data_3D6W # _model_server_result.job_id rHhtt5kSQJ6dWWAJ71BHxg _model_server_result.datetime_utc '2024-12-21 12:56:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 3D6W # _exptl.entry_id 3D6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D6W _cell.length_a 88.784 _cell.length_b 88.784 _cell.length_c 74.425 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1,2 B,F,G,I 1 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 88.784 74.425 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 88.784 0 4 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 74.425 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 21 A VAL 126 1_555 A N MSE 22 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 22 A MSE 127 1_555 A N TYR 23 A TYR 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C SER 86 A SER 191 1_555 A N MSE 87 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 87 A MSE 192 1_555 A N ASP 88 A ASP 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 B C VAL 21 B VAL 126 1_555 B N MSE 22 B MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 B C MSE 22 B MSE 127 1_555 B N TYR 23 B TYR 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 B C SER 86 B SER 191 1_555 B N MSE 87 B MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 B C MSE 87 B MSE 192 1_555 B N ASP 88 B ASP 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 I O HOH . B HOH 23 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc2 I O HOH . B HOH 73 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 92 n n C O2 FMT sing 93 n n C H FMT sing 94 n n O2 HO2 FMT sing 95 n n # _atom_sites.entry_id 3D6W _atom_sites.fract_transf_matrix[1][1] 0.011263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 301 MG MG . D 3 EDO A 1 303 303 EDO EDO . E 4 FMT A 1 304 304 FMT FMT . F 2 MG B 1 302 302 MG MG . G 4 FMT B 1 305 305 FMT FMT . H 5 HOH A 1 1 1 HOH HOH . H 5 HOH A 2 3 3 HOH HOH . H 5 HOH A 3 6 6 HOH HOH . H 5 HOH A 4 7 7 HOH HOH . H 5 HOH A 5 8 8 HOH HOH . H 5 HOH A 6 9 9 HOH HOH . H 5 HOH A 7 10 10 HOH HOH . H 5 HOH A 8 11 11 HOH HOH . H 5 HOH A 9 14 14 HOH HOH . H 5 HOH A 10 16 16 HOH HOH . H 5 HOH A 11 17 17 HOH HOH . H 5 HOH A 12 19 19 HOH HOH . H 5 HOH A 13 20 20 HOH HOH . H 5 HOH A 14 21 21 HOH HOH . H 5 HOH A 15 22 22 HOH HOH . H 5 HOH A 16 24 24 HOH HOH . H 5 HOH A 17 25 25 HOH HOH . H 5 HOH A 18 27 27 HOH HOH . H 5 HOH A 19 30 30 HOH HOH . H 5 HOH A 20 31 31 HOH HOH . H 5 HOH A 21 38 38 HOH HOH . H 5 HOH A 22 39 39 HOH HOH . H 5 HOH A 23 40 40 HOH HOH . H 5 HOH A 24 42 42 HOH HOH . H 5 HOH A 25 44 44 HOH HOH . H 5 HOH A 26 45 45 HOH HOH . H 5 HOH A 27 46 46 HOH HOH . H 5 HOH A 28 47 47 HOH HOH . H 5 HOH A 29 49 49 HOH HOH . H 5 HOH A 30 50 50 HOH HOH . H 5 HOH A 31 51 51 HOH HOH . H 5 HOH A 32 57 57 HOH HOH . H 5 HOH A 33 59 59 HOH HOH . H 5 HOH A 34 60 60 HOH HOH . H 5 HOH A 35 62 62 HOH HOH . H 5 HOH A 36 64 64 HOH HOH . H 5 HOH A 37 65 65 HOH HOH . H 5 HOH A 38 69 69 HOH HOH . H 5 HOH A 39 70 70 HOH HOH . H 5 HOH A 40 71 71 HOH HOH . H 5 HOH A 41 74 74 HOH HOH . H 5 HOH A 42 75 75 HOH HOH . I 5 HOH B 1 2 2 HOH HOH . I 5 HOH B 2 4 4 HOH HOH . I 5 HOH B 3 5 5 HOH HOH . I 5 HOH B 4 12 12 HOH HOH . I 5 HOH B 5 13 13 HOH HOH . I 5 HOH B 6 15 15 HOH HOH . I 5 HOH B 7 18 18 HOH HOH . I 5 HOH B 8 23 23 HOH HOH . I 5 HOH B 9 26 26 HOH HOH . I 5 HOH B 10 28 28 HOH HOH . I 5 HOH B 11 29 29 HOH HOH . I 5 HOH B 12 32 32 HOH HOH . I 5 HOH B 13 33 33 HOH HOH . I 5 HOH B 14 34 34 HOH HOH . I 5 HOH B 15 35 35 HOH HOH . I 5 HOH B 16 36 36 HOH HOH . I 5 HOH B 17 37 37 HOH HOH . I 5 HOH B 18 41 41 HOH HOH . I 5 HOH B 19 43 43 HOH HOH . I 5 HOH B 20 48 48 HOH HOH . I 5 HOH B 21 52 52 HOH HOH . I 5 HOH B 22 53 53 HOH HOH . I 5 HOH B 23 54 54 HOH HOH . I 5 HOH B 24 55 55 HOH HOH . I 5 HOH B 25 56 56 HOH HOH . I 5 HOH B 26 58 58 HOH HOH . I 5 HOH B 27 61 61 HOH HOH . I 5 HOH B 28 63 63 HOH HOH . I 5 HOH B 29 66 66 HOH HOH . I 5 HOH B 30 67 67 HOH HOH . I 5 HOH B 31 68 68 HOH HOH . I 5 HOH B 32 72 72 HOH HOH . I 5 HOH B 33 73 73 HOH HOH . I 5 HOH B 34 76 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . E 4 -7.38 18.592 16.071 1 46.32 ? C FMT 304 A 1 HETATM 2 O O1 FMT . . . E 4 -7.468 17.353 16.243 1 47.22 ? O1 FMT 304 A 1 HETATM 3 O O2 FMT . . . E 4 -7.724 19.371 16.985 1 45.29 ? O2 FMT 304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #