data_3D7E # _model_server_result.job_id 5_af1V7wARgTS_tBHE_g0A _model_server_result.datetime_utc '2025-01-02 21:10:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":507}' # _entry.id 3D7E # _exptl.entry_id 3D7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D7E _cell.length_a 95.572 _cell.length_b 200.019 _cell.length_c 56.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3D7E _atom_sites.fract_transf_matrix[1][1] 0.010463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL O 1 507 507 GOL GOL . D 2 GOL X 1 507 507 GOL GOL . E 3 HOH O 1 508 508 HOH HOH . E 3 HOH O 2 509 509 HOH HOH . E 3 HOH O 3 510 510 HOH HOH . E 3 HOH O 4 511 511 HOH HOH . E 3 HOH O 5 512 512 HOH HOH . E 3 HOH O 6 513 513 HOH HOH . E 3 HOH O 7 514 514 HOH HOH . E 3 HOH O 8 515 515 HOH HOH . E 3 HOH O 9 516 516 HOH HOH . E 3 HOH O 10 517 517 HOH HOH . E 3 HOH O 11 518 518 HOH HOH . E 3 HOH O 12 519 519 HOH HOH . E 3 HOH O 13 520 520 HOH HOH . E 3 HOH O 14 521 521 HOH HOH . E 3 HOH O 15 522 522 HOH HOH . E 3 HOH O 16 523 523 HOH HOH . E 3 HOH O 17 524 524 HOH HOH . E 3 HOH O 18 525 525 HOH HOH . E 3 HOH O 19 526 526 HOH HOH . E 3 HOH O 20 527 527 HOH HOH . E 3 HOH O 21 528 528 HOH HOH . E 3 HOH O 22 529 529 HOH HOH . E 3 HOH O 23 530 530 HOH HOH . E 3 HOH O 24 531 531 HOH HOH . E 3 HOH O 25 532 532 HOH HOH . E 3 HOH O 26 533 533 HOH HOH . E 3 HOH O 27 534 534 HOH HOH . E 3 HOH O 28 535 535 HOH HOH . E 3 HOH O 29 536 536 HOH HOH . E 3 HOH O 30 537 537 HOH HOH . E 3 HOH O 31 538 538 HOH HOH . E 3 HOH O 32 539 539 HOH HOH . E 3 HOH O 33 540 540 HOH HOH . E 3 HOH O 34 541 541 HOH HOH . E 3 HOH O 35 542 542 HOH HOH . E 3 HOH O 36 543 543 HOH HOH . E 3 HOH O 37 544 544 HOH HOH . E 3 HOH O 38 545 545 HOH HOH . E 3 HOH O 39 546 546 HOH HOH . E 3 HOH O 40 547 547 HOH HOH . E 3 HOH O 41 549 549 HOH HOH . E 3 HOH O 42 550 550 HOH HOH . E 3 HOH O 43 551 551 HOH HOH . E 3 HOH O 44 552 552 HOH HOH . E 3 HOH O 45 553 553 HOH HOH . E 3 HOH O 46 554 554 HOH HOH . E 3 HOH O 47 555 555 HOH HOH . E 3 HOH O 48 556 556 HOH HOH . E 3 HOH O 49 557 557 HOH HOH . E 3 HOH O 50 558 558 HOH HOH . E 3 HOH O 51 559 559 HOH HOH . E 3 HOH O 52 560 560 HOH HOH . E 3 HOH O 53 561 561 HOH HOH . E 3 HOH O 54 562 562 HOH HOH . E 3 HOH O 55 564 564 HOH HOH . E 3 HOH O 56 566 566 HOH HOH . E 3 HOH O 57 567 567 HOH HOH . E 3 HOH O 58 568 568 HOH HOH . E 3 HOH O 59 569 569 HOH HOH . E 3 HOH O 60 570 570 HOH HOH . E 3 HOH O 61 571 571 HOH HOH . E 3 HOH O 62 572 572 HOH HOH . E 3 HOH O 63 573 573 HOH HOH . E 3 HOH O 64 574 574 HOH HOH . E 3 HOH O 65 575 575 HOH HOH . E 3 HOH O 66 576 576 HOH HOH . E 3 HOH O 67 577 577 HOH HOH . E 3 HOH O 68 578 578 HOH HOH . E 3 HOH O 69 579 579 HOH HOH . E 3 HOH O 70 580 580 HOH HOH . E 3 HOH O 71 581 581 HOH HOH . E 3 HOH O 72 582 582 HOH HOH . E 3 HOH O 73 583 583 HOH HOH . E 3 HOH O 74 584 584 HOH HOH . E 3 HOH O 75 585 585 HOH HOH . E 3 HOH O 76 587 587 HOH HOH . E 3 HOH O 77 588 588 HOH HOH . E 3 HOH O 78 589 589 HOH HOH . E 3 HOH O 79 590 590 HOH HOH . E 3 HOH O 80 591 591 HOH HOH . E 3 HOH O 81 593 593 HOH HOH . E 3 HOH O 82 594 594 HOH HOH . E 3 HOH O 83 595 595 HOH HOH . E 3 HOH O 84 596 596 HOH HOH . E 3 HOH O 85 597 597 HOH HOH . E 3 HOH O 86 598 598 HOH HOH . E 3 HOH O 87 599 599 HOH HOH . E 3 HOH O 88 600 600 HOH HOH . E 3 HOH O 89 601 601 HOH HOH . E 3 HOH O 90 602 602 HOH HOH . E 3 HOH O 91 603 603 HOH HOH . E 3 HOH O 92 604 604 HOH HOH . E 3 HOH O 93 605 605 HOH HOH . E 3 HOH O 94 607 607 HOH HOH . E 3 HOH O 95 608 608 HOH HOH . E 3 HOH O 96 609 609 HOH HOH . E 3 HOH O 97 610 610 HOH HOH . E 3 HOH O 98 611 611 HOH HOH . E 3 HOH O 99 612 612 HOH HOH . E 3 HOH O 100 613 613 HOH HOH . E 3 HOH O 101 614 614 HOH HOH . E 3 HOH O 102 615 615 HOH HOH . E 3 HOH O 103 616 616 HOH HOH . E 3 HOH O 104 617 617 HOH HOH . E 3 HOH O 105 618 618 HOH HOH . E 3 HOH O 106 619 619 HOH HOH . E 3 HOH O 107 621 621 HOH HOH . E 3 HOH O 108 622 622 HOH HOH . E 3 HOH O 109 623 623 HOH HOH . E 3 HOH O 110 624 624 HOH HOH . E 3 HOH O 111 625 625 HOH HOH . E 3 HOH O 112 626 626 HOH HOH . E 3 HOH O 113 627 627 HOH HOH . E 3 HOH O 114 628 628 HOH HOH . E 3 HOH O 115 629 629 HOH HOH . E 3 HOH O 116 630 630 HOH HOH . E 3 HOH O 117 631 631 HOH HOH . E 3 HOH O 118 633 633 HOH HOH . E 3 HOH O 119 634 634 HOH HOH . E 3 HOH O 120 635 635 HOH HOH . E 3 HOH O 121 636 636 HOH HOH . E 3 HOH O 122 637 637 HOH HOH . E 3 HOH O 123 638 638 HOH HOH . E 3 HOH O 124 639 639 HOH HOH . E 3 HOH O 125 640 640 HOH HOH . E 3 HOH O 126 641 641 HOH HOH . E 3 HOH O 127 642 642 HOH HOH . E 3 HOH O 128 643 643 HOH HOH . E 3 HOH O 129 644 644 HOH HOH . E 3 HOH O 130 645 645 HOH HOH . E 3 HOH O 131 646 646 HOH HOH . E 3 HOH O 132 647 647 HOH HOH . E 3 HOH O 133 648 648 HOH HOH . E 3 HOH O 134 649 649 HOH HOH . E 3 HOH O 135 650 650 HOH HOH . E 3 HOH O 136 651 651 HOH HOH . E 3 HOH O 137 652 652 HOH HOH . E 3 HOH O 138 654 654 HOH HOH . E 3 HOH O 139 655 655 HOH HOH . E 3 HOH O 140 656 656 HOH HOH . E 3 HOH O 141 657 657 HOH HOH . E 3 HOH O 142 658 658 HOH HOH . E 3 HOH O 143 659 659 HOH HOH . E 3 HOH O 144 660 660 HOH HOH . E 3 HOH O 145 661 661 HOH HOH . E 3 HOH O 146 662 662 HOH HOH . E 3 HOH O 147 663 663 HOH HOH . E 3 HOH O 148 664 664 HOH HOH . E 3 HOH O 149 665 665 HOH HOH . E 3 HOH O 150 666 666 HOH HOH . E 3 HOH O 151 667 667 HOH HOH . E 3 HOH O 152 668 668 HOH HOH . E 3 HOH O 153 669 669 HOH HOH . E 3 HOH O 154 670 670 HOH HOH . E 3 HOH O 155 671 671 HOH HOH . E 3 HOH O 156 673 673 HOH HOH . E 3 HOH O 157 674 674 HOH HOH . E 3 HOH O 158 675 675 HOH HOH . E 3 HOH O 159 676 676 HOH HOH . E 3 HOH O 160 677 677 HOH HOH . E 3 HOH O 161 679 679 HOH HOH . E 3 HOH O 162 680 680 HOH HOH . E 3 HOH O 163 681 681 HOH HOH . E 3 HOH O 164 682 682 HOH HOH . E 3 HOH O 165 683 683 HOH HOH . F 3 HOH X 1 508 508 HOH HOH . F 3 HOH X 2 509 509 HOH HOH . F 3 HOH X 3 510 510 HOH HOH . F 3 HOH X 4 511 511 HOH HOH . F 3 HOH X 5 512 512 HOH HOH . F 3 HOH X 6 513 513 HOH HOH . F 3 HOH X 7 514 514 HOH HOH . F 3 HOH X 8 515 515 HOH HOH . F 3 HOH X 9 516 516 HOH HOH . F 3 HOH X 10 517 517 HOH HOH . F 3 HOH X 11 518 518 HOH HOH . F 3 HOH X 12 519 519 HOH HOH . F 3 HOH X 13 520 520 HOH HOH . F 3 HOH X 14 521 521 HOH HOH . F 3 HOH X 15 522 522 HOH HOH . F 3 HOH X 16 524 524 HOH HOH . F 3 HOH X 17 526 526 HOH HOH . F 3 HOH X 18 528 528 HOH HOH . F 3 HOH X 19 529 529 HOH HOH . F 3 HOH X 20 530 530 HOH HOH . F 3 HOH X 21 531 531 HOH HOH . F 3 HOH X 22 532 532 HOH HOH . F 3 HOH X 23 533 533 HOH HOH . F 3 HOH X 24 534 534 HOH HOH . F 3 HOH X 25 535 535 HOH HOH . F 3 HOH X 26 536 536 HOH HOH . F 3 HOH X 27 537 537 HOH HOH . F 3 HOH X 28 538 538 HOH HOH . F 3 HOH X 29 539 539 HOH HOH . F 3 HOH X 30 540 540 HOH HOH . F 3 HOH X 31 541 541 HOH HOH . F 3 HOH X 32 542 542 HOH HOH . F 3 HOH X 33 544 544 HOH HOH . F 3 HOH X 34 545 545 HOH HOH . F 3 HOH X 35 546 546 HOH HOH . F 3 HOH X 36 547 547 HOH HOH . F 3 HOH X 37 549 549 HOH HOH . F 3 HOH X 38 550 550 HOH HOH . F 3 HOH X 39 551 551 HOH HOH . F 3 HOH X 40 552 552 HOH HOH . F 3 HOH X 41 553 553 HOH HOH . F 3 HOH X 42 554 554 HOH HOH . F 3 HOH X 43 555 555 HOH HOH . F 3 HOH X 44 556 556 HOH HOH . F 3 HOH X 45 558 558 HOH HOH . F 3 HOH X 46 559 559 HOH HOH . F 3 HOH X 47 560 560 HOH HOH . F 3 HOH X 48 561 561 HOH HOH . F 3 HOH X 49 563 563 HOH HOH . F 3 HOH X 50 565 565 HOH HOH . F 3 HOH X 51 567 567 HOH HOH . F 3 HOH X 52 568 568 HOH HOH . F 3 HOH X 53 569 569 HOH HOH . F 3 HOH X 54 570 570 HOH HOH . F 3 HOH X 55 572 572 HOH HOH . F 3 HOH X 56 573 573 HOH HOH . F 3 HOH X 57 574 574 HOH HOH . F 3 HOH X 58 575 575 HOH HOH . F 3 HOH X 59 576 576 HOH HOH . F 3 HOH X 60 577 577 HOH HOH . F 3 HOH X 61 578 578 HOH HOH . F 3 HOH X 62 580 580 HOH HOH . F 3 HOH X 63 581 581 HOH HOH . F 3 HOH X 64 583 583 HOH HOH . F 3 HOH X 65 585 585 HOH HOH . F 3 HOH X 66 586 586 HOH HOH . F 3 HOH X 67 587 587 HOH HOH . F 3 HOH X 68 588 588 HOH HOH . F 3 HOH X 69 589 589 HOH HOH . F 3 HOH X 70 590 590 HOH HOH . F 3 HOH X 71 592 592 HOH HOH . F 3 HOH X 72 593 593 HOH HOH . F 3 HOH X 73 594 594 HOH HOH . F 3 HOH X 74 595 595 HOH HOH . F 3 HOH X 75 596 596 HOH HOH . F 3 HOH X 76 597 597 HOH HOH . F 3 HOH X 77 598 598 HOH HOH . F 3 HOH X 78 599 599 HOH HOH . F 3 HOH X 79 600 600 HOH HOH . F 3 HOH X 80 602 602 HOH HOH . F 3 HOH X 81 603 603 HOH HOH . F 3 HOH X 82 604 604 HOH HOH . F 3 HOH X 83 606 606 HOH HOH . F 3 HOH X 84 607 607 HOH HOH . F 3 HOH X 85 608 608 HOH HOH . F 3 HOH X 86 609 609 HOH HOH . F 3 HOH X 87 610 610 HOH HOH . F 3 HOH X 88 611 611 HOH HOH . F 3 HOH X 89 612 612 HOH HOH . F 3 HOH X 90 613 613 HOH HOH . F 3 HOH X 91 615 615 HOH HOH . F 3 HOH X 92 616 616 HOH HOH . F 3 HOH X 93 618 618 HOH HOH . F 3 HOH X 94 620 620 HOH HOH . F 3 HOH X 95 621 621 HOH HOH . F 3 HOH X 96 622 622 HOH HOH . F 3 HOH X 97 623 623 HOH HOH . F 3 HOH X 98 624 624 HOH HOH . F 3 HOH X 99 625 625 HOH HOH . F 3 HOH X 100 626 626 HOH HOH . F 3 HOH X 101 627 627 HOH HOH . F 3 HOH X 102 628 628 HOH HOH . F 3 HOH X 103 629 629 HOH HOH . F 3 HOH X 104 630 630 HOH HOH . F 3 HOH X 105 631 631 HOH HOH . F 3 HOH X 106 632 632 HOH HOH . F 3 HOH X 107 633 633 HOH HOH . F 3 HOH X 108 634 634 HOH HOH . F 3 HOH X 109 635 635 HOH HOH . F 3 HOH X 110 636 636 HOH HOH . F 3 HOH X 111 637 637 HOH HOH . F 3 HOH X 112 638 638 HOH HOH . F 3 HOH X 113 639 639 HOH HOH . F 3 HOH X 114 641 641 HOH HOH . F 3 HOH X 115 645 645 HOH HOH . F 3 HOH X 116 646 646 HOH HOH . F 3 HOH X 117 647 647 HOH HOH . F 3 HOH X 118 648 648 HOH HOH . F 3 HOH X 119 649 649 HOH HOH . F 3 HOH X 120 650 650 HOH HOH . F 3 HOH X 121 651 651 HOH HOH . F 3 HOH X 122 652 652 HOH HOH . F 3 HOH X 123 654 654 HOH HOH . F 3 HOH X 124 655 655 HOH HOH . F 3 HOH X 125 656 656 HOH HOH . F 3 HOH X 126 657 657 HOH HOH . F 3 HOH X 127 658 658 HOH HOH . F 3 HOH X 128 659 659 HOH HOH . F 3 HOH X 129 661 661 HOH HOH . F 3 HOH X 130 662 662 HOH HOH . F 3 HOH X 131 663 663 HOH HOH . F 3 HOH X 132 664 664 HOH HOH . F 3 HOH X 133 666 666 HOH HOH . F 3 HOH X 134 667 667 HOH HOH . F 3 HOH X 135 669 669 HOH HOH . F 3 HOH X 136 670 670 HOH HOH . F 3 HOH X 137 671 671 HOH HOH . F 3 HOH X 138 672 672 HOH HOH . F 3 HOH X 139 673 673 HOH HOH . F 3 HOH X 140 674 674 HOH HOH . F 3 HOH X 141 675 675 HOH HOH . F 3 HOH X 142 676 676 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 74.923 22.83 -13.236 1 18.1 ? C1 GOL 507 O 1 HETATM 2 O O1 GOL . . . C 2 76.239 23.302 -13.039 1 18.24 ? O1 GOL 507 O 1 HETATM 3 C C2 GOL . . . C 2 74.193 23.316 -11.938 1 16.29 ? C2 GOL 507 O 1 HETATM 4 O O2 GOL . . . C 2 74.095 24.79 -11.881 1 17.97 ? O2 GOL 507 O 1 HETATM 5 C C3 GOL . . . C 2 72.814 22.712 -12.176 1 16.81 ? C3 GOL 507 O 1 HETATM 6 O O3 GOL . . . C 2 72.005 23.163 -11.078 1 15.36 ? O3 GOL 507 O 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #