data_3D71 # _model_server_result.job_id PWKKBQvJEH_bv39Hrt_wVg _model_server_result.datetime_utc '2024-11-26 10:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 3D71 # _exptl.entry_id 3D71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D71 _cell.length_a 105.48 _cell.length_b 105.48 _cell.length_c 147.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 105.48 73.665 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DG-DT MISPAIR' hydrog1 A O6 DG 2 M DG -12 1_555 A N3 DT 23 M DT 11 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 2 M DG -12 1_555 A N3 DC 24 M DC 12 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 2 M DG -12 1_555 A O2 DC 24 M DC 12 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 2 M DG -12 1_555 A N4 DC 24 M DC 12 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog5 A N1 DA 3 M DA -11 1_555 A N3 DT 23 M DT 11 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 4 M DC -10 1_555 A N1 DG 22 M DG 10 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 4 M DC -10 1_555 A O6 DG 22 M DG 10 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 4 M DC -10 1_555 A N2 DG 22 M DG 10 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 5 M DC -9 1_555 A N1 DG 21 M DG 9 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 5 M DC -9 1_555 A O6 DG 21 M DG 9 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 5 M DC -9 1_555 A N2 DG 21 M DG 9 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 6 M DC -8 1_555 A N1 DG 20 M DG 8 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 6 M DC -8 1_555 A O6 DG 20 M DG 8 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 6 M DC -8 1_555 A N2 DG 20 M DG 8 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 7 M DT -7 1_555 A N1 DA 19 M DA 7 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 7 M DT -7 1_555 A N6 DA 19 M DA 7 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DC 8 M DC -6 1_555 A N1 DG 18 M DG 6 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 DC 8 M DC -6 1_555 A O6 DG 18 M DG 6 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 DC 8 M DC -6 1_555 A N2 DG 18 M DG 6 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DC 9 M DC -5 1_555 A N1 DG 17 M DG 5 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N4 DC 9 M DC -5 1_555 A O6 DG 17 M DG 5 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O2 DC 9 M DC -5 1_555 A N2 DG 17 M DG 5 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 10 M DC -4 1_555 A N1 DG 16 M DG 4 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 10 M DC -4 1_555 A O6 DG 16 M DG 4 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 10 M DC -4 1_555 A N2 DG 16 M DG 4 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DC 11 M DC -3 1_555 A N1 DG 15 M DG 3 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N4 DC 11 M DC -3 1_555 A O6 DG 15 M DG 3 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O2 DC 11 M DC -3 1_555 A N2 DG 15 M DG 3 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N3 DT 12 M DT -2 1_555 A N1 DA 14 M DA 2 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O4 DT 12 M DT -2 1_555 A N6 DA 14 M DA 2 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N1 DA 14 M DA 2 1_555 A N3 DT 12 M DT -2 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N6 DA 14 M DA 2 1_555 A O4 DT 12 M DT -2 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N1 DG 15 M DG 3 1_555 A N3 DC 11 M DC -3 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N2 DG 15 M DG 3 1_555 A O2 DC 11 M DC -3 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O6 DG 15 M DG 3 1_555 A N4 DC 11 M DC -3 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DG 16 M DG 4 1_555 A N3 DC 10 M DC -4 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N2 DG 16 M DG 4 1_555 A O2 DC 10 M DC -4 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O6 DG 16 M DG 4 1_555 A N4 DC 10 M DC -4 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N1 DG 17 M DG 5 1_555 A N3 DC 9 M DC -5 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N2 DG 17 M DG 5 1_555 A O2 DC 9 M DC -5 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A O6 DG 17 M DG 5 1_555 A N4 DC 9 M DC -5 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N1 DG 18 M DG 6 1_555 A N3 DC 8 M DC -6 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N2 DG 18 M DG 6 1_555 A O2 DC 8 M DC -6 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A O6 DG 18 M DG 6 1_555 A N4 DC 8 M DC -6 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N1 DA 19 M DA 7 1_555 A N3 DT 7 M DT -7 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N6 DA 19 M DA 7 1_555 A O4 DT 7 M DT -7 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N1 DG 20 M DG 8 1_555 A N3 DC 6 M DC -8 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A N2 DG 20 M DG 8 1_555 A O2 DC 6 M DC -8 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 A O6 DG 20 M DG 8 1_555 A N4 DC 6 M DC -8 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 A N1 DG 21 M DG 9 1_555 A N3 DC 5 M DC -9 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 A N2 DG 21 M DG 9 1_555 A O2 DC 5 M DC -9 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog52 A O6 DG 21 M DG 9 1_555 A N4 DC 5 M DC -9 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog53 A N1 DG 22 M DG 10 1_555 A N3 DC 4 M DC -10 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog54 A N2 DG 22 M DG 10 1_555 A O2 DC 4 M DC -10 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog55 A O6 DG 22 M DG 10 1_555 A N4 DC 4 M DC -10 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DG MISPAIR' hydrog56 A N3 DT 23 M DT 11 1_555 A O6 DG 2 M DG -12 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog57 A N3 DT 23 M DT 11 1_555 A N1 DA 3 M DA -11 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog58 A N3 DC 24 M DC 12 1_555 A N1 DG 2 M DG -12 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog59 A N4 DC 24 M DC 12 1_555 A O6 DG 2 M DG -12 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog60 A O2 DC 24 M DC 12 1_555 A N2 DG 2 M DG -12 6_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 421 n n C1 O1 PGO sing 422 n n C1 H11 PGO sing 423 n n C1 H12 PGO sing 424 n n C2 C3 PGO sing 425 n n C2 O2 PGO sing 426 n n C2 H2 PGO sing 427 n n C3 H31 PGO sing 428 n n C3 H32 PGO sing 429 n n C3 H33 PGO sing 430 n n O1 HO1 PGO sing 431 n n O2 HO2 PGO sing 432 n n # _atom_sites.entry_id 3D71 _atom_sites.fract_transf_matrix[1][1] 0.00948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 4 FLC A 1 756 756 FLC FLC . E 5 PGO A 1 600 600 PGO PGO . F 5 PGO A 1 602 602 PGO PGO . G 5 PGO A 1 604 604 PGO PGO . H 6 ETF A 1 901 901 ETF ETF . I 7 IMD A 1 302 302 IMD IMD . J 7 IMD A 1 303 303 IMD IMD . K 7 IMD A 1 304 304 IMD IMD . L 7 IMD A 1 305 305 IMD IMD . M 7 IMD A 1 306 306 IMD IMD . N 8 HOH M 1 21 21 HOH HOH . N 8 HOH M 2 33 33 HOH HOH . N 8 HOH M 3 35 35 HOH HOH . O 8 HOH A 1 902 1 HOH HOH . O 8 HOH A 2 903 2 HOH HOH . O 8 HOH A 3 904 3 HOH HOH . O 8 HOH A 4 905 4 HOH HOH . O 8 HOH A 5 906 5 HOH HOH . O 8 HOH A 6 907 6 HOH HOH . O 8 HOH A 7 908 7 HOH HOH . O 8 HOH A 8 909 8 HOH HOH . O 8 HOH A 9 910 9 HOH HOH . O 8 HOH A 10 911 10 HOH HOH . O 8 HOH A 11 912 11 HOH HOH . O 8 HOH A 12 913 12 HOH HOH . O 8 HOH A 13 914 13 HOH HOH . O 8 HOH A 14 915 14 HOH HOH . O 8 HOH A 15 916 15 HOH HOH . O 8 HOH A 16 917 16 HOH HOH . O 8 HOH A 17 918 17 HOH HOH . O 8 HOH A 18 919 18 HOH HOH . O 8 HOH A 19 920 19 HOH HOH . O 8 HOH A 20 921 20 HOH HOH . O 8 HOH A 21 922 22 HOH HOH . O 8 HOH A 22 923 23 HOH HOH . O 8 HOH A 23 924 24 HOH HOH . O 8 HOH A 24 925 25 HOH HOH . O 8 HOH A 25 926 26 HOH HOH . O 8 HOH A 26 927 27 HOH HOH . O 8 HOH A 27 928 28 HOH HOH . O 8 HOH A 28 929 29 HOH HOH . O 8 HOH A 29 930 30 HOH HOH . O 8 HOH A 30 931 31 HOH HOH . O 8 HOH A 31 932 32 HOH HOH . O 8 HOH A 32 933 34 HOH HOH . O 8 HOH A 33 934 36 HOH HOH . O 8 HOH A 34 935 37 HOH HOH . O 8 HOH A 35 936 38 HOH HOH . O 8 HOH A 36 937 39 HOH HOH . O 8 HOH A 37 938 40 HOH HOH . O 8 HOH A 38 939 41 HOH HOH . O 8 HOH A 39 940 42 HOH HOH . O 8 HOH A 40 941 43 HOH HOH . O 8 HOH A 41 942 44 HOH HOH . O 8 HOH A 42 943 45 HOH HOH . O 8 HOH A 43 944 46 HOH HOH . O 8 HOH A 44 945 47 HOH HOH . O 8 HOH A 45 946 48 HOH HOH . O 8 HOH A 46 947 49 HOH HOH . O 8 HOH A 47 948 50 HOH HOH . O 8 HOH A 48 949 51 HOH HOH . O 8 HOH A 49 950 52 HOH HOH . O 8 HOH A 50 951 53 HOH HOH . O 8 HOH A 51 952 54 HOH HOH . O 8 HOH A 52 953 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . E 5 82.997 37.587 51.341 1 88.58 ? C1 PGO 600 A 1 HETATM 2 C C2 PGO . . . E 5 83.687 38.039 50.084 1 88.37 ? C2 PGO 600 A 1 HETATM 3 C C3 PGO . . . E 5 82.957 38.123 48.787 1 88.59 ? C3 PGO 600 A 1 HETATM 4 O O1 PGO . . . E 5 83.758 36.574 52 1 86.26 ? O1 PGO 600 A 1 HETATM 5 O O2 PGO . . . E 5 84.932 37.371 49.821 1 85.36 ? O2 PGO 600 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #