data_3D78 # _model_server_result.job_id 22ZNgWUH_FduxFg5efywwQ _model_server_result.datetime_utc '2024-11-30 09:08:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":122}' # _entry.id 3D78 # _exptl.entry_id 3D78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D78 _cell.length_a 62.054 _cell.length_b 60.948 _cell.length_c 57.334 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,C,D,E,F,G,H,L 2 1 B,I,J,K,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 20 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 47 A CYS 47 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 89 A CYS 89 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf4 B SG CYS 20 B CYS 20 1_555 B SG CYS 51 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf5 B SG CYS 47 B CYS 47 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf6 B SG CYS 89 B CYS 89 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3D78 _atom_sites.fract_transf_matrix[1][1] 0.016115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NBB A 1 120 1 NBB NBB . D 3 EDO A 1 121 1 EDO EDO . E 3 EDO A 1 122 2 EDO EDO . F 3 EDO A 1 123 3 EDO EDO . G 3 EDO A 1 124 4 EDO EDO . H 3 EDO A 1 125 5 EDO EDO . I 2 NBB B 1 120 1 NBB NBB . J 2 NBB B 1 121 1 NBB NBB . K 3 EDO B 1 122 6 EDO EDO . L 4 HOH A 1 126 2 HOH HOH . L 4 HOH A 2 127 3 HOH HOH . L 4 HOH A 3 128 4 HOH HOH . L 4 HOH A 4 129 7 HOH HOH . L 4 HOH A 5 130 8 HOH HOH . L 4 HOH A 6 131 10 HOH HOH . L 4 HOH A 7 132 17 HOH HOH . L 4 HOH A 8 133 18 HOH HOH . L 4 HOH A 9 134 22 HOH HOH . L 4 HOH A 10 135 23 HOH HOH . L 4 HOH A 11 136 24 HOH HOH . L 4 HOH A 12 137 29 HOH HOH . L 4 HOH A 13 138 35 HOH HOH . L 4 HOH A 14 139 38 HOH HOH . L 4 HOH A 15 140 40 HOH HOH . L 4 HOH A 16 141 41 HOH HOH . L 4 HOH A 17 142 43 HOH HOH . L 4 HOH A 18 143 45 HOH HOH . L 4 HOH A 19 144 48 HOH HOH . L 4 HOH A 20 145 53 HOH HOH . L 4 HOH A 21 146 54 HOH HOH . L 4 HOH A 22 147 55 HOH HOH . L 4 HOH A 23 148 58 HOH HOH . L 4 HOH A 24 149 60 HOH HOH . L 4 HOH A 25 150 61 HOH HOH . L 4 HOH A 26 151 63 HOH HOH . L 4 HOH A 27 152 67 HOH HOH . L 4 HOH A 28 153 68 HOH HOH . L 4 HOH A 29 154 69 HOH HOH . L 4 HOH A 30 155 72 HOH HOH . L 4 HOH A 31 156 73 HOH HOH . L 4 HOH A 32 157 75 HOH HOH . L 4 HOH A 33 158 77 HOH HOH . L 4 HOH A 34 159 82 HOH HOH . L 4 HOH A 35 160 84 HOH HOH . L 4 HOH A 36 161 86 HOH HOH . L 4 HOH A 37 162 87 HOH HOH . L 4 HOH A 38 163 88 HOH HOH . L 4 HOH A 39 164 92 HOH HOH . L 4 HOH A 40 165 93 HOH HOH . L 4 HOH A 41 166 94 HOH HOH . L 4 HOH A 42 167 95 HOH HOH . L 4 HOH A 43 168 96 HOH HOH . L 4 HOH A 44 169 98 HOH HOH . L 4 HOH A 45 170 99 HOH HOH . L 4 HOH A 46 171 110 HOH HOH . L 4 HOH A 47 172 113 HOH HOH . L 4 HOH A 48 173 115 HOH HOH . L 4 HOH A 49 174 116 HOH HOH . L 4 HOH A 50 175 118 HOH HOH . L 4 HOH A 51 176 120 HOH HOH . L 4 HOH A 52 177 121 HOH HOH . L 4 HOH A 53 178 122 HOH HOH . L 4 HOH A 54 179 124 HOH HOH . L 4 HOH A 55 180 126 HOH HOH . L 4 HOH A 56 181 127 HOH HOH . L 4 HOH A 57 182 128 HOH HOH . L 4 HOH A 58 183 130 HOH HOH . L 4 HOH A 59 184 133 HOH HOH . L 4 HOH A 60 185 134 HOH HOH . L 4 HOH A 61 186 141 HOH HOH . L 4 HOH A 62 187 143 HOH HOH . L 4 HOH A 63 188 146 HOH HOH . L 4 HOH A 64 189 147 HOH HOH . L 4 HOH A 65 190 148 HOH HOH . L 4 HOH A 66 191 151 HOH HOH . L 4 HOH A 67 192 153 HOH HOH . L 4 HOH A 68 193 157 HOH HOH . L 4 HOH A 69 194 158 HOH HOH . L 4 HOH A 70 195 159 HOH HOH . L 4 HOH A 71 196 161 HOH HOH . L 4 HOH A 72 197 175 HOH HOH . L 4 HOH A 73 198 177 HOH HOH . L 4 HOH A 74 199 182 HOH HOH . L 4 HOH A 75 200 184 HOH HOH . L 4 HOH A 76 201 186 HOH HOH . L 4 HOH A 77 202 187 HOH HOH . L 4 HOH A 78 203 194 HOH HOH . L 4 HOH A 79 204 195 HOH HOH . L 4 HOH A 80 205 196 HOH HOH . L 4 HOH A 81 206 197 HOH HOH . L 4 HOH A 82 207 198 HOH HOH . L 4 HOH A 83 208 199 HOH HOH . L 4 HOH A 84 209 200 HOH HOH . L 4 HOH A 85 210 201 HOH HOH . L 4 HOH A 86 211 208 HOH HOH . L 4 HOH A 87 212 209 HOH HOH . L 4 HOH A 88 213 210 HOH HOH . L 4 HOH A 89 214 213 HOH HOH . L 4 HOH A 90 215 215 HOH HOH . L 4 HOH A 91 216 216 HOH HOH . L 4 HOH A 92 217 218 HOH HOH . L 4 HOH A 93 218 223 HOH HOH . L 4 HOH A 94 219 225 HOH HOH . L 4 HOH A 95 220 243 HOH HOH . L 4 HOH A 96 221 245 HOH HOH . L 4 HOH A 97 222 247 HOH HOH . L 4 HOH A 98 223 249 HOH HOH . L 4 HOH A 99 224 254 HOH HOH . L 4 HOH A 100 225 255 HOH HOH . L 4 HOH A 101 226 259 HOH HOH . L 4 HOH A 102 227 286 HOH HOH . L 4 HOH A 103 228 292 HOH HOH . L 4 HOH A 104 229 296 HOH HOH . L 4 HOH A 105 230 298 HOH HOH . L 4 HOH A 106 231 311 HOH HOH . L 4 HOH A 107 232 312 HOH HOH . L 4 HOH A 108 233 315 HOH HOH . L 4 HOH A 109 234 316 HOH HOH . L 4 HOH A 110 235 321 HOH HOH . L 4 HOH A 111 236 322 HOH HOH . L 4 HOH A 112 237 327 HOH HOH . L 4 HOH A 113 238 328 HOH HOH . L 4 HOH A 114 239 333 HOH HOH . L 4 HOH A 115 240 334 HOH HOH . M 4 HOH B 1 123 1 HOH HOH . M 4 HOH B 2 124 5 HOH HOH . M 4 HOH B 3 125 6 HOH HOH . M 4 HOH B 4 126 9 HOH HOH . M 4 HOH B 5 127 11 HOH HOH . M 4 HOH B 6 128 12 HOH HOH . M 4 HOH B 7 129 13 HOH HOH . M 4 HOH B 8 130 14 HOH HOH . M 4 HOH B 9 131 15 HOH HOH . M 4 HOH B 10 132 16 HOH HOH . M 4 HOH B 11 133 19 HOH HOH . M 4 HOH B 12 134 20 HOH HOH . M 4 HOH B 13 135 21 HOH HOH . M 4 HOH B 14 136 25 HOH HOH . M 4 HOH B 15 137 26 HOH HOH . M 4 HOH B 16 138 27 HOH HOH . M 4 HOH B 17 139 30 HOH HOH . M 4 HOH B 18 140 31 HOH HOH . M 4 HOH B 19 141 32 HOH HOH . M 4 HOH B 20 142 33 HOH HOH . M 4 HOH B 21 143 34 HOH HOH . M 4 HOH B 22 144 36 HOH HOH . M 4 HOH B 23 145 37 HOH HOH . M 4 HOH B 24 146 39 HOH HOH . M 4 HOH B 25 147 42 HOH HOH . M 4 HOH B 26 148 44 HOH HOH . M 4 HOH B 27 149 46 HOH HOH . M 4 HOH B 28 150 47 HOH HOH . M 4 HOH B 29 151 49 HOH HOH . M 4 HOH B 30 152 51 HOH HOH . M 4 HOH B 31 153 52 HOH HOH . M 4 HOH B 32 154 56 HOH HOH . M 4 HOH B 33 155 57 HOH HOH . M 4 HOH B 34 156 59 HOH HOH . M 4 HOH B 35 157 62 HOH HOH . M 4 HOH B 36 158 65 HOH HOH . M 4 HOH B 37 159 66 HOH HOH . M 4 HOH B 38 160 70 HOH HOH . M 4 HOH B 39 161 71 HOH HOH . M 4 HOH B 40 162 74 HOH HOH . M 4 HOH B 41 163 76 HOH HOH . M 4 HOH B 42 164 78 HOH HOH . M 4 HOH B 43 165 79 HOH HOH . M 4 HOH B 44 166 80 HOH HOH . M 4 HOH B 45 167 81 HOH HOH . M 4 HOH B 46 168 83 HOH HOH . M 4 HOH B 47 169 85 HOH HOH . M 4 HOH B 48 170 89 HOH HOH . M 4 HOH B 49 171 90 HOH HOH . M 4 HOH B 50 172 91 HOH HOH . M 4 HOH B 51 173 97 HOH HOH . M 4 HOH B 52 174 102 HOH HOH . M 4 HOH B 53 175 103 HOH HOH . M 4 HOH B 54 176 104 HOH HOH . M 4 HOH B 55 177 105 HOH HOH . M 4 HOH B 56 178 107 HOH HOH . M 4 HOH B 57 179 108 HOH HOH . M 4 HOH B 58 180 111 HOH HOH . M 4 HOH B 59 181 112 HOH HOH . M 4 HOH B 60 182 114 HOH HOH . M 4 HOH B 61 183 117 HOH HOH . M 4 HOH B 62 184 119 HOH HOH . M 4 HOH B 63 185 123 HOH HOH . M 4 HOH B 64 186 132 HOH HOH . M 4 HOH B 65 187 135 HOH HOH . M 4 HOH B 66 188 136 HOH HOH . M 4 HOH B 67 189 137 HOH HOH . M 4 HOH B 68 190 138 HOH HOH . M 4 HOH B 69 191 139 HOH HOH . M 4 HOH B 70 192 140 HOH HOH . M 4 HOH B 71 193 142 HOH HOH . M 4 HOH B 72 194 144 HOH HOH . M 4 HOH B 73 195 145 HOH HOH . M 4 HOH B 74 196 149 HOH HOH . M 4 HOH B 75 197 150 HOH HOH . M 4 HOH B 76 198 152 HOH HOH . M 4 HOH B 77 199 154 HOH HOH . M 4 HOH B 78 200 155 HOH HOH . M 4 HOH B 79 201 162 HOH HOH . M 4 HOH B 80 202 163 HOH HOH . M 4 HOH B 81 203 164 HOH HOH . M 4 HOH B 82 204 165 HOH HOH . M 4 HOH B 83 205 167 HOH HOH . M 4 HOH B 84 206 168 HOH HOH . M 4 HOH B 85 207 169 HOH HOH . M 4 HOH B 86 208 171 HOH HOH . M 4 HOH B 87 209 172 HOH HOH . M 4 HOH B 88 210 178 HOH HOH . M 4 HOH B 89 211 188 HOH HOH . M 4 HOH B 90 212 189 HOH HOH . M 4 HOH B 91 213 192 HOH HOH . M 4 HOH B 92 214 193 HOH HOH . M 4 HOH B 93 215 202 HOH HOH . M 4 HOH B 94 216 211 HOH HOH . M 4 HOH B 95 217 219 HOH HOH . M 4 HOH B 96 218 226 HOH HOH . M 4 HOH B 97 219 228 HOH HOH . M 4 HOH B 98 220 231 HOH HOH . M 4 HOH B 99 221 240 HOH HOH . M 4 HOH B 100 222 241 HOH HOH . M 4 HOH B 101 223 250 HOH HOH . M 4 HOH B 102 224 253 HOH HOH . M 4 HOH B 103 225 260 HOH HOH . M 4 HOH B 104 226 261 HOH HOH . M 4 HOH B 105 227 280 HOH HOH . M 4 HOH B 106 228 287 HOH HOH . M 4 HOH B 107 229 290 HOH HOH . M 4 HOH B 108 230 299 HOH HOH . M 4 HOH B 109 231 300 HOH HOH . M 4 HOH B 110 232 301 HOH HOH . M 4 HOH B 111 233 302 HOH HOH . M 4 HOH B 112 234 303 HOH HOH . M 4 HOH B 113 235 304 HOH HOH . M 4 HOH B 114 236 305 HOH HOH . M 4 HOH B 115 237 318 HOH HOH . M 4 HOH B 116 238 319 HOH HOH . M 4 HOH B 117 239 323 HOH HOH . M 4 HOH B 118 240 324 HOH HOH . M 4 HOH B 119 241 325 HOH HOH . M 4 HOH B 120 242 326 HOH HOH . M 4 HOH B 121 243 329 HOH HOH . M 4 HOH B 122 244 330 HOH HOH . M 4 HOH B 123 245 331 HOH HOH . M 4 HOH B 124 246 332 HOH HOH . M 4 HOH B 125 247 335 HOH HOH . M 4 HOH B 126 248 336 HOH HOH . M 4 HOH B 127 249 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 3 2.812 18.029 -29.121 1 64.34 ? C1 EDO 122 B 1 HETATM 2 O O1 EDO . . . K 3 1.699 18.923 -29.245 1 64.04 ? O1 EDO 122 B 1 HETATM 3 C C2 EDO . . . K 3 3.406 17.624 -30.471 1 64.54 ? C2 EDO 122 B 1 HETATM 4 O O2 EDO . . . K 3 2.617 17.985 -31.621 1 64.67 ? O2 EDO 122 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #