data_3D5X # _model_server_result.job_id m1PUayuiSrqMkoGQvwIZHg _model_server_result.datetime_utc '2024-11-26 04:19:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3D5X # _exptl.entry_id 3D5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,6BR,9AS,11R,11BR)-9A,11B-DIMETHYL-1-[(METHYLOXY)METHYL]-3,6,9-TRIOXO-1,6,6B,7,8,9,9A,10,11,11B-DECAHYDRO-3H-FURO[4,3,2-DE]INDENO[4,5-H][2]BENZOPYRAN-11-YL ACETATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D5X _cell.length_a 135.542 _cell.length_b 135.542 _cell.length_c 135.542 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C19 _struct_conn.ptnr1_label_comp_id KWT _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id KWT _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id NZ _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 57 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 68 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.433 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H24 O8' _chem_comp.formula_weight 428.432 _chem_comp.id KWT _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,6BR,9AS,11R,11BR)-9A,11B-DIMETHYL-1-[(METHYLOXY)METHYL]-3,6,9-TRIOXO-1,6,6B,7,8,9,9A,10,11,11B-DECAHYDRO-3H-FURO[4, 3,2-DE]INDENO[4,5-H][2]BENZOPYRAN-11-YL ACETATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[1S-(1A,6BA,9AB,11A,11BB)]-11-(ACETYLOXY)-1,6B,7,8,9A,10,11,11B-OCTAHYDRO-1-(METHOXYMETHLY) -9A,11B-DIMETHYL-3H-FURO[4,3,2-DE]INDENL[4,5-H]-2-BENZOPYRAN-3,6,9,TRIONE;WORTMANNIN' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 KWT sing 171 n n C1 C9 KWT sing 172 n n C1 C23 KWT sing 173 n n C1 HC1 KWT sing 174 n n O1 C2 KWT sing 175 n n C9 C4 KWT sing 176 n n C9 C8 KWT sing 177 n n C9 C10 KWT sing 178 n n C23 O8 KWT sing 179 n n C23 H231 KWT sing 180 n n C23 H232 KWT sing 181 n n C2 O2 KWT doub 182 n n C2 C3 KWT sing 183 n n C3 C4 KWT sing 184 n y C3 C19 KWT doub 185 n y C4 C5 KWT doub 186 n y C19 O5 KWT sing 187 n y C19 H19 KWT sing 188 n n C5 C6 KWT sing 189 n n C5 O5 KWT sing 190 n y C6 O3 KWT doub 191 n n C6 C7 KWT sing 192 n n C7 C8 KWT doub 193 n n C7 C15 KWT sing 194 n n O6 C11 KWT sing 195 n n O6 C21 KWT sing 196 n n C11 C8 KWT sing 197 n n C11 C12 KWT sing 198 n n C11 H11 KWT sing 199 n n C21 O7 KWT doub 200 n n C21 C22 KWT sing 201 n n C15 C13 KWT sing 202 n n C15 C16 KWT sing 203 n n C15 H15 KWT sing 204 n n C10 H101 KWT sing 205 n n C10 H102 KWT sing 206 n n C10 H103 KWT sing 207 n n C12 C13 KWT sing 208 n n C12 H121 KWT sing 209 n n C12 H122 KWT sing 210 n n C13 C14 KWT sing 211 n n C13 C18 KWT sing 212 n n C14 H141 KWT sing 213 n n C14 H142 KWT sing 214 n n C14 H143 KWT sing 215 n n C18 C17 KWT sing 216 n n C18 O4 KWT doub 217 n n C16 C17 KWT sing 218 n n C16 H161 KWT sing 219 n n C16 H162 KWT sing 220 n n C17 H171 KWT sing 221 n n C17 H172 KWT sing 222 n n C22 H221 KWT sing 223 n n C22 H222 KWT sing 224 n n C22 H223 KWT sing 225 n n O8 C24 KWT sing 226 n n C24 H241 KWT sing 227 n n C24 H242 KWT sing 228 n n C24 H243 KWT sing 229 n n # _atom_sites.entry_id 3D5X _atom_sites.fract_transf_matrix[1][1] 0.007378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id KWT _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id KWT _pdbx_nonpoly_scheme.auth_mon_id KWT _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KWT . . . B 2 76.384 47.82 19.922 1 90.85 ? C1 KWT 1 A 1 HETATM 2 O O1 KWT . . . B 2 76.128 49.218 20.179 1 90.88 ? O1 KWT 1 A 1 HETATM 3 C C9 KWT . . . B 2 77.379 47.245 20.948 1 90.64 ? C9 KWT 1 A 1 HETATM 4 C C23 KWT . . . B 2 75.065 47.042 19.892 1 90.91 ? C23 KWT 1 A 1 HETATM 5 C C2 KWT . . . B 2 76.457 49.674 21.533 1 90.66 ? C2 KWT 1 A 1 HETATM 6 O O2 KWT . . . B 2 76.895 50.793 21.719 1 91.79 ? O2 KWT 1 A 1 HETATM 7 C C3 KWT . . . B 2 76.255 48.733 22.665 1 90.45 ? C3 KWT 1 A 1 HETATM 8 C C4 KWT . . . B 2 76.739 47.466 22.309 1 90.55 ? C4 KWT 1 A 1 HETATM 9 C C19 KWT . . . B 2 75.683 48.917 23.919 1 89.65 ? C19 KWT 1 A 1 HETATM 10 C C5 KWT . . . B 2 76.585 46.401 23.343 1 90.54 ? C5 KWT 1 A 1 HETATM 11 C C6 KWT . . . B 2 77.063 45.03 23.061 1 90.4 ? C6 KWT 1 A 1 HETATM 12 O O5 KWT . . . B 2 76.028 46.521 24.601 1 90.68 ? O5 KWT 1 A 1 HETATM 13 O O3 KWT . . . B 2 76.926 44.151 23.941 1 90.43 ? O3 KWT 1 A 1 HETATM 14 C C7 KWT . . . B 2 77.692 44.747 21.736 1 90.39 ? C7 KWT 1 A 1 HETATM 15 O O6 KWT . . . B 2 77.585 45.489 18.246 1 91.07 ? O6 KWT 1 A 1 HETATM 16 C C11 KWT . . . B 2 78.497 45.478 19.355 1 90.52 ? C11 KWT 1 A 1 HETATM 17 C C21 KWT . . . B 2 78.179 45.998 17.009 1 91.08 ? C21 KWT 1 A 1 HETATM 18 C C8 KWT . . . B 2 77.824 45.811 20.675 1 90.52 ? C8 KWT 1 A 1 HETATM 19 C C15 KWT . . . B 2 78.193 43.396 21.365 1 90.47 ? C15 KWT 1 A 1 HETATM 20 C C10 KWT . . . B 2 78.683 48.043 20.909 1 90.38 ? C10 KWT 1 A 1 HETATM 21 C C12 KWT . . . B 2 79.315 44.165 19.325 1 90.72 ? C12 KWT 1 A 1 HETATM 22 C C13 KWT . . . B 2 79.551 43.549 20.701 1 90.67 ? C13 KWT 1 A 1 HETATM 23 C C14 KWT . . . B 2 80.552 44.364 21.519 1 90.83 ? C14 KWT 1 A 1 HETATM 24 C C18 KWT . . . B 2 79.999 42.113 20.723 1 90.62 ? C18 KWT 1 A 1 HETATM 25 C C16 KWT . . . B 2 78.336 42.302 22.427 1 90.39 ? C16 KWT 1 A 1 HETATM 26 C C17 KWT . . . B 2 79.318 41.306 21.806 1 90.42 ? C17 KWT 1 A 1 HETATM 27 O O4 KWT . . . B 2 80.827 41.642 19.958 1 90.52 ? O4 KWT 1 A 1 HETATM 28 O O7 KWT . . . B 2 78.913 45.263 16.364 1 90.64 ? O7 KWT 1 A 1 HETATM 29 C C22 KWT . . . B 2 77.871 47.394 16.55 1 91.16 ? C22 KWT 1 A 1 HETATM 30 O O8 KWT . . . B 2 74.187 47.578 18.905 1 91.31 ? O8 KWT 1 A 1 HETATM 31 C C24 KWT . . . B 2 72.829 47.227 19.167 1 90.99 ? C24 KWT 1 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #