data_3D7I # _model_server_result.job_id QatsrYBhslHRoPiYvGMt_Q _model_server_result.datetime_utc '2024-11-14 01:42:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":105}' # _entry.id 3D7I # _exptl.entry_id 3D7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D7I _cell.length_a 73.571 _cell.length_b 92.672 _cell.length_c 111.237 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 55.6185 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 11 A GLY 10 1_555 A N MSE 12 A MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 12 A MSE 11 1_555 A N LYS 13 A LYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C GLN 64 A GLN 63 1_555 A N MSE 65 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 A C MSE 65 A MSE 64 1_555 A N LYS 66 A LYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C ALA 68 A ALA 67 1_555 A N MSE 69 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 69 A MSE 68 1_555 A N LYS 70 A LYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C GLY 91 A GLY 90 1_555 A N MSE 92 A MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 92 A MSE 91 1_555 A N PRO 93 A PRO 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale9 A C ALA 98 A ALA 97 1_555 A N MSE 99 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale10 A C MSE 99 A MSE 98 1_555 A N LYS 100 A LYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale11 B C GLY 11 B GLY 10 1_555 B N MSE 12 B MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 B C MSE 12 B MSE 11 1_555 B N LYS 13 B LYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 B C GLN 64 B GLN 63 1_555 B N MSE 65 B MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 B C MSE 65 B MSE 64 1_555 B N LYS 66 B LYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale15 B C ALA 68 B ALA 67 1_555 B N MSE 69 B MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C MSE 69 B MSE 68 1_555 B N LYS 70 B LYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C GLY 91 B GLY 90 1_555 B N MSE 92 B MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale18 B C MSE 92 B MSE 91 1_555 B N PRO 93 B PRO 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale19 B C ALA 98 B ALA 97 1_555 B N MSE 99 B MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale20 B C MSE 99 B MSE 98 1_555 B N LYS 100 B LYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 C C GLY 11 C GLY 10 1_555 C N MSE 12 C MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 C C MSE 12 C MSE 11 1_555 C N LYS 13 C LYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale23 C C GLN 64 C GLN 63 1_555 C N MSE 65 C MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale24 C C MSE 65 C MSE 64 1_555 C N LYS 66 C LYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale25 C C ALA 68 C ALA 67 1_555 C N MSE 69 C MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 C C MSE 69 C MSE 68 1_555 C N LYS 70 C LYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale27 C C GLY 91 C GLY 90 1_555 C N MSE 92 C MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale28 C C MSE 92 C MSE 91 1_555 C N PRO 93 C PRO 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale29 C C ALA 98 C ALA 97 1_555 C N MSE 99 C MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale30 C C MSE 99 C MSE 98 1_555 C N LYS 100 C LYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 235 n n O1 HO1 PG4 sing 236 n n C1 C2 PG4 sing 237 n n C1 H11 PG4 sing 238 n n C1 H12 PG4 sing 239 n n C2 O2 PG4 sing 240 n n C2 H21 PG4 sing 241 n n C2 H22 PG4 sing 242 n n O2 C3 PG4 sing 243 n n C3 C4 PG4 sing 244 n n C3 H31 PG4 sing 245 n n C3 H32 PG4 sing 246 n n C4 O3 PG4 sing 247 n n C4 H41 PG4 sing 248 n n C4 H42 PG4 sing 249 n n O3 C5 PG4 sing 250 n n C5 C6 PG4 sing 251 n n C5 H51 PG4 sing 252 n n C5 H52 PG4 sing 253 n n C6 O4 PG4 sing 254 n n C6 H61 PG4 sing 255 n n C6 H62 PG4 sing 256 n n O4 C7 PG4 sing 257 n n C7 C8 PG4 sing 258 n n C7 H71 PG4 sing 259 n n C7 H72 PG4 sing 260 n n C8 O5 PG4 sing 261 n n C8 H81 PG4 sing 262 n n C8 H82 PG4 sing 263 n n O5 HO5 PG4 sing 264 n n # _atom_sites.entry_id 3D7I _atom_sites.fract_transf_matrix[1][1] 0.013592 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 105 1 SO4 SO4 . E 2 SO4 A 1 106 2 SO4 SO4 . F 2 SO4 B 1 105 3 SO4 SO4 . G 3 PG4 C 1 105 4 PG4 PG4 . H 4 HOH A 1 107 8 HOH HOH . H 4 HOH A 2 108 14 HOH HOH . H 4 HOH A 3 109 19 HOH HOH . H 4 HOH A 4 110 20 HOH HOH . H 4 HOH A 5 111 21 HOH HOH . H 4 HOH A 6 112 24 HOH HOH . H 4 HOH A 7 113 25 HOH HOH . H 4 HOH A 8 114 32 HOH HOH . H 4 HOH A 9 115 33 HOH HOH . H 4 HOH A 10 116 42 HOH HOH . H 4 HOH A 11 117 43 HOH HOH . H 4 HOH A 12 118 45 HOH HOH . H 4 HOH A 13 119 46 HOH HOH . H 4 HOH A 14 120 47 HOH HOH . H 4 HOH A 15 121 50 HOH HOH . H 4 HOH A 16 122 51 HOH HOH . H 4 HOH A 17 123 53 HOH HOH . H 4 HOH A 18 124 59 HOH HOH . H 4 HOH A 19 125 60 HOH HOH . H 4 HOH A 20 126 62 HOH HOH . H 4 HOH A 21 127 70 HOH HOH . H 4 HOH A 22 128 72 HOH HOH . H 4 HOH A 23 129 74 HOH HOH . H 4 HOH A 24 130 76 HOH HOH . H 4 HOH A 25 131 77 HOH HOH . H 4 HOH A 26 132 81 HOH HOH . H 4 HOH A 27 133 83 HOH HOH . H 4 HOH A 28 134 85 HOH HOH . H 4 HOH A 29 135 86 HOH HOH . H 4 HOH A 30 136 90 HOH HOH . H 4 HOH A 31 137 94 HOH HOH . H 4 HOH A 32 138 95 HOH HOH . H 4 HOH A 33 139 96 HOH HOH . H 4 HOH A 34 140 100 HOH HOH . H 4 HOH A 35 141 101 HOH HOH . H 4 HOH A 36 142 102 HOH HOH . H 4 HOH A 37 143 103 HOH HOH . H 4 HOH A 38 144 104 HOH HOH . H 4 HOH A 39 145 106 HOH HOH . H 4 HOH A 40 146 5 HOH HOH . H 4 HOH A 41 147 6 HOH HOH . I 4 HOH B 1 106 11 HOH HOH . I 4 HOH B 2 107 13 HOH HOH . I 4 HOH B 3 108 17 HOH HOH . I 4 HOH B 4 109 18 HOH HOH . I 4 HOH B 5 110 29 HOH HOH . I 4 HOH B 6 111 30 HOH HOH . I 4 HOH B 7 112 31 HOH HOH . I 4 HOH B 8 113 35 HOH HOH . I 4 HOH B 9 114 36 HOH HOH . I 4 HOH B 10 115 37 HOH HOH . I 4 HOH B 11 116 39 HOH HOH . I 4 HOH B 12 117 40 HOH HOH . I 4 HOH B 13 118 41 HOH HOH . I 4 HOH B 14 119 44 HOH HOH . I 4 HOH B 15 120 48 HOH HOH . I 4 HOH B 16 121 49 HOH HOH . I 4 HOH B 17 122 54 HOH HOH . I 4 HOH B 18 123 55 HOH HOH . I 4 HOH B 19 124 56 HOH HOH . I 4 HOH B 20 125 63 HOH HOH . I 4 HOH B 21 126 65 HOH HOH . I 4 HOH B 22 127 66 HOH HOH . I 4 HOH B 23 128 68 HOH HOH . I 4 HOH B 24 129 78 HOH HOH . I 4 HOH B 25 130 79 HOH HOH . I 4 HOH B 26 131 82 HOH HOH . I 4 HOH B 27 132 84 HOH HOH . I 4 HOH B 28 133 93 HOH HOH . I 4 HOH B 29 134 99 HOH HOH . I 4 HOH B 30 135 105 HOH HOH . I 4 HOH B 31 136 107 HOH HOH . J 4 HOH C 1 108 7 HOH HOH . J 4 HOH C 2 109 9 HOH HOH . J 4 HOH C 3 110 10 HOH HOH . J 4 HOH C 4 111 12 HOH HOH . J 4 HOH C 5 112 15 HOH HOH . J 4 HOH C 6 113 16 HOH HOH . J 4 HOH C 7 114 22 HOH HOH . J 4 HOH C 8 115 23 HOH HOH . J 4 HOH C 9 116 26 HOH HOH . J 4 HOH C 10 117 27 HOH HOH . J 4 HOH C 11 118 28 HOH HOH . J 4 HOH C 12 119 34 HOH HOH . J 4 HOH C 13 120 38 HOH HOH . J 4 HOH C 14 121 52 HOH HOH . J 4 HOH C 15 122 57 HOH HOH . J 4 HOH C 16 123 58 HOH HOH . J 4 HOH C 17 124 61 HOH HOH . J 4 HOH C 18 125 64 HOH HOH . J 4 HOH C 19 126 69 HOH HOH . J 4 HOH C 20 127 71 HOH HOH . J 4 HOH C 21 128 73 HOH HOH . J 4 HOH C 22 129 75 HOH HOH . J 4 HOH C 23 130 80 HOH HOH . J 4 HOH C 24 131 87 HOH HOH . J 4 HOH C 25 132 88 HOH HOH . J 4 HOH C 26 133 89 HOH HOH . J 4 HOH C 27 134 91 HOH HOH . J 4 HOH C 28 135 92 HOH HOH . J 4 HOH C 29 136 97 HOH HOH . J 4 HOH C 30 137 98 HOH HOH . J 4 HOH C 31 138 108 HOH HOH . J 4 HOH C 32 139 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . G 3 -21.79 77.813 36.909 1 36.26 ? O1 PG4 105 C 1 HETATM 2 C C1 PG4 . . . G 3 -22.025 79.226 36.769 1 53.6 ? C1 PG4 105 C 1 HETATM 3 C C2 PG4 . . . G 3 -22.103 79.63 35.31 1 46.13 ? C2 PG4 105 C 1 HETATM 4 O O2 PG4 . . . G 3 -20.785 79.941 34.862 1 50.1 ? O2 PG4 105 C 1 HETATM 5 C C3 PG4 . . . G 3 -20.28 78.918 34.023 1 30.84 ? C3 PG4 105 C 1 HETATM 6 C C4 PG4 . . . G 3 -18.995 79.363 33.333 1 35.34 ? C4 PG4 105 C 1 HETATM 7 O O3 PG4 . . . G 3 -18.544 78.578 32.194 1 40.61 ? O3 PG4 105 C 1 HETATM 8 C C5 PG4 . . . G 3 -19.485 77.9 31.383 1 36.19 ? C5 PG4 105 C 1 HETATM 9 C C6 PG4 . . . G 3 -18.982 77.492 30.008 1 37.51 ? C6 PG4 105 C 1 HETATM 10 O O4 PG4 . . . G 3 -19.114 78.67 29.184 1 35.36 ? O4 PG4 105 C 1 HETATM 11 C C7 PG4 . . . G 3 -19.786 78.566 27.928 1 38.7 ? C7 PG4 105 C 1 HETATM 12 C C8 PG4 . . . G 3 -19.693 79.955 27.272 1 38.67 ? C8 PG4 105 C 1 HETATM 13 O O5 PG4 . . . G 3 -20.151 81.004 28.186 1 30.12 ? O5 PG4 105 C 1 # _model_server_stats.io_time_ms 125 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #