data_3D7S # _model_server_result.job_id woJmqev3LvkN5x742YG4DQ _model_server_result.datetime_utc '2024-11-26 01:38:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":313}' # _entry.id 3D7S # _exptl.entry_id 3D7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 2.1.3.2 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3D7S _cell.length_a 129.68 _cell.length_b 129.68 _cell.length_c 198.58 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 109 B CYS 109 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SG CYS 114 B CYS 114 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 B SG CYS 138 B CYS 138 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 109 D CYS 109 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf5 D SG CYS 114 D CYS 114 1_555 D SG CYS 141 D CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf6 D SG CYS 138 D CYS 138 1_555 D SG CYS 141 D CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc1 B SG CYS 114 B CYS 114 1_555 E ZN ZN . B ZN 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc2 B SG CYS 138 B CYS 138 1_555 E ZN ZN . B ZN 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc3 B SG CYS 141 B CYS 141 1_555 E ZN ZN . B ZN 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc4 D SG CYS 109 D CYS 109 1_555 F ZN ZN . D ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc5 D SG CYS 114 D CYS 114 1_555 F ZN ZN . D ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3D7S _atom_sites.fract_transf_matrix[1][1] 0.007711 _atom_sites.fract_transf_matrix[1][2] 0.004452 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 313 313 ZN ZN . F 3 ZN D 1 314 314 ZN ZN . G 4 HOH A 1 311 1 HOH HOH . G 4 HOH A 2 312 3 HOH HOH . G 4 HOH A 3 313 6 HOH HOH . G 4 HOH A 4 314 9 HOH HOH . G 4 HOH A 5 315 10 HOH HOH . G 4 HOH A 6 316 11 HOH HOH . G 4 HOH A 7 317 14 HOH HOH . G 4 HOH A 8 318 15 HOH HOH . G 4 HOH A 9 319 17 HOH HOH . G 4 HOH A 10 320 21 HOH HOH . G 4 HOH A 11 321 24 HOH HOH . G 4 HOH A 12 322 30 HOH HOH . G 4 HOH A 13 323 33 HOH HOH . G 4 HOH A 14 324 34 HOH HOH . G 4 HOH A 15 325 38 HOH HOH . G 4 HOH A 16 326 41 HOH HOH . G 4 HOH A 17 327 43 HOH HOH . G 4 HOH A 18 328 82 HOH HOH . G 4 HOH A 19 329 83 HOH HOH . G 4 HOH A 20 330 85 HOH HOH . G 4 HOH A 21 331 107 HOH HOH . G 4 HOH A 22 332 110 HOH HOH . G 4 HOH A 23 333 112 HOH HOH . G 4 HOH A 24 334 128 HOH HOH . G 4 HOH A 25 335 144 HOH HOH . G 4 HOH A 26 336 157 HOH HOH . G 4 HOH A 27 337 176 HOH HOH . G 4 HOH A 28 338 179 HOH HOH . G 4 HOH A 29 339 180 HOH HOH . G 4 HOH A 30 340 185 HOH HOH . G 4 HOH A 31 341 189 HOH HOH . G 4 HOH A 32 349 206 HOH HOH . H 4 HOH B 1 314 18 HOH HOH . H 4 HOH B 2 315 27 HOH HOH . H 4 HOH B 3 316 37 HOH HOH . H 4 HOH B 4 317 44 HOH HOH . H 4 HOH B 5 318 48 HOH HOH . H 4 HOH B 6 319 56 HOH HOH . H 4 HOH B 7 320 74 HOH HOH . H 4 HOH B 8 321 87 HOH HOH . H 4 HOH B 9 322 92 HOH HOH . H 4 HOH B 10 323 95 HOH HOH . H 4 HOH B 11 324 96 HOH HOH . H 4 HOH B 12 325 98 HOH HOH . H 4 HOH B 13 326 116 HOH HOH . H 4 HOH B 14 327 126 HOH HOH . H 4 HOH B 15 328 129 HOH HOH . H 4 HOH B 16 329 130 HOH HOH . H 4 HOH B 17 330 133 HOH HOH . H 4 HOH B 18 331 142 HOH HOH . H 4 HOH B 19 332 154 HOH HOH . H 4 HOH B 20 333 159 HOH HOH . H 4 HOH B 21 334 161 HOH HOH . H 4 HOH B 22 335 168 HOH HOH . H 4 HOH B 23 336 181 HOH HOH . H 4 HOH B 24 337 194 HOH HOH . H 4 HOH B 25 338 201 HOH HOH . H 4 HOH B 26 339 202 HOH HOH . H 4 HOH B 27 340 207 HOH HOH . H 4 HOH B 28 352 213 HOH HOH . I 4 HOH C 1 311 2 HOH HOH . I 4 HOH C 2 312 5 HOH HOH . I 4 HOH C 3 313 7 HOH HOH . I 4 HOH C 4 314 16 HOH HOH . I 4 HOH C 5 315 19 HOH HOH . I 4 HOH C 6 316 20 HOH HOH . I 4 HOH C 7 317 22 HOH HOH . I 4 HOH C 8 318 26 HOH HOH . I 4 HOH C 9 319 35 HOH HOH . I 4 HOH C 10 320 39 HOH HOH . I 4 HOH C 11 321 42 HOH HOH . I 4 HOH C 12 322 54 HOH HOH . I 4 HOH C 13 323 59 HOH HOH . I 4 HOH C 14 324 67 HOH HOH . I 4 HOH C 15 325 72 HOH HOH . I 4 HOH C 16 326 79 HOH HOH . I 4 HOH C 17 327 84 HOH HOH . I 4 HOH C 18 328 89 HOH HOH . I 4 HOH C 19 329 100 HOH HOH . I 4 HOH C 20 330 101 HOH HOH . I 4 HOH C 21 331 104 HOH HOH . I 4 HOH C 22 332 106 HOH HOH . I 4 HOH C 23 333 109 HOH HOH . I 4 HOH C 24 334 115 HOH HOH . I 4 HOH C 25 335 119 HOH HOH . I 4 HOH C 26 336 138 HOH HOH . I 4 HOH C 27 337 145 HOH HOH . I 4 HOH C 28 338 146 HOH HOH . I 4 HOH C 29 339 155 HOH HOH . I 4 HOH C 30 340 158 HOH HOH . I 4 HOH C 31 341 160 HOH HOH . I 4 HOH C 32 342 171 HOH HOH . I 4 HOH C 33 343 182 HOH HOH . I 4 HOH C 34 344 186 HOH HOH . I 4 HOH C 35 345 195 HOH HOH . I 4 HOH C 36 346 200 HOH HOH . I 4 HOH C 37 347 203 HOH HOH . I 4 HOH C 38 348 205 HOH HOH . I 4 HOH C 39 350 211 HOH HOH . I 4 HOH C 40 351 212 HOH HOH . J 4 HOH D 1 315 4 HOH HOH . J 4 HOH D 2 316 8 HOH HOH . J 4 HOH D 3 317 12 HOH HOH . J 4 HOH D 4 318 13 HOH HOH . J 4 HOH D 5 319 23 HOH HOH . J 4 HOH D 6 320 29 HOH HOH . J 4 HOH D 7 321 32 HOH HOH . J 4 HOH D 8 322 40 HOH HOH . J 4 HOH D 9 323 47 HOH HOH . J 4 HOH D 10 324 49 HOH HOH . J 4 HOH D 11 325 55 HOH HOH . J 4 HOH D 12 326 58 HOH HOH . J 4 HOH D 13 327 61 HOH HOH . J 4 HOH D 14 328 62 HOH HOH . J 4 HOH D 15 329 63 HOH HOH . J 4 HOH D 16 330 70 HOH HOH . J 4 HOH D 17 331 75 HOH HOH . J 4 HOH D 18 332 76 HOH HOH . J 4 HOH D 19 333 88 HOH HOH . J 4 HOH D 20 334 111 HOH HOH . J 4 HOH D 21 335 118 HOH HOH . J 4 HOH D 22 336 127 HOH HOH . J 4 HOH D 23 337 134 HOH HOH . J 4 HOH D 24 338 135 HOH HOH . J 4 HOH D 25 339 139 HOH HOH . J 4 HOH D 26 340 143 HOH HOH . J 4 HOH D 27 341 147 HOH HOH . J 4 HOH D 28 342 153 HOH HOH . J 4 HOH D 29 343 163 HOH HOH . J 4 HOH D 30 344 164 HOH HOH . J 4 HOH D 31 345 175 HOH HOH . J 4 HOH D 32 346 178 HOH HOH . J 4 HOH D 33 347 188 HOH HOH . J 4 HOH D 34 348 190 HOH HOH . J 4 HOH D 35 349 191 HOH HOH . J 4 HOH D 36 350 193 HOH HOH . J 4 HOH D 37 351 204 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.787 _atom_site.Cartn_y -30.319 _atom_site.Cartn_z 13.261 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 91.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 313 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #