data_3D77 # _model_server_result.job_id kA2kIKfuQU-T3w5ea6vrmw _model_server_result.datetime_utc '2025-03-26 17:09:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":123}' # _entry.id 3D77 # _exptl.entry_id 3D77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D77 _cell.length_a 79.215 _cell.length_b 83.999 _cell.length_c 47.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 20 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 47 A CYS 47 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 A SG CYS 89 A CYS 89 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OE1 GLU 42 A GLU 42 1_555 B NA NA . A NA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc2 A OG SER 44 A SER 44 1_555 B NA NA . A NA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3D77 _atom_sites.fract_transf_matrix[1][1] 0.012624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 120 1 NA NA . C 3 NBB A 1 121 1 NBB NBB . D 4 EDO A 1 122 1 EDO EDO . E 4 EDO A 1 123 2 EDO EDO . F 4 EDO A 1 124 3 EDO EDO . G 4 EDO A 1 125 4 EDO EDO . H 4 EDO A 1 126 5 EDO EDO . I 4 EDO A 1 127 6 EDO EDO . J 5 HOH A 1 128 2 HOH HOH . J 5 HOH A 2 129 3 HOH HOH . J 5 HOH A 3 130 4 HOH HOH . J 5 HOH A 4 131 5 HOH HOH . J 5 HOH A 5 132 6 HOH HOH . J 5 HOH A 6 133 7 HOH HOH . J 5 HOH A 7 134 8 HOH HOH . J 5 HOH A 8 135 9 HOH HOH . J 5 HOH A 9 136 10 HOH HOH . J 5 HOH A 10 137 11 HOH HOH . J 5 HOH A 11 138 12 HOH HOH . J 5 HOH A 12 139 13 HOH HOH . J 5 HOH A 13 140 14 HOH HOH . J 5 HOH A 14 141 15 HOH HOH . J 5 HOH A 15 142 16 HOH HOH . J 5 HOH A 16 143 17 HOH HOH . J 5 HOH A 17 144 18 HOH HOH . J 5 HOH A 18 145 19 HOH HOH . J 5 HOH A 19 146 20 HOH HOH . J 5 HOH A 20 147 21 HOH HOH . J 5 HOH A 21 148 22 HOH HOH . J 5 HOH A 22 149 23 HOH HOH . J 5 HOH A 23 150 24 HOH HOH . J 5 HOH A 24 151 25 HOH HOH . J 5 HOH A 25 152 26 HOH HOH . J 5 HOH A 26 153 27 HOH HOH . J 5 HOH A 27 154 29 HOH HOH . J 5 HOH A 28 155 30 HOH HOH . J 5 HOH A 29 156 31 HOH HOH . J 5 HOH A 30 157 32 HOH HOH . J 5 HOH A 31 158 33 HOH HOH . J 5 HOH A 32 159 34 HOH HOH . J 5 HOH A 33 160 35 HOH HOH . J 5 HOH A 34 161 36 HOH HOH . J 5 HOH A 35 162 38 HOH HOH . J 5 HOH A 36 163 40 HOH HOH . J 5 HOH A 37 164 42 HOH HOH . J 5 HOH A 38 165 43 HOH HOH . J 5 HOH A 39 166 44 HOH HOH . J 5 HOH A 40 167 45 HOH HOH . J 5 HOH A 41 168 47 HOH HOH . J 5 HOH A 42 169 49 HOH HOH . J 5 HOH A 43 170 51 HOH HOH . J 5 HOH A 44 171 52 HOH HOH . J 5 HOH A 45 172 54 HOH HOH . J 5 HOH A 46 173 56 HOH HOH . J 5 HOH A 47 174 57 HOH HOH . J 5 HOH A 48 175 59 HOH HOH . J 5 HOH A 49 176 63 HOH HOH . J 5 HOH A 50 177 64 HOH HOH . J 5 HOH A 51 178 65 HOH HOH . J 5 HOH A 52 179 66 HOH HOH . J 5 HOH A 53 180 67 HOH HOH . J 5 HOH A 54 181 68 HOH HOH . J 5 HOH A 55 182 69 HOH HOH . J 5 HOH A 56 183 70 HOH HOH . J 5 HOH A 57 184 71 HOH HOH . J 5 HOH A 58 185 72 HOH HOH . J 5 HOH A 59 186 74 HOH HOH . J 5 HOH A 60 187 76 HOH HOH . J 5 HOH A 61 188 77 HOH HOH . J 5 HOH A 62 189 79 HOH HOH . J 5 HOH A 63 190 80 HOH HOH . J 5 HOH A 64 191 84 HOH HOH . J 5 HOH A 65 192 86 HOH HOH . J 5 HOH A 66 193 89 HOH HOH . J 5 HOH A 67 194 98 HOH HOH . J 5 HOH A 68 195 104 HOH HOH . J 5 HOH A 69 196 107 HOH HOH . J 5 HOH A 70 197 108 HOH HOH . J 5 HOH A 71 198 109 HOH HOH . J 5 HOH A 72 199 113 HOH HOH . J 5 HOH A 73 200 115 HOH HOH . J 5 HOH A 74 201 116 HOH HOH . J 5 HOH A 75 202 117 HOH HOH . J 5 HOH A 76 203 121 HOH HOH . J 5 HOH A 77 204 128 HOH HOH . J 5 HOH A 78 205 130 HOH HOH . J 5 HOH A 79 206 131 HOH HOH . J 5 HOH A 80 207 136 HOH HOH . J 5 HOH A 81 208 149 HOH HOH . J 5 HOH A 82 209 155 HOH HOH . J 5 HOH A 83 210 161 HOH HOH . J 5 HOH A 84 211 177 HOH HOH . J 5 HOH A 85 212 180 HOH HOH . J 5 HOH A 86 213 187 HOH HOH . J 5 HOH A 87 214 225 HOH HOH . J 5 HOH A 88 215 238 HOH HOH . J 5 HOH A 89 216 247 HOH HOH . J 5 HOH A 90 217 251 HOH HOH . J 5 HOH A 91 218 290 HOH HOH . J 5 HOH A 92 219 295 HOH HOH . J 5 HOH A 93 220 297 HOH HOH . J 5 HOH A 94 221 298 HOH HOH . J 5 HOH A 95 222 299 HOH HOH . J 5 HOH A 96 223 300 HOH HOH . J 5 HOH A 97 224 301 HOH HOH . J 5 HOH A 98 225 304 HOH HOH . J 5 HOH A 99 226 305 HOH HOH . J 5 HOH A 100 227 306 HOH HOH . J 5 HOH A 101 228 307 HOH HOH . J 5 HOH A 102 229 308 HOH HOH . J 5 HOH A 103 230 309 HOH HOH . J 5 HOH A 104 231 311 HOH HOH . J 5 HOH A 105 232 322 HOH HOH . J 5 HOH A 106 233 335 HOH HOH . J 5 HOH A 107 234 336 HOH HOH . J 5 HOH A 108 235 339 HOH HOH . J 5 HOH A 109 236 340 HOH HOH . J 5 HOH A 110 237 341 HOH HOH . J 5 HOH A 111 238 342 HOH HOH . J 5 HOH A 112 239 346 HOH HOH . J 5 HOH A 113 240 347 HOH HOH . J 5 HOH A 114 241 348 HOH HOH . J 5 HOH A 115 242 349 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -3.379 5.956 -5.344 1 57.46 ? C1 EDO 123 A 1 HETATM 2 O O1 EDO . . . E 4 -4.148 6.89 -6.115 1 56.51 ? O1 EDO 123 A 1 HETATM 3 C C2 EDO . . . E 4 -3.493 4.541 -5.913 1 57.83 ? C2 EDO 123 A 1 HETATM 4 O O2 EDO . . . E 4 -2.832 4.38 -7.177 1 59.06 ? O2 EDO 123 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #