data_3D7O # _model_server_result.job_id XV2ki2BPkdUnmhq49galRw _model_server_result.datetime_utc '2024-11-16 11:49:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":142}' # _entry.id 3D7O # _exptl.entry_id 3D7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D7O _cell.length_a 53.538 _cell.length_b 53.538 _cell.length_c 191.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc2 C O2 NO2 . A NO2 142 1_555 D FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc4 F O2 NO2 . B NO2 147 1_555 G FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 313 n n N O2 NO2 sing 314 n n # _atom_sites.entry_id 3D7O _atom_sites.fract_transf_matrix[1][1] 0.018678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NO2 A 1 142 1 NO2 NO2 . D 4 HEM A 1 143 142 HEM HEM . E 5 MBN A 1 144 3 MBN MBN . F 3 NO2 B 1 147 2 NO2 NO2 . G 4 HEM B 1 148 147 HEM HEM . H 6 HOH A 1 145 1 HOH HOH . H 6 HOH A 2 146 3 HOH HOH . H 6 HOH A 3 147 4 HOH HOH . H 6 HOH A 4 148 6 HOH HOH . H 6 HOH A 5 149 7 HOH HOH . H 6 HOH A 6 150 8 HOH HOH . H 6 HOH A 7 151 9 HOH HOH . H 6 HOH A 8 152 11 HOH HOH . H 6 HOH A 9 153 13 HOH HOH . H 6 HOH A 10 154 15 HOH HOH . H 6 HOH A 11 155 16 HOH HOH . H 6 HOH A 12 156 17 HOH HOH . H 6 HOH A 13 157 18 HOH HOH . H 6 HOH A 14 158 19 HOH HOH . H 6 HOH A 15 159 21 HOH HOH . H 6 HOH A 16 160 22 HOH HOH . H 6 HOH A 17 161 23 HOH HOH . H 6 HOH A 18 162 26 HOH HOH . H 6 HOH A 19 163 29 HOH HOH . H 6 HOH A 20 164 30 HOH HOH . H 6 HOH A 21 165 31 HOH HOH . H 6 HOH A 22 166 34 HOH HOH . H 6 HOH A 23 167 35 HOH HOH . H 6 HOH A 24 168 36 HOH HOH . H 6 HOH A 25 169 37 HOH HOH . H 6 HOH A 26 170 38 HOH HOH . H 6 HOH A 27 171 39 HOH HOH . H 6 HOH A 28 172 40 HOH HOH . H 6 HOH A 29 173 41 HOH HOH . H 6 HOH A 30 174 42 HOH HOH . H 6 HOH A 31 175 43 HOH HOH . H 6 HOH A 32 176 44 HOH HOH . H 6 HOH A 33 177 47 HOH HOH . H 6 HOH A 34 178 48 HOH HOH . H 6 HOH A 35 179 49 HOH HOH . H 6 HOH A 36 180 52 HOH HOH . H 6 HOH A 37 181 54 HOH HOH . H 6 HOH A 38 182 55 HOH HOH . H 6 HOH A 39 183 57 HOH HOH . H 6 HOH A 40 184 58 HOH HOH . H 6 HOH A 41 185 62 HOH HOH . H 6 HOH A 42 186 63 HOH HOH . H 6 HOH A 43 187 64 HOH HOH . H 6 HOH A 44 188 65 HOH HOH . H 6 HOH A 45 189 66 HOH HOH . H 6 HOH A 46 190 67 HOH HOH . H 6 HOH A 47 191 70 HOH HOH . H 6 HOH A 48 192 72 HOH HOH . H 6 HOH A 49 193 73 HOH HOH . H 6 HOH A 50 194 76 HOH HOH . H 6 HOH A 51 195 77 HOH HOH . H 6 HOH A 52 196 80 HOH HOH . H 6 HOH A 53 197 81 HOH HOH . H 6 HOH A 54 198 82 HOH HOH . H 6 HOH A 55 199 83 HOH HOH . H 6 HOH A 56 200 87 HOH HOH . H 6 HOH A 57 201 92 HOH HOH . H 6 HOH A 58 202 95 HOH HOH . H 6 HOH A 59 203 100 HOH HOH . H 6 HOH A 60 204 101 HOH HOH . H 6 HOH A 61 205 104 HOH HOH . H 6 HOH A 62 206 105 HOH HOH . H 6 HOH A 63 207 106 HOH HOH . H 6 HOH A 64 208 108 HOH HOH . H 6 HOH A 65 209 112 HOH HOH . H 6 HOH A 66 210 114 HOH HOH . H 6 HOH A 67 211 116 HOH HOH . H 6 