data_3D6D # _model_server_result.job_id lZcYs8IVuD8_bwjsNdNfcw _model_server_result.datetime_utc '2024-11-22 16:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3D6D # _exptl.entry_id 3D6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(biphenyl-4-yloxy)-3-phenylpropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.49 _cell.angle_gamma 90 _cell.entry_id 3D6D _cell.length_a 93.54 _cell.length_b 61.05 _cell.length_c 119.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D 2 1 B,E 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.77 30.525 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H18 O3' _chem_comp.formula_weight 318.366 _chem_comp.id LRG _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(biphenyl-4-yloxy)-3-phenylpropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CAF LRG doub 194 n y CAC CAE LRG sing 195 n y CAF CAJ LRG sing 196 n y CAE CAI LRG doub 197 n y CAJ CAT LRG doub 198 n y CAI CAT LRG sing 199 n y CAT CAQ LRG sing 200 n n CAG CAD LRG doub 201 n y CAG CAK LRG sing 202 n y CAD CAH LRG sing 203 n y CAO CAM LRG doub 204 n y CAO CAW LRG sing 205 n y CAK CAV LRG doub 206 n y CAM CAU LRG sing 207 n y CAH CAL LRG doub 208 n y CAV CAL LRG sing 209 n y CAV CAW LRG sing 210 n y OAR CAU LRG sing 211 n n OAR CAX LRG sing 212 n n CAW CAP LRG doub 213 n y CAU CAN LRG doub 214 n y CAP CAN LRG sing 215 n y CAQ CAX LRG sing 216 n n CAX CAS LRG sing 217 n n CAS OAA LRG doub 218 n n CAS OAB LRG sing 219 n n CAI HAI LRG sing 220 n n CAE HAE LRG sing 221 n n CAC HAC LRG sing 222 n n CAF HAF LRG sing 223 n n CAJ HAJ LRG sing 224 n n CAQ HAQ LRG sing 225 n n CAQ HAQA LRG sing 226 n n CAX HAX LRG sing 227 n n CAN HAN LRG sing 228 n n CAP HAP LRG sing 229 n n CAM HAM LRG sing 230 n n CAO HAO LRG sing 231 n n CAK HAK LRG sing 232 n n CAG HAG LRG sing 233 n n CAD HAD LRG sing 234 n n CAH HAH LRG sing 235 n n CAL HAL LRG sing 236 n n OAB HAB LRG sing 237 n n # _atom_sites.entry_id 3D6D _atom_sites.fract_transf_matrix[1][1] 0.010691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002565 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LRG A 1 1 1 LRG GXG . D 3 HOH A 1 477 1 HOH HOH . D 3 HOH A 2 478 3 HOH HOH . D 3 HOH A 3 479 5 HOH HOH . D 3 HOH A 4 480 7 HOH HOH . D 3 HOH A 5 481 8 HOH HOH . D 3 HOH A 6 482 9 HOH HOH . D 3 HOH A 7 483 11 HOH HOH . D 3 HOH A 8 484 14 HOH HOH . D 3 HOH A 9 485 15 HOH HOH . D 3 HOH A 10 486 17 HOH HOH . D 3 HOH A 11 487 18 HOH HOH . D 3 HOH A 12 488 19 HOH HOH . D 3 HOH A 13 489 21 HOH HOH . D 3 HOH A 14 490 22 HOH HOH . D 3 HOH A 15 491 23 HOH HOH . D 3 HOH A 16 492 25 HOH HOH . D 3 HOH A 17 493 26 HOH HOH . D 3 HOH A 18 494 29 HOH HOH . D 3 HOH A 19 495 30 HOH HOH . D 3 HOH A 20 496 31 HOH HOH . D 3 HOH A 21 497 33 HOH HOH . D 3 HOH A 22 498 34 HOH HOH . D 3 HOH A 23 499 36 HOH HOH . D 3 HOH A 24 500 38 HOH HOH . D 3 HOH A 25 501 39 HOH HOH . D 3 HOH A 26 502 41 HOH HOH . D 3 HOH A 27 503 46 HOH HOH . D 3 HOH A 28 504 47 HOH HOH . D 3 HOH A 29 505 48 HOH HOH . D 3 HOH A 30 506 52 HOH HOH . D 3 HOH A 31 507 54 HOH HOH . D 3 HOH A 32 508 56 HOH HOH . D 3 HOH A 33 509 60 HOH HOH . D 3 HOH A 34 510 63 HOH HOH . D 3 HOH A 35 511 64 HOH HOH . D 3 HOH A 36 512 68 HOH HOH . D 3 HOH A 37 513 73 HOH HOH . D 3 HOH A 38 514 76 HOH HOH . D 3 HOH A 39 515 78 HOH HOH . D 3 HOH A 40 516 81 HOH HOH . D 3 HOH A 41 517 83 HOH HOH . D 3 HOH A 42 518 86 HOH HOH . D 3 HOH A 43 519 87 HOH HOH . D 3 HOH A 44 520 89 HOH HOH . D 3 HOH A 45 521 90 HOH HOH . D 3 HOH A 46 522 91 HOH HOH . D 3 HOH A 47 523 92 HOH HOH . D 3 HOH A 48 525 95 HOH HOH . D 3 HOH A 49 526 97 HOH HOH . D 3 HOH A 50 527 100 HOH HOH . D 3 HOH A 51 528 101 HOH HOH . D 3 HOH A 52 529 102 HOH HOH . D 3 HOH A 53 530 103 HOH HOH . D 3 HOH A 54 531 106 HOH HOH . D 3 HOH A 55 532 108 HOH HOH . D 3 HOH A 56 533 109 HOH HOH . D 3 HOH A 57 534 114 HOH HOH . D 3 HOH A 58 535 117 HOH HOH . D 3 HOH A 59 536 119 HOH HOH . D 3 HOH A 60 537 120 HOH HOH . D 3 HOH A 61 538 122 HOH HOH . D 3 HOH A 62 539 126 HOH HOH . D 3 HOH A 63 540 127 HOH HOH . D 3 HOH A 64 541 128 HOH HOH . D 3 HOH A 65 542 130 HOH HOH . D 3 HOH A 66 543 131 HOH HOH . D 3 HOH A 67 544 132 HOH HOH . D 3 HOH A 68 545 134 HOH HOH . E 3 HOH B 1 2 2 HOH HOH . E 3 HOH B 2 4 4 HOH HOH . E 3 HOH B 3 6 6 HOH HOH . E 3 HOH B 4 10 10 HOH HOH . E 3 HOH B 5 12 12 HOH HOH . E 3 HOH B 6 13 13 HOH HOH . E 3 HOH B 7 16 16 HOH HOH . E 3 HOH B 8 20 20 HOH HOH . E 3 HOH B 9 24 24 HOH HOH . E 3 HOH B 10 27 27 HOH HOH . E 3 HOH B 11 28 28 HOH HOH . E 3 HOH B 12 32 32 HOH HOH . E 3 HOH B 13 35 35 HOH HOH . E 3 HOH B 14 37 37 HOH HOH . E 3 HOH B 15 40 40 HOH HOH . E 3 HOH B 16 42 42 HOH HOH . E 3 HOH B 17 43 43 HOH HOH . E 3 HOH B 18 44 44 HOH HOH . E 3 HOH B 19 45 45 HOH HOH . E 3 HOH B 20 49 49 HOH HOH . E 3 HOH B 21 50 50 HOH HOH . E 3 HOH B 22 51 51 HOH HOH . E 3 HOH B 23 53 53 HOH HOH . E 3 HOH B 24 55 55 HOH HOH . E 3 HOH B 25 57 57 HOH HOH . E 3 HOH B 26 58 58 HOH HOH . E 3 HOH B 27 59 59 HOH HOH . E 3 HOH B 28 61 61 HOH HOH . E 3 HOH B 29 62 62 HOH HOH . E 3 HOH B 30 65 65 HOH HOH . E 3 HOH B 31 66 66 HOH HOH . E 3 HOH B 32 67 67 HOH HOH . E 3 HOH B 33 69 69 HOH HOH . E 3 HOH B 34 70 70 HOH HOH . E 3 HOH B 35 71 71 HOH HOH . E 3 HOH B 36 72 72 HOH HOH . E 3 HOH B 37 74 74 HOH HOH . E 3 HOH B 38 75 75 HOH HOH . E 3 HOH B 39 77 77 HOH HOH . E 3 HOH B 40 79 79 HOH HOH . E 3 HOH B 41 80 80 HOH HOH . E 3 HOH B 42 82 82 HOH HOH . E 3 HOH B 43 84 84 HOH HOH . E 3 HOH B 44 85 85 HOH HOH . E 3 HOH B 45 88 88 HOH HOH . E 3 HOH B 46 94 94 HOH HOH . E 3 HOH B 47 96 96 HOH HOH . E 3 HOH B 48 98 98 HOH HOH . E 3 HOH B 49 99 99 HOH HOH . E 3 HOH B 50 104 104 HOH HOH . E 3 HOH B 51 105 105 HOH HOH . E 3 HOH B 52 107 107 HOH HOH . E 3 HOH B 53 110 110 HOH HOH . E 3 HOH B 54 111 111 HOH HOH . E 3 HOH B 55 112 112 HOH HOH . E 3 HOH B 56 113 113 HOH HOH . E 3 HOH B 57 115 115 HOH HOH . E 3 HOH B 58 116 116 HOH HOH . E 3 HOH B 59 118 118 HOH HOH . E 3 HOH B 60 121 121 HOH HOH . E 3 HOH B 61 123 123 HOH HOH . E 3 HOH B 62 124 124 HOH HOH . E 3 HOH B 63 125 125 HOH HOH . E 3 HOH B 64 129 129 HOH HOH . E 3 HOH B 65 133 133 HOH HOH . E 3 HOH B 66 524 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI LRG . . . C 2 15.392 66.715 9.857 1 79.56 ? CAI LRG 1 A 1 HETATM 2 C CAE LRG . . . C 2 15.62 67.953 9.267 1 78.56 ? CAE LRG 1 A 1 HETATM 3 C CAC LRG . . . C 2 16.746 68.15 8.476 1 78.06 ? CAC LRG 1 A 1 HETATM 4 C CAF LRG . . . C 2 17.643 67.107 8.275 1 78.63 ? CAF LRG 1 A 1 HETATM 5 C CAJ LRG . . . C 2 17.415 65.869 8.864 1 79.8 ? CAJ LRG 1 A 1 HETATM 6 C CAT LRG . . . C 2 16.288 65.672 9.655 1 80.41 ? CAT LRG 1 A 1 HETATM 7 C CAQ LRG . . . C 2 16.043 64.308 10.305 1 82.6 ? CAQ LRG 1 A 1 HETATM 8 C CAX LRG . . . C 2 15.081 63.44 9.488 1 84.71 ? CAX LRG 1 A 1 HETATM 9 C CAS LRG . . . C 2 13.639 63.938 9.619 1 85.28 ? CAS LRG 1 A 1 HETATM 10 O OAB LRG . . . C 2 12.837 63.229 10.264 1 85.15 ? OAB LRG 1 A 1 HETATM 11 O OAA LRG . . . C 2 13.332 65.018 9.068 1 85.11 ? OAA LRG 1 A 1 HETATM 12 O OAR LRG . . . C 2 15.102 62.07 9.921 1 85.71 ? OAR LRG 1 A 1 HETATM 13 C CAU LRG . . . C 2 15.791 61.892 11.081 1 85.89 ? CAU LRG 1 A 1 HETATM 14 C CAN LRG . . . C 2 17.14 61.562 11.036 1 85.61 ? CAN LRG 1 A 1 HETATM 15 C CAP LRG . . . C 2 17.845 61.358 12.217 1 86.82 ? CAP LRG 1 A 1 HETATM 16 C CAM LRG . . . C 2 15.146 62.017 12.307 1 86.67 ? CAM LRG 1 A 1 HETATM 17 C CAO LRG . . . C 2 15.852 61.811 13.488 1 87.26 ? CAO LRG 1 A 1 HETATM 18 C CAW LRG . . . C 2 17.202 61.481 13.444 1 87.06 ? CAW LRG 1 A 1 HETATM 19 C CAV LRG . . . C 2 17.91 61.267 14.621 1 86.62 ? CAV LRG 1 A 1 HETATM 20 C CAK LRG . . . C 2 17.271 61.399 15.849 1 85.93 ? CAK LRG 1 A 1 HETATM 21 C CAG LRG . . . C 2 17.979 61.195 17.028 1 86.93 ? CAG LRG 1 A 1 HETATM 22 C CAD LRG . . . C 2 19.328 60.86 16.982 1 87.03 ? CAD LRG 1 A 1 HETATM 23 C CAH LRG . . . C 2 19.968 60.727 15.755 1 87.05 ? CAH LRG 1 A 1 HETATM 24 C CAL LRG . . . C 2 19.259 60.93 14.577 1 87.09 ? CAL LRG 1 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #