A 1 
HETATM 33 C C2D NAP . . . E 2 4.893 -1.187 20.61 1 46.35 ? C2D NAP 1 A 1 
HETATM 34 O O2D NAP . . . E 2 3.753 -1.288 19.795 1 45.46 ? O2D NAP 1 A 1 
HETATM 35 C C1D NAP . . . E 2 5.099 0.253 20.969 1 47.56 ? C1D NAP 1 A 1 
HETATM 36 N N1N NAP . . . E 2 5.836 0.873 19.854 1 49.04 ? N1N NAP 1 A 1 
HETATM 37 C C2N NAP . . . E 2 7.178 0.695 19.707 1 48.24 ? C2N NAP 1 A 1 
HETATM 38 C C3N NAP . . . E 2 7.841 1.298 18.639 1 49.19 ? C3N NAP 1 A 1 
HETATM 39 C C7N NAP . . . E 2 9.323 1.111 18.472 1 49.3 ? C7N NAP 1 A 1 
HETATM 40 O O7N NAP . . . E 2 9.959 1.504 17.286 1 48.02 ? O7N NAP 1 A 1 
HETATM 41 N N7N NAP . . . E 2 10.041 0.564 19.454 1 50.95 ? N7N NAP 1 A 1 
HETATM 42 C C4N NAP . . . E 2 7.133 2.06 17.726 1 47.78 ? C4N NAP 1 A 1 
HETATM 43 C C5N NAP . . . E 2 5.772 2.232 17.896 1 48.57 ? C5N NAP 1 A 1 
HETATM 44 C C6N NAP . . . E 2 5.124 1.626 18.96 1 48.31 ? C6N NAP 1 A 1 
HETATM 45 P P2B NAP . . . E 2 8.897 -11.671 26.239 1 54.15 ? P2B NAP 1 A 1 
HETATM 46 O O1X NAP . . . E 2 10.064 -12.306 26.941 1 57.72 ? O1X NAP 1 A 1 
HETATM 47 O O2X NAP . . . E 2 7.623 -12.268 26.748 1 54.68 ? O2X NAP 1 A 1 
HETATM 48 O O3X NAP . . . E 2 9.008 -11.984 24.773 1 55.55 ? O3X NAP 1 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#