HOH A 68 212 120 HOH HOH . H 6 HOH A 69 213 121 HOH HOH . H 6 HOH A 70 214 123 HOH HOH . H 6 HOH A 71 215 127 HOH HOH . H 6 HOH A 72 216 128 HOH HOH . H 6 HOH A 73 217 129 HOH HOH . H 6 HOH A 74 218 131 HOH HOH . H 6 HOH A 75 219 136 HOH HOH . H 6 HOH A 76 220 139 HOH HOH . H 6 HOH A 77 221 141 HOH HOH . H 6 HOH A 78 222 142 HOH HOH . H 6 HOH A 79 223 144 HOH HOH . H 6 HOH A 80 224 145 HOH HOH . H 6 HOH A 81 225 147 HOH HOH . H 6 HOH A 82 226 151 HOH HOH . I 6 HOH B 1 149 2 HOH HOH . I 6 HOH B 2 150 5 HOH HOH . I 6 HOH B 3 151 10 HOH HOH . I 6 HOH B 4 152 12 HOH HOH . I 6 HOH B 5 153 14 HOH HOH . I 6 HOH B 6 154 20 HOH HOH . I 6 HOH B 7 155 24 HOH HOH . I 6 HOH B 8 156 25 HOH HOH . I 6 HOH B 9 157 27 HOH HOH . I 6 HOH B 10 158 28 HOH HOH . I 6 HOH B 11 159 32 HOH HOH . I 6 HOH B 12 160 33 HOH HOH . I 6 HOH B 13 161 45 HOH HOH . I 6 HOH B 14 162 46 HOH HOH . I 6 HOH B 15 163 50 HOH HOH . I 6 HOH B 16 164 51 HOH HOH . I 6 HOH B 17 165 53 HOH HOH . I 6 HOH B 18 166 56 HOH HOH . I 6 HOH B 19 167 59 HOH HOH . I 6 HOH B 20 168 60 HOH HOH . I 6 HOH B 21 169 61 HOH HOH . I 6 HOH B 22 170 68 HOH HOH . I 6 HOH B 23 171 69 HOH HOH . I 6 HOH B 24 172 71 HOH HOH . I 6 HOH B 25 173 74 HOH HOH . I 6 HOH B 26 174 75 HOH HOH . I 6 HOH B 27 175 78 HOH HOH . I 6 HOH B 28 176 79 HOH HOH . I 6 HOH B 29 177 84 HOH HOH . I 6 HOH B 30 178 85 HOH HOH . I 6 HOH B 31 179 86 HOH HOH . I 6 HOH B 32 180 88 HOH HOH . I 6 HOH B 33 181 89 HOH HOH . I 6 HOH B 34 182 90 HOH HOH . I 6 HOH B 35 183 91 HOH HOH . I 6 HOH B 36 184 93 HOH HOH . I 6 HOH B 37 185 94 HOH HOH . I 6 HOH B 38 186 96 HOH HOH . I 6 HOH B 39 187 97 HOH HOH . I 6 HOH B 40 188 98 HOH HOH . I 6 HOH B 41 189 99 HOH HOH . I 6 HOH B 42 190 102 HOH HOH . I 6 HOH B 43 191 103 HOH HOH . I 6 HOH B 44 192 107 HOH HOH . I 6 HOH B 45 193 109 HOH HOH . I 6 HOH B 46 194 110 HOH HOH . I 6 HOH B 47 195 111 HOH HOH . I 6 HOH B 48 196 113 HOH HOH . I 6 HOH B 49 197 115 HOH HOH . I 6 HOH B 50 198 117 HOH HOH . I 6 HOH B 51 199 118 HOH HOH . I 6 HOH B 52 200 119 HOH HOH . I 6 HOH B 53 201 122 HOH HOH . I 6 HOH B 54 202 124 HOH HOH . I 6 HOH B 55 203 125 HOH HOH . I 6 HOH B 56 204 126 HOH HOH . I 6 HOH B 57 205 130 HOH HOH . I 6 HOH B 58 206 132 HOH HOH . I 6 HOH B 59 207 133 HOH HOH . I 6 HOH B 60 208 134 HOH HOH . I 6 HOH B 61 209 135 HOH HOH . I 6 HOH B 62 210 137 HOH HOH . I 6 HOH B 63 211 138 HOH HOH . I 6 HOH B 64 212 140 HOH HOH . I 6 HOH B 65 213 143 HOH HOH . I 6 HOH B 66 214 146 HOH HOH . I 6 HOH B 67 215 148 HOH HOH . I 6 HOH B 68 216 149 HOH HOH . I 6 HOH B 69 217 150 HOH HOH . I 6 HOH B 70 218 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . C 3 11.06 2.352 16.313 1 21.23 ? N NO2 142 A 1 HETATM 2 O O1 NO2 . . . C 3 10.451 2.035 17.354 1 23.56 ? O1 NO2 142 A 1 HETATM 3 O O2 NO2 . . . C 3 12.317 2.229 16.494 1 18.38 ? O2 NO2 142 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #