data_3D62 # _model_server_result.job_id O3lI0u0ZcoqhNeH7fsBP_A _model_server_result.datetime_utc '2025-03-06 08:01:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":350}' # _entry.id 3D62 # _exptl.entry_id 3D62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl (2-oxopropyl)carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D62 _cell.length_a 106.668 _cell.length_b 45.16 _cell.length_c 53.967 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 106.668 45.16 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 143 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C16 _struct_conn.ptnr2_label_comp_id 959 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 959 _struct_conn.ptnr2_auth_seq_id 350 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.699 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H13 N O3' _chem_comp.formula_weight 207.226 _chem_comp.id 959 _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl (2-oxopropyl)carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C13 959 doub 1 n n C13 C16 959 sing 2 n n C13 C12 959 sing 3 n n C12 N10 959 sing 4 n n N10 C9 959 sing 5 n n C9 O11 959 doub 6 n n C9 O8 959 sing 7 n n O8 C7 959 sing 8 n n C7 C5 959 sing 9 n n C5 C6 959 doub 10 n y C5 C4 959 sing 11 n y C6 C1 959 sing 12 n y C1 C2 959 doub 13 n y C2 C3 959 sing 14 n y C3 C4 959 doub 15 n y C16 H16 959 sing 16 n n C16 H16A 959 sing 17 n n C16 H16B 959 sing 18 n n C12 H12 959 sing 19 n n C12 H12A 959 sing 20 n n N10 HN10 959 sing 21 n n C7 H7 959 sing 22 n n C7 H7A 959 sing 23 n n C6 H6 959 sing 24 n n C1 H1 959 sing 25 n n C2 H2 959 sing 26 n n C3 H3 959 sing 27 n n C4 H4 959 sing 28 n n # _atom_sites.entry_id 3D62 _atom_sites.fract_transf_matrix[1][1] 0.009375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 959 A 1 350 350 959 959 . C 3 HOH A 1 351 1 HOH HOH . C 3 HOH A 2 352 2 HOH HOH . C 3 HOH A 3 353 3 HOH HOH . C 3 HOH A 4 354 4 HOH HOH . C 3 HOH A 5 355 5 HOH HOH . C 3 HOH A 6 356 6 HOH HOH . C 3 HOH A 7 357 7 HOH HOH . C 3 HOH A 8 358 8 HOH HOH . C 3 HOH A 9 359 9 HOH HOH . C 3 HOH A 10 360 10 HOH HOH . C 3 HOH A 11 361 11 HOH HOH . C 3 HOH A 12 362 12 HOH HOH . C 3 HOH A 13 363 14 HOH HOH . C 3 HOH A 14 364 16 HOH HOH . C 3 HOH A 15 365 17 HOH HOH . C 3 HOH A 16 366 19 HOH HOH . C 3 HOH A 17 367 20 HOH HOH . C 3 HOH A 18 368 21 HOH HOH . C 3 HOH A 19 369 22 HOH HOH . C 3 HOH A 20 370 23 HOH HOH . C 3 HOH A 21 371 25 HOH HOH . C 3 HOH A 22 372 26 HOH HOH . C 3 HOH A 23 373 27 HOH HOH . C 3 HOH A 24 374 30 HOH HOH . C 3 HOH A 25 375 31 HOH HOH . C 3 HOH A 26 376 32 HOH HOH . C 3 HOH A 27 377 33 HOH HOH . C 3 HOH A 28 378 35 HOH HOH . C 3 HOH A 29 379 36 HOH HOH . C 3 HOH A 30 380 39 HOH HOH . C 3 HOH A 31 381 40 HOH HOH . C 3 HOH A 32 382 41 HOH HOH . C 3 HOH A 33 383 44 HOH HOH . C 3 HOH A 34 384 45 HOH HOH . C 3 HOH A 35 385 47 HOH HOH . C 3 HOH A 36 386 49 HOH HOH . C 3 HOH A 37 387 50 HOH HOH . C 3 HOH A 38 388 51 HOH HOH . C 3 HOH A 39 389 61 HOH HOH . C 3 HOH A 40 390 62 HOH HOH . C 3 HOH A 41 391 63 HOH HOH . C 3 HOH A 42 392 64 HOH HOH . C 3 HOH A 43 393 65 HOH HOH . C 3 HOH A 44 394 68 HOH HOH . C 3 HOH A 45 395 69 HOH HOH . C 3 HOH A 46 396 72 HOH HOH . C 3 HOH A 47 397 73 HOH HOH . C 3 HOH A 48 398 74 HOH HOH . C 3 HOH A 49 399 75 HOH HOH . C 3 HOH A 50 400 76 HOH HOH . C 3 HOH A 51 401 77 HOH HOH . C 3 HOH A 52 402 79 HOH HOH . C 3 HOH A 53 403 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O15 959 . . . B 2 63.158 41.908 42.412 1 48.07 ? O15 959 350 A 1 HETATM 2 C C13 959 . . . B 2 64.271 41.465 42.367 1 47.34 ? C13 959 350 A 1 HETATM 3 C C16 959 . . . B 2 64.387 40.04 41.741 1 44.95 ? C16 959 350 A 1 HETATM 4 C C12 959 . . . B 2 65.437 42.192 42.942 1 47.91 ? C12 959 350 A 1 HETATM 5 N N10 959 . . . B 2 66.404 42.321 41.698 1 49.35 ? N10 959 350 A 1 HETATM 6 C C9 959 . . . B 2 66.021 42.759 40.441 1 49.84 ? C9 959 350 A 1 HETATM 7 O O11 959 . . . B 2 64.842 43.154 40.145 1 50.28 ? O11 959 350 A 1 HETATM 8 O O8 959 . . . B 2 67.064 42.775 39.373 1 49.85 ? O8 959 350 A 1 HETATM 9 C C7 959 . . . B 2 68.296 43.527 39.783 1 49.77 ? C7 959 350 A 1 HETATM 10 C C5 959 . . . B 2 69.474 42.951 39.034 1 49.92 ? C5 959 350 A 1 HETATM 11 C C6 959 . . . B 2 69.922 43.567 37.866 1 50.32 ? C6 959 350 A 1 HETATM 12 C C1 959 . . . B 2 71.011 43.032 37.178 1 50.39 ? C1 959 350 A 1 HETATM 13 C C2 959 . . . B 2 71.644 41.886 37.66 1 50.2 ? C2 959 350 A 1 HETATM 14 C C3 959 . . . B 2 71.195 41.265 38.823 1 50.21 ? C3 959 350 A 1 HETATM 15 C C4 959 . . . B 2 70.107 41.8 39.512 1 50.21 ? C4 959 350 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 420 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #