data_3D80 # _model_server_result.job_id 9XAk6p6O3wLok7n0uEMLkA _model_server_result.datetime_utc '2024-11-20 06:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":189}' # _entry.id 3D80 # _exptl.entry_id 3D80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.23 _cell.angle_gamma 90 _cell.entry_id 3D80 _cell.length_a 41.482 _cell.length_b 61.3 _cell.length_c 43.589 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3D80 _atom_sites.fract_transf_matrix[1][1] 0.024107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012403 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 187 187 NDP NDP . C 3 Q22 A 1 188 188 Q22 Q22 . D 4 GOL A 1 189 1 GOL GOL . E 4 GOL A 1 190 2 GOL GOL . F 4 GOL A 1 191 3 GOL GOL . G 5 HOH A 1 266 266 HOH HOH . G 5 HOH A 2 267 267 HOH HOH . G 5 HOH A 3 268 199 HOH HOH . G 5 HOH A 4 269 221 HOH HOH . G 5 HOH A 5 270 1 HOH HOH . G 5 HOH A 6 271 2 HOH HOH . G 5 HOH A 7 272 3 HOH HOH . G 5 HOH A 8 273 4 HOH HOH . G 5 HOH A 9 274 5 HOH HOH . G 5 HOH A 10 275 6 HOH HOH . G 5 HOH A 11 276 7 HOH HOH . G 5 HOH A 12 277 8 HOH HOH . G 5 HOH A 13 278 9 HOH HOH . G 5 HOH A 14 279 10 HOH HOH . G 5 HOH A 15 280 11 HOH HOH . G 5 HOH A 16 281 12 HOH HOH . G 5 HOH A 17 282 13 HOH HOH . G 5 HOH A 18 283 14 HOH HOH . G 5 HOH A 19 284 15 HOH HOH . G 5 HOH A 20 285 16 HOH HOH . G 5 HOH A 21 286 17 HOH HOH . G 5 HOH A 22 287 18 HOH HOH . G 5 HOH A 23 288 19 HOH HOH . G 5 HOH A 24 289 20 HOH HOH . G 5 HOH A 25 290 21 HOH HOH . G 5 HOH A 26 291 22 HOH HOH . G 5 HOH A 27 292 23 HOH HOH . G 5 HOH A 28 293 24 HOH HOH . G 5 HOH A 29 294 25 HOH HOH . G 5 HOH A 30 295 26 HOH HOH . G 5 HOH A 31 296 27 HOH HOH . G 5 HOH A 32 297 28 HOH HOH . G 5 HOH A 33 298 29 HOH HOH . G 5 HOH A 34 299 30 HOH HOH . G 5 HOH A 35 300 31 HOH HOH . G 5 HOH A 36 301 32 HOH HOH . G 5 HOH A 37 302 33 HOH HOH . G 5 HOH A 38 303 34 HOH HOH . G 5 HOH A 39 304 35 HOH HOH . G 5 HOH A 40 305 36 HOH HOH . G 5 HOH A 41 306 37 HOH HOH . G 5 HOH A 42 307 38 HOH HOH . G 5 HOH A 43 308 39 HOH HOH . G 5 HOH A 44 309 40 HOH HOH . G 5 HOH A 45 310 41 HOH HOH . G 5 HOH A 46 311 42 HOH HOH . G 5 HOH A 47 312 43 HOH HOH . G 5 HOH A 48 313 44 HOH HOH . G 5 HOH A 49 314 45 HOH HOH . G 5 HOH A 50 315 46 HOH HOH . G 5 HOH A 51 316 47 HOH HOH . G 5 HOH A 52 317 48 HOH HOH . G 5 HOH A 53 318 49 HOH HOH . G 5 HOH A 54 319 50 HOH HOH . G 5 HOH A 55 320 51 HOH HOH . G 5 HOH A 56 321 52 HOH HOH . G 5 HOH A 57 322 53 HOH HOH . G 5 HOH A 58 323 54 HOH HOH . G 5 HOH A 59 324 55 HOH HOH . G 5 HOH A 60 325 56 HOH HOH . G 5 HOH A 61 326 57 HOH HOH . G 5 HOH A 62 327 58 HOH HOH . G 5 HOH A 63 328 59 HOH HOH . G 5 HOH A 64 329 60 HOH HOH . G 5 HOH A 65 330 61 HOH HOH . G 5 HOH A 66 331 62 HOH HOH . G 5 HOH A 67 332 63 HOH HOH . G 5 HOH A 68 333 64 HOH HOH . G 5 HOH A 69 334 65 HOH HOH . G 5 HOH A 70 335 66 HOH HOH . G 5 HOH A 71 336 67 HOH HOH . G 5 HOH A 72 337 68 HOH HOH . G 5 HOH A 73 338 69 HOH HOH . G 5 HOH A 74 339 70 HOH HOH . G 5 HOH A 75 340 72 HOH HOH . G 5 HOH A 76 341 73 HOH HOH . G 5 HOH A 77 342 74 HOH HOH . G 5 HOH A 78 343 76 HOH HOH . G 5 HOH A 79 344 77 HOH HOH . G 5 HOH A 80 345 78 HOH HOH . G 5 HOH A 81 346 79 HOH HOH . G 5 HOH A 82 347 80 HOH HOH . G 5 HOH A 83 348 81 HOH HOH . G 5 HOH A 84 349 82 HOH HOH . G 5 HOH A 85 350 83 HOH HOH . G 5 HOH A 86 351 84 HOH HOH . G 5 HOH A 87 352 85 HOH HOH . G 5 HOH A 88 353 86 HOH HOH . G 5 HOH A 89 354 87 HOH HOH . G 5 HOH A 90 355 88 HOH HOH . G 5 HOH A 91 356 89 HOH HOH . G 5 HOH A 92 357 90 HOH HOH . G 5 HOH A 93 358 91 HOH HOH . G 5 HOH A 94 359 92 HOH HOH . G 5 HOH A 95 360 93 HOH HOH . G 5 HOH A 96 361 94 HOH HOH . G 5 HOH A 97 362 95 HOH HOH . G 5 HOH A 98 363 96 HOH HOH . G 5 HOH A 99 364 97 HOH HOH . G 5 HOH A 100 365 98 HOH HOH . G 5 HOH A 101 366 99 HOH HOH . G 5 HOH A 102 367 100 HOH HOH . G 5 HOH A 103 368 101 HOH HOH . G 5 HOH A 104 369 102 HOH HOH . G 5 HOH A 105 370 103 HOH HOH . G 5 HOH A 106 371 104 HOH HOH . G 5 HOH A 107 372 105 HOH HOH . G 5 HOH A 108 373 106 HOH HOH . G 5 HOH A 109 374 107 HOH HOH . G 5 HOH A 110 375 108 HOH HOH . G 5 HOH A 111 376 109 HOH HOH . G 5 HOH A 112 377 111 HOH HOH . G 5 HOH A 113 378 112 HOH HOH . G 5 HOH A 114 379 113 HOH HOH . G 5 HOH A 115 380 114 HOH HOH . G 5 HOH A 116 381 115 HOH HOH . G 5 HOH A 117 382 116 HOH HOH . G 5 HOH A 118 383 117 HOH HOH . G 5 HOH A 119 384 118 HOH HOH . G 5 HOH A 120 385 119 HOH HOH . G 5 HOH A 121 386 120 HOH HOH . G 5 HOH A 122 387 121 HOH HOH . G 5 HOH A 123 388 122 HOH HOH . G 5 HOH A 124 389 123 HOH HOH . G 5 HOH A 125 390 124 HOH HOH . G 5 HOH A 126 391 125 HOH HOH . G 5 HOH A 127 392 126 HOH HOH . G 5 HOH A 128 393 127 HOH HOH . G 5 HOH A 129 394 128 HOH HOH . G 5 HOH A 130 395 129 HOH HOH . G 5 HOH A 131 396 130 HOH HOH . G 5 HOH A 132 397 131 HOH HOH . G 5 HOH A 133 398 132 HOH HOH . G 5 HOH A 134 399 133 HOH HOH . G 5 HOH A 135 400 134 HOH HOH . G 5 HOH A 136 401 135 HOH HOH . G 5 HOH A 137 402 136 HOH HOH . G 5 HOH A 138 403 137 HOH HOH . G 5 HOH A 139 404 138 HOH HOH . G 5 HOH A 140 405 139 HOH HOH . G 5 HOH A 141 406 140 HOH HOH . G 5 HOH A 142 407 141 HOH HOH . G 5 HOH A 143 408 142 HOH HOH . G 5 HOH A 144 409 143 HOH HOH . G 5 HOH A 145 410 144 HOH HOH . G 5 HOH A 146 411 145 HOH HOH . G 5 HOH A 147 412 146 HOH HOH . G 5 HOH A 148 413 147 HOH HOH . G 5 HOH A 149 414 148 HOH HOH . G 5 HOH A 150 415 149 HOH HOH . G 5 HOH A 151 416 150 HOH HOH . G 5 HOH A 152 417 151 HOH HOH . G 5 HOH A 153 418 152 HOH HOH . G 5 HOH A 154 419 153 HOH HOH . G 5 HOH A 155 420 154 HOH HOH . G 5 HOH A 156 421 156 HOH HOH . G 5 HOH A 157 422 157 HOH HOH . G 5 HOH A 158 423 158 HOH HOH . G 5 HOH A 159 424 159 HOH HOH . G 5 HOH A 160 425 160 HOH HOH . G 5 HOH A 161 426 161 HOH HOH . G 5 HOH A 162 427 162 HOH HOH . G 5 HOH A 163 428 163 HOH HOH . G 5 HOH A 164 429 164 HOH HOH . G 5 HOH A 165 430 165 HOH HOH . G 5 HOH A 166 431 166 HOH HOH . G 5 HOH A 167 432 167 HOH HOH . G 5 HOH A 168 433 168 HOH HOH . G 5 HOH A 169 434 169 HOH HOH . G 5 HOH A 170 435 171 HOH HOH . G 5 HOH A 171 436 172 HOH HOH . G 5 HOH A 172 437 173 HOH HOH . G 5 HOH A 173 438 174 HOH HOH . G 5 HOH A 174 439 176 HOH HOH . G 5 HOH A 175 440 177 HOH HOH . G 5 HOH A 176 441 178 HOH HOH . G 5 HOH A 177 442 179 HOH HOH . G 5 HOH A 178 443 180 HOH HOH . G 5 HOH A 179 444 181 HOH HOH . G 5 HOH A 180 445 182 HOH HOH . G 5 HOH A 181 446 183 HOH HOH . G 5 HOH A 182 447 184 HOH HOH . G 5 HOH A 183 448 185 HOH HOH . G 5 HOH A 184 449 186 HOH HOH . G 5 HOH A 185 450 187 HOH HOH . G 5 HOH A 186 451 188 HOH HOH . G 5 HOH A 187 452 190 HOH HOH . G 5 HOH A 188 453 191 HOH HOH . G 5 HOH A 189 454 192 HOH HOH . G 5 HOH A 190 455 193 HOH HOH . G 5 HOH A 191 456 194 HOH HOH . G 5 HOH A 192 457 195 HOH HOH . G 5 HOH A 193 458 196 HOH HOH . G 5 HOH A 194 459 197 HOH HOH . G 5 HOH A 195 460 198 HOH HOH . G 5 HOH A 196 461 200 HOH HOH . G 5 HOH A 197 462 201 HOH HOH . G 5 HOH A 198 463 202 HOH HOH . G 5 HOH A 199 464 203 HOH HOH . G 5 HOH A 200 465 204 HOH HOH . G 5 HOH A 201 466 205 HOH HOH . G 5 HOH A 202 467 206 HOH HOH . G 5 HOH A 203 468 207 HOH HOH . G 5 HOH A 204 469 208 HOH HOH . G 5 HOH A 205 470 209 HOH HOH . G 5 HOH A 206 471 210 HOH HOH . G 5 HOH A 207 472 211 HOH HOH . G 5 HOH A 208 473 212 HOH HOH . G 5 HOH A 209 474 213 HOH HOH . G 5 HOH A 210 475 214 HOH HOH . G 5 HOH A 211 476 215 HOH HOH . G 5 HOH A 212 477 217 HOH HOH . G 5 HOH A 213 478 218 HOH HOH . G 5 HOH A 214 479 219 HOH HOH . G 5 HOH A 215 480 220 HOH HOH . G 5 HOH A 216 481 222 HOH HOH . G 5 HOH A 217 482 223 HOH HOH . G 5 HOH A 218 483 224 HOH HOH . G 5 HOH A 219 484 225 HOH HOH . G 5 HOH A 220 485 226 HOH HOH . G 5 HOH A 221 486 227 HOH HOH . G 5 HOH A 222 487 229 HOH HOH . G 5 HOH A 223 488 230 HOH HOH . G 5 HOH A 224 489 231 HOH HOH . G 5 HOH A 225 490 232 HOH HOH . G 5 HOH A 226 491 233 HOH HOH . G 5 HOH A 227 492 234 HOH HOH . G 5 HOH A 228 493 235 HOH HOH . G 5 HOH A 229 494 236 HOH HOH . G 5 HOH A 230 495 237 HOH HOH . G 5 HOH A 231 496 240 HOH HOH . G 5 HOH A 232 497 241 HOH HOH . G 5 HOH A 233 498 242 HOH HOH . G 5 HOH A 234 499 243 HOH HOH . G 5 HOH A 235 500 244 HOH HOH . G 5 HOH A 236 501 245 HOH HOH . G 5 HOH A 237 502 247 HOH HOH . G 5 HOH A 238 503 248 HOH HOH . G 5 HOH A 239 504 250 HOH HOH . G 5 HOH A 240 505 252 HOH HOH . G 5 HOH A 241 506 254 HOH HOH . G 5 HOH A 242 507 256 HOH HOH . G 5 HOH A 243 508 258 HOH HOH . G 5 HOH A 244 509 259 HOH HOH . G 5 HOH A 245 510 260 HOH HOH . G 5 HOH A 246 511 261 HOH HOH . G 5 HOH A 247 512 262 HOH HOH . G 5 HOH A 248 513 7 HOH HOH . G 5 HOH A 249 514 10 HOH HOH . G 5 HOH A 250 515 14 HOH HOH . G 5 HOH A 251 516 16 HOH HOH . G 5 HOH A 252 517 19 HOH HOH . G 5 HOH A 253 518 24 HOH HOH . G 5 HOH A 254 519 38 HOH HOH . G 5 HOH A 255 520 51 HOH HOH . G 5 HOH A 256 521 68 HOH HOH . G 5 HOH A 257 522 96 HOH HOH . G 5 HOH A 258 523 152 HOH HOH . G 5 HOH A 259 524 187 HOH HOH . G 5 HOH A 260 525 189 HOH HOH . G 5 HOH A 261 526 195 HOH HOH . G 5 HOH A 262 527 199 HOH HOH . G 5 HOH A 263 528 205 HOH HOH . G 5 HOH A 264 529 213 HOH HOH . G 5 HOH A 265 530 216 HOH HOH . G 5 HOH A 266 531 4 HOH HOH . G 5 HOH A 267 532 24 HOH HOH . G 5 HOH A 268 533 108 HOH HOH . G 5 HOH A 269 534 175 HOH HOH . G 5 HOH A 270 535 184 HOH HOH . G 5 HOH A 271 536 185 HOH HOH . G 5 HOH A 272 537 187 HOH HOH . G 5 HOH A 273 538 190 HOH HOH . G 5 HOH A 274 539 195 HOH HOH . G 5 HOH A 275 540 25 HOH HOH . G 5 HOH A 276 541 42 HOH HOH . G 5 HOH A 277 542 56 HOH HOH . G 5 HOH A 278 543 91 HOH HOH . G 5 HOH A 279 544 94 HOH HOH . G 5 HOH A 280 545 131 HOH HOH . G 5 HOH A 281 546 181 HOH HOH . G 5 HOH A 282 547 187 HOH HOH . G 5 HOH A 283 548 188 HOH HOH . G 5 HOH A 284 549 194 HOH HOH . G 5 HOH A 285 550 17 HOH HOH . G 5 HOH A 286 551 23 HOH HOH . G 5 HOH A 287 552 42 HOH HOH . G 5 HOH A 288 553 52 HOH HOH . G 5 HOH A 289 554 53 HOH HOH . G 5 HOH A 290 555 62 HOH HOH . G 5 HOH A 291 556 69 HOH HOH . G 5 HOH A 292 557 81 HOH HOH . G 5 HOH A 293 558 107 HOH HOH . G 5 HOH A 294 559 138 HOH HOH . G 5 HOH A 295 560 162 HOH HOH . G 5 HOH A 296 561 174 HOH HOH . G 5 HOH A 297 562 176 HOH HOH . G 5 HOH A 298 563 182 HOH HOH . G 5 HOH A 299 564 183 HOH HOH . G 5 HOH A 300 565 7 HOH HOH . G 5 HOH A 301 566 24 HOH HOH . G 5 HOH A 302 567 32 HOH HOH . G 5 HOH A 303 568 33 HOH HOH . G 5 HOH A 304 569 36 HOH HOH . G 5 HOH A 305 570 39 HOH HOH . G 5 HOH A 306 571 43 HOH HOH . G 5 HOH A 307 572 55 HOH HOH . G 5 HOH A 308 573 58 HOH HOH . G 5 HOH A 309 574 77 HOH HOH . G 5 HOH A 310 575 79 HOH HOH . G 5 HOH A 311 576 133 HOH HOH . G 5 HOH A 312 577 141 HOH HOH . G 5 HOH A 313 578 147 HOH HOH . G 5 HOH A 314 579 198 HOH HOH . G 5 HOH A 315 580 202 HOH HOH . G 5 HOH A 316 581 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -14.151 -11.108 2.046 1 34.76 ? C1 GOL 189 A 1 HETATM 2 O O1 GOL . . . D 4 -15.417 -11.125 2.671 1 34.2 ? O1 GOL 189 A 1 HETATM 3 C C2 GOL . . . D 4 -13.197 -12.148 2.637 1 33.56 ? C2 GOL 189 A 1 HETATM 4 O O2 GOL . . . D 4 -13.875 -13.145 3.381 1 34.32 ? O2 GOL 189 A 1 HETATM 5 C C3 GOL . . . D 4 -12.443 -12.851 1.512 1 34.8 ? C3 GOL 189 A 1 HETATM 6 O O3 GOL . . . D 4 -11.844 -11.947 0.611 1 33.48 ? O3 GOL 189 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #