data_3D7K
#
_model_server_result.job_id            0eyaV8JYrLsQZ-HlUlIrUA 
_model_server_result.datetime_utc      '2024-11-06 21:25:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d7k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":571}' 
#
_entry.id    3D7K 
#
_exptl.entry_id    3D7K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3D7K 
_cell.length_a            151.936 
_cell.length_b            151.936 
_cell.length_c            98.217 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D7K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 32.739 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 448 A ASP 448 1_555 C CA CA . A CA 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc2 A OD1 ASN 475 A ASN 475 1_555 C CA CA . A CA 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc3 A O SER 477 A SER 477 1_555 C CA CA . A CA 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc4 C CA CA . A CA 571 1_555 D O1A D7K . A D7K 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc5 C CA CA . A CA 571 1_555 D O2B D7K . A D7K 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc6 C CA CA . A CA 571 1_555 G O HOH . A HOH 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc7 B OD1 ASP 448 B ASP 448 1_555 E CA CA . B CA 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc8 B OD1 ASN 475 B ASN 475 1_555 E CA CA . B CA 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc9 B O SER 477 B SER 477 1_555 E CA CA . B CA 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc10 E CA CA . B CA 571 1_555 F O2B D7K . B D7K 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc11 E CA CA . B CA 571 1_555 H O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3D7K 
_atom_sites.fract_transf_matrix[1][1]    0.006582 
_atom_sites.fract_transf_matrix[1][2]    0.0038 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010182 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 571 564 CA CA . 
D 3 D7K A 1 572 565 D7K D7K . 
E 2 CA B 1 571 564 CA CA . 
F 3 D7K B 1 572 565 D7K D7K . 
G 4 HOH A 1 573 566 HOH HOH . 
G 4 HOH A 2 574 567 HOH HOH . 
G 4 HOH A 3 575 568 HOH HOH . 
G 4 HOH A 4 576 570 HOH HOH . 
G 4 HOH A 5 577 571 HOH HOH . 
G 4 HOH A 6 578 572 HOH HOH . 
G 4 HOH A 7 579 573 HOH HOH . 
G 4 HOH A 8 580 574 HOH HOH . 
G 4 HOH A 9 581 575 HOH HOH . 
G 4 HOH A 10 582 576 HOH HOH . 
G 4 HOH A 11 583 577 HOH HOH . 
G 4 HOH A 12 584 578 HOH HOH . 
G 4 HOH A 13 585 579 HOH HOH . 
G 4 HOH A 14 586 580 HOH HOH . 
G 4 HOH A 15 587 581 HOH HOH . 
G 4 HOH A 16 588 582 HOH HOH . 
G 4 HOH A 17 589 583 HOH HOH . 
G 4 HOH A 18 590 584 HOH HOH . 
G 4 HOH A 19 591 585 HOH HOH . 
G 4 HOH A 20 592 586 HOH HOH . 
G 4 HOH A 21 593 588 HOH HOH . 
G 4 HOH A 22 594 589 HOH HOH . 
G 4 HOH A 23 595 590 HOH HOH . 
G 4 HOH A 24 596 591 HOH HOH . 
G 4 HOH A 25 597 592 HOH HOH . 
G 4 HOH A 26 598 593 HOH HOH . 
G 4 HOH A 27 599 594 HOH HOH . 
G 4 HOH A 28 600 595 HOH HOH . 
G 4 HOH A 29 601 596 HOH HOH . 
G 4 HOH A 30 602 597 HOH HOH . 
G 4 HOH A 31 603 598 HOH HOH . 
G 4 HOH A 32 604 599 HOH HOH . 
G 4 HOH A 33 605 600 HOH HOH . 
G 4 HOH A 34 606 601 HOH HOH . 
G 4 HOH A 35 607 602 HOH HOH . 
G 4 HOH A 36 608 603 HOH HOH . 
G 4 HOH A 37 609 604 HOH HOH . 
G 4 HOH A 38 610 605 HOH HOH . 
G 4 HOH A 39 611 606 HOH HOH . 
G 4 HOH A 40 612 607 HOH HOH . 
G 4 HOH A 41 613 608 HOH HOH . 
G 4 HOH A 42 614 609 HOH HOH . 
G 4 HOH A 43 615 610 HOH HOH . 
G 4 HOH A 44 616 611 HOH HOH . 
G 4 HOH A 45 617 612 HOH HOH . 
G 4 HOH A 46 618 613 HOH HOH . 
G 4 HOH A 47 619 614 HOH HOH . 
G 4 HOH A 48 620 615 HOH HOH . 
G 4 HOH A 49 621 616 HOH HOH . 
G 4 HOH A 50 622 617 HOH HOH . 
G 4 HOH A 51 623 618 HOH HOH . 
G 4 HOH A 52 624 619 HOH HOH . 
G 4 HOH A 53 625 620 HOH HOH . 
G 4 HOH A 54 626 621 HOH HOH . 
G 4 HOH A 55 627 622 HOH HOH . 
G 4 HOH A 56 628 623 HOH HOH . 
G 4 HOH A 57 629 624 HOH HOH . 
G 4 HOH A 58 630 626 HOH HOH . 
G 4 HOH A 59 631 627 HOH HOH . 
G 4 HOH A 60 632 628 HOH HOH . 
G 4 HOH A 61 633 629 HOH HOH . 
G 4 HOH A 62 634 630 HOH HOH . 
G 4 HOH A 63 635 631 HOH HOH . 
G 4 HOH A 64 636 632 HOH HOH . 
G 4 HOH A 65 637 633 HOH HOH . 
G 4 HOH A 66 638 634 HOH HOH . 
G 4 HOH A 67 639 635 HOH HOH . 
G 4 HOH A 68 640 636 HOH HOH . 
G 4 HOH A 69 641 637 HOH HOH . 
G 4 HOH A 70 642 638 HOH HOH . 
G 4 HOH A 71 643 639 HOH HOH . 
G 4 HOH A 72 644 640 HOH HOH . 
G 4 HOH A 73 645 641 HOH HOH . 
G 4 HOH A 74 646 643 HOH HOH . 
G 4 HOH A 75 647 645 HOH HOH . 
G 4 HOH A 76 648 646 HOH HOH . 
G 4 HOH A 77 649 647 HOH HOH . 
G 4 HOH A 78 650 648 HOH HOH . 
G 4 HOH A 79 651 593 HOH HOH . 
H 4 HOH B 1 573 569 HOH HOH . 
H 4 HOH B 2 574 570 HOH HOH . 
H 4 HOH B 3 575 572 HOH HOH . 
H 4 HOH B 4 576 573 HOH HOH . 
H 4 HOH B 5 577 575 HOH HOH . 
H 4 HOH B 6 578 576 HOH HOH . 
H 4 HOH B 7 579 578 HOH HOH . 
H 4 HOH B 8 580 579 HOH HOH . 
H 4 HOH B 9 581 581 HOH HOH . 
H 4 HOH B 10 582 582 HOH HOH . 
H 4 HOH B 11 583 583 HOH HOH . 
H 4 HOH B 12 584 584 HOH HOH . 
H 4 HOH B 13 585 585 HOH HOH . 
H 4 HOH B 14 586 586 HOH HOH . 
H 4 HOH B 15 587 587 HOH HOH . 
H 4 HOH B 16 588 588 HOH HOH . 
H 4 HOH B 17 589 589 HOH HOH . 
H 4 HOH B 18 590 590 HOH HOH . 
H 4 HOH B 19 591 591 HOH HOH . 
H 4 HOH B 20 592 592 HOH HOH . 
H 4 HOH B 21 593 594 HOH HOH . 
H 4 HOH B 22 594 595 HOH HOH . 
H 4 HOH B 23 595 596 HOH HOH . 
H 4 HOH B 24 596 597 HOH HOH . 
H 4 HOH B 25 597 598 HOH HOH . 
H 4 HOH B 26 598 599 HOH HOH . 
H 4 HOH B 27 599 600 HOH HOH . 
H 4 HOH B 28 600 601 HOH HOH . 
H 4 HOH B 29 601 602 HOH HOH . 
H 4 HOH B 30 602 603 HOH HOH . 
H 4 HOH B 31 603 604 HOH HOH . 
H 4 HOH B 32 604 605 HOH HOH . 
H 4 HOH B 33 605 606 HOH HOH . 
H 4 HOH B 34 606 607 HOH HOH . 
H 4 HOH B 35 607 608 HOH HOH . 
H 4 HOH B 36 608 609 HOH HOH . 
H 4 HOH B 37 609 610 HOH HOH . 
H 4 HOH B 38 610 611 HOH HOH . 
H 4 HOH B 39 611 612 HOH HOH . 
H 4 HOH B 40 612 613 HOH HOH . 
H 4 HOH B 41 613 614 HOH HOH . 
H 4 HOH B 42 614 615 HOH HOH . 
H 4 HOH B 43 615 616 HOH HOH . 
H 4 HOH B 44 616 618 HOH HOH . 
H 4 HOH B 45 617 619 HOH HOH . 
H 4 HOH B 46 618 620 HOH HOH . 
H 4 HOH B 47 619 621 HOH HOH . 
H 4 HOH B 48 620 622 HOH HOH . 
H 4 HOH B 49 621 623 HOH HOH . 
H 4 HOH B 50 622 624 HOH HOH . 
H 4 HOH B 51 623 626 HOH HOH . 
H 4 HOH B 52 624 627 HOH HOH . 
H 4 HOH B 53 625 628 HOH HOH . 
H 4 HOH B 54 626 629 HOH HOH . 
H 4 HOH B 55 627 630 HOH HOH . 
H 4 HOH B 56 628 631 HOH HOH . 
H 4 HOH B 57 629 632 HOH HOH . 
H 4 HOH B 58 630 633 HOH HOH . 
H 4 HOH B 59 631 634 HOH HOH . 
H 4 HOH B 60 632 635 HOH HOH . 
H 4 HOH B 61 633 636 HOH HOH . 
H 4 HOH B 62 634 637 HOH HOH . 
H 4 HOH B 63 635 638 HOH HOH . 
H 4 HOH B 64 636 639 HOH HOH . 
H 4 HOH B 65 637 640 HOH HOH . 
H 4 HOH B 66 638 641 HOH HOH . 
H 4 HOH B 67 639 642 HOH HOH . 
H 4 HOH B 68 640 643 HOH HOH . 
H 4 HOH B 69 641 644 HOH HOH . 
H 4 HOH B 70 642 645 HOH HOH . 
H 4 HOH B 71 643 646 HOH HOH . 
H 4 HOH B 72 644 647 HOH HOH . 
H 4 HOH B 73 645 648 HOH HOH . 
H 4 HOH B 74 646 649 HOH HOH . 
H 4 HOH B 75 647 650 HOH HOH . 
H 4 HOH B 76 648 651 HOH HOH . 
H 4 HOH B 77 649 652 HOH HOH . 
H 4 HOH B 78 650 653 HOH HOH . 
H 4 HOH B 79 651 654 HOH HOH . 
H 4 HOH B 80 652 655 HOH HOH . 
H 4 HOH B 81 653 656 HOH HOH . 
H 4 HOH B 82 654 657 HOH HOH . 
H 4 HOH B 83 655 658 HOH HOH . 
H 4 HOH B 84 656 659 HOH HOH . 
H 4 HOH B 85 657 660 HOH HOH . 
H 4 HOH B 86 658 661 HOH HOH . 
H 4 HOH B 87 659 662 HOH HOH . 
H 4 HOH B 88 660 663 HOH HOH . 
H 4 HOH B 89 661 664 HOH HOH . 
H 4 HOH B 90 662 665 HOH HOH . 
H 4 HOH B 91 663 666 HOH HOH . 
H 4 HOH B 92 664 667 HOH HOH . 
H 4 HOH B 93 665 668 HOH HOH . 
H 4 HOH B 94 666 669 HOH HOH . 
H 4 HOH B 95 667 670 HOH HOH . 
H 4 HOH B 96 668 671 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -40.752 
_atom_site.Cartn_y               29.781 
_atom_site.Cartn_z               0.424 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        56.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           571 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#