data_3D6A
#
_model_server_result.job_id            zXY18QIFgRgZkSMLOfLcGA 
_model_server_result.datetime_utc      '2024-10-20 01:23:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d6a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3}' 
#
_entry.id    3D6A 
#
_exptl.entry_id    3D6A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3D6A 
_cell.length_a            78.205 
_cell.length_b            116.665 
_cell.length_c            121.471 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D6A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,N,O,P,Q,V,X 1 1 
B,D,K,L,M,R,S,T,U,W,Y 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
? 2 O N N 
? 2 R N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NH2 ARG 16 A ARG 365 1_555 I NA NA . A NA 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc2 A NE2 HIS 17 A HIS 366 1_555 J W W . A W 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc3 J W W . A W 624 1_555 V O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc4 J W W . A W 624 1_555 V O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc5 J W W . A W 624 1_555 V O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc6 J W W . A W 624 1_555 Y O HOH . D HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc7 V O HOH . A HOH 628 1_555 U W W . D W 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc8 L NA NA . B NA 1 1_555 W O HOH . B HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc9 M W W . B W 7 1_555 B NE2 HIS 17 B HIS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc10 M W W . B W 7 1_555 W O HOH . B HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc11 M W W . B W 7 1_555 W O HOH . B HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc12 M W W . B W 7 1_555 W O HOH . B HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc13 M W W . B W 7 1_555 W O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc14 P NA NA . C NA 3 1_555 X O HOH . C HOH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc15 P NA NA . C NA 3 1_555 C NH2 ARG 16 C ARG 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc16 N MG MG . C MG 6 1_555 X O HOH . C HOH 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc17 X O HOH . C HOH 11 1_555 Q W W . C W 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc18 Q W W . C W 12 1_555 X O HOH . C HOH 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc19 Q W W . C W 12 1_555 X O HOH . C HOH 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc20 Q W W . C W 12 1_555 X O HOH . C HOH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc21 Q W W . C W 12 1_555 C NE2 HIS 17 C HIS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc22 U W W . D W 17 1_555 D NE2 HIS 17 D HIS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc23 U W W . D W 17 1_555 Y O HOH . D HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc24 U W W . D W 17 1_555 Y O HOH . D HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc25 U W W . D W 17 1_555 Y O HOH . D HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc26 D NH2 ARG 16 D ARG 365 1_555 T NA NA . D NA 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3D6A 
_atom_sites.fract_transf_matrix[1][1]    0.012787 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008572 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008232 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 2 2 MG MG . 
F 2 MG A 1 3 3 MG MG . 
G 2 MG A 1 5 5 MG MG . 
H 2 MG A 1 7 7 MG MG . 
I 3 NA A 1 623 2 NA NA . 
J 4 W A 1 624 1 W WO4 . 
K 2 MG B 1 9 9 MG MG . 
L 3 NA B 1 1 1 NA NA . 
M 4 W B 1 7 2 W WO4 . 
N 2 MG C 1 6 6 MG MG . 
O 2 MG C 1 8 8 MG MG . 
P 3 NA C 1 3 3 NA NA . 
Q 4 W C 1 12 3 W WO4 . 
R 2 MG D 1 1 1 MG MG . 
S 2 MG D 1 4 4 MG MG . 
T 3 NA D 1 623 4 NA NA . 
U 4 W D 1 17 4 W WO4 . 
V 5 HOH A 1 625 1 HOH WO4 . 
V 5 HOH A 2 626 1 HOH WO4 . 
V 5 HOH A 3 627 1 HOH WO4 . 
V 5 HOH A 4 628 4 HOH WO4 . 
V 5 HOH A 5 629 3 HOH HOH . 
V 5 HOH A 6 630 5 HOH HOH . 
V 5 HOH A 7 631 6 HOH HOH . 
V 5 HOH A 8 632 7 HOH HOH . 
V 5 HOH A 9 633 8 HOH HOH . 
V 5 HOH A 10 634 9 HOH HOH . 
V 5 HOH A 11 635 11 HOH HOH . 
V 5 HOH A 12 636 12 HOH HOH . 
V 5 HOH A 13 637 13 HOH HOH . 
V 5 HOH A 14 638 15 HOH HOH . 
V 5 HOH A 15 639 17 HOH HOH . 
V 5 HOH A 16 640 19 HOH HOH . 
V 5 HOH A 17 641 20 HOH HOH . 
V 5 HOH A 18 642 21 HOH HOH . 
V 5 HOH A 19 643 22 HOH HOH . 
V 5 HOH A 20 644 26 HOH HOH . 
V 5 HOH A 21 645 29 HOH HOH . 
V 5 HOH A 22 646 35 HOH HOH . 
V 5 HOH A 23 647 36 HOH HOH . 
V 5 HOH A 24 648 46 HOH HOH . 
V 5 HOH A 25 649 48 HOH HOH . 
V 5 HOH A 26 650 50 HOH HOH . 
V 5 HOH A 27 651 53 HOH HOH . 
V 5 HOH A 28 652 54 HOH HOH . 
V 5 HOH A 29 653 63 HOH HOH . 
V 5 HOH A 30 654 64 HOH HOH . 
V 5 HOH A 31 655 66 HOH HOH . 
V 5 HOH A 32 656 70 HOH HOH . 
V 5 HOH A 33 657 72 HOH HOH . 
V 5 HOH A 34 658 77 HOH HOH . 
V 5 HOH A 35 659 78 HOH HOH . 
V 5 HOH A 36 660 79 HOH HOH . 
V 5 HOH A 37 661 80 HOH HOH . 
V 5 HOH A 38 662 81 HOH HOH . 
V 5 HOH A 39 663 82 HOH HOH . 
V 5 HOH A 40 664 84 HOH HOH . 
V 5 HOH A 41 665 89 HOH HOH . 
V 5 HOH A 42 666 98 HOH HOH . 
V 5 HOH A 43 667 100 HOH HOH . 
V 5 HOH A 44 668 105 HOH HOH . 
V 5 HOH A 45 669 108 HOH HOH . 
V 5 HOH A 46 670 111 HOH HOH . 
V 5 HOH A 47 671 113 HOH HOH . 
V 5 HOH A 48 672 118 HOH HOH . 
V 5 HOH A 49 673 121 HOH HOH . 
V 5 HOH A 50 674 123 HOH HOH . 
V 5 HOH A 51 675 127 HOH HOH . 
V 5 HOH A 52 676 131 HOH HOH . 
V 5 HOH A 53 677 136 HOH HOH . 
V 5 HOH A 54 678 137 HOH HOH . 
V 5 HOH A 55 679 140 HOH HOH . 
V 5 HOH A 56 680 142 HOH HOH . 
V 5 HOH A 57 681 144 HOH HOH . 
V 5 HOH A 58 682 146 HOH HOH . 
V 5 HOH A 59 683 147 HOH HOH . 
V 5 HOH A 60 684 157 HOH HOH . 
W 5 HOH B 1 623 2 HOH WO4 . 
W 5 HOH B 2 624 2 HOH WO4 . 
W 5 HOH B 3 625 2 HOH WO4 . 
W 5 HOH B 4 626 2 HOH WO4 . 
W 5 HOH B 5 627 14 HOH HOH . 
W 5 HOH B 6 628 24 HOH HOH . 
W 5 HOH B 7 629 32 HOH HOH . 
W 5 HOH B 8 630 33 HOH HOH . 
W 5 HOH B 9 631 41 HOH HOH . 
W 5 HOH B 10 632 42 HOH HOH . 
W 5 HOH B 11 633 43 HOH HOH . 
W 5 HOH B 12 634 44 HOH HOH . 
W 5 HOH B 13 635 56 HOH HOH . 
W 5 HOH B 14 636 59 HOH HOH . 
W 5 HOH B 15 637 60 HOH HOH . 
W 5 HOH B 16 638 67 HOH HOH . 
W 5 HOH B 17 639 68 HOH HOH . 
W 5 HOH B 18 640 75 HOH HOH . 
W 5 HOH B 19 641 76 HOH HOH . 
W 5 HOH B 20 642 92 HOH HOH . 
W 5 HOH B 21 643 94 HOH HOH . 
W 5 HOH B 22 644 95 HOH HOH . 
W 5 HOH B 23 645 101 HOH HOH . 
W 5 HOH B 24 646 102 HOH HOH . 
W 5 HOH B 25 647 103 HOH HOH . 
W 5 HOH B 26 648 109 HOH HOH . 
W 5 HOH B 27 649 112 HOH HOH . 
W 5 HOH B 28 650 116 HOH HOH . 
W 5 HOH B 29 651 122 HOH HOH . 
W 5 HOH B 30 652 138 HOH HOH . 
W 5 HOH B 31 653 143 HOH HOH . 
W 5 HOH B 32 654 145 HOH HOH . 
W 5 HOH B 33 655 149 HOH HOH . 
W 5 HOH B 34 656 151 HOH HOH . 
W 5 HOH B 35 657 156 HOH HOH . 
W 5 HOH B 36 658 158 HOH HOH . 
X 5 HOH C 1 1 1 HOH HOH . 
X 5 HOH C 2 4 4 HOH HOH . 
X 5 HOH C 3 11 3 HOH WO4 . 
X 5 HOH C 4 13 3 HOH WO4 . 
X 5 HOH C 5 14 3 HOH WO4 . 
X 5 HOH C 6 15 3 HOH WO4 . 
X 5 HOH C 7 18 18 HOH HOH . 
X 5 HOH C 8 23 23 HOH HOH . 
X 5 HOH C 9 30 30 HOH HOH . 
X 5 HOH C 10 34 34 HOH HOH . 
X 5 HOH C 11 37 37 HOH HOH . 
X 5 HOH C 12 39 39 HOH HOH . 
X 5 HOH C 13 45 45 HOH HOH . 
X 5 HOH C 14 47 47 HOH HOH . 
X 5 HOH C 15 51 51 HOH HOH . 
X 5 HOH C 16 52 52 HOH HOH . 
X 5 HOH C 17 55 55 HOH HOH . 
X 5 HOH C 18 62 62 HOH HOH . 
X 5 HOH C 19 69 69 HOH HOH . 
X 5 HOH C 20 71 71 HOH HOH . 
X 5 HOH C 21 83 83 HOH HOH . 
X 5 HOH C 22 87 87 HOH HOH . 
X 5 HOH C 23 91 91 HOH HOH . 
X 5 HOH C 24 93 93 HOH HOH . 
X 5 HOH C 25 97 97 HOH HOH . 
X 5 HOH C 26 99 99 HOH HOH . 
X 5 HOH C 27 104 104 HOH HOH . 
X 5 HOH C 28 119 119 HOH HOH . 
X 5 HOH C 29 120 120 HOH HOH . 
X 5 HOH C 30 126 126 HOH HOH . 
X 5 HOH C 31 130 130 HOH HOH . 
X 5 HOH C 32 134 134 HOH HOH . 
X 5 HOH C 33 141 141 HOH HOH . 
X 5 HOH C 34 148 148 HOH HOH . 
X 5 HOH C 35 150 150 HOH HOH . 
X 5 HOH C 36 152 152 HOH HOH . 
X 5 HOH C 37 154 154 HOH HOH . 
X 5 HOH C 38 155 155 HOH HOH . 
Y 5 HOH D 1 624 1 HOH WO4 . 
Y 5 HOH D 2 625 4 HOH WO4 . 
Y 5 HOH D 3 626 4 HOH WO4 . 
Y 5 HOH D 4 627 4 HOH WO4 . 
Y 5 HOH D 5 628 2 HOH HOH . 
Y 5 HOH D 6 629 10 HOH HOH . 
Y 5 HOH D 7 630 16 HOH HOH . 
Y 5 HOH D 8 631 25 HOH HOH . 
Y 5 HOH D 9 632 27 HOH HOH . 
Y 5 HOH D 10 633 28 HOH HOH . 
Y 5 HOH D 11 634 31 HOH HOH . 
Y 5 HOH D 12 635 38 HOH HOH . 
Y 5 HOH D 13 636 40 HOH HOH . 
Y 5 HOH D 14 637 49 HOH HOH . 
Y 5 HOH D 15 638 57 HOH HOH . 
Y 5 HOH D 16 639 58 HOH HOH . 
Y 5 HOH D 17 640 61 HOH HOH . 
Y 5 HOH D 18 641 65 HOH HOH . 
Y 5 HOH D 19 642 73 HOH HOH . 
Y 5 HOH D 20 643 74 HOH HOH . 
Y 5 HOH D 21 644 85 HOH HOH . 
Y 5 HOH D 22 645 86 HOH HOH . 
Y 5 HOH D 23 646 88 HOH HOH . 
Y 5 HOH D 24 647 90 HOH HOH . 
Y 5 HOH D 25 648 96 HOH HOH . 
Y 5 HOH D 26 649 106 HOH HOH . 
Y 5 HOH D 27 650 107 HOH HOH . 
Y 5 HOH D 28 651 110 HOH HOH . 
Y 5 HOH D 29 652 114 HOH HOH . 
Y 5 HOH D 30 653 115 HOH HOH . 
Y 5 HOH D 31 654 117 HOH HOH . 
Y 5 HOH D 32 655 124 HOH HOH . 
Y 5 HOH D 33 656 125 HOH HOH . 
Y 5 HOH D 34 657 128 HOH HOH . 
Y 5 HOH D 35 658 129 HOH HOH . 
Y 5 HOH D 36 659 132 HOH HOH . 
Y 5 HOH D 37 660 133 HOH HOH . 
Y 5 HOH D 38 661 135 HOH HOH . 
Y 5 HOH D 39 662 139 HOH HOH . 
Y 5 HOH D 40 663 153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -56.104 
_atom_site.Cartn_y               121.031 
_atom_site.Cartn_z               10.555 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           3 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#