data_3D84
#
_model_server_result.job_id            MQUHoKsxdOmR3QLVyvjTyA 
_model_server_result.datetime_utc      '2024-11-20 06:41:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d84 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":188}' 
#
_entry.id    3D84 
#
_exptl.entry_id    3D84 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.26 
_cell.angle_gamma         90 
_cell.entry_id            3D84 
_cell.length_a            41.226 
_cell.length_b            61.172 
_cell.length_c            43.15 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D84 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3D84 
_atom_sites.fract_transf_matrix[1][1]    0.024257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.013041 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026312 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 187 1 NDP NDP . 
C 3 GOL X 1 188 1 GOL GOL . 
D 3 GOL X 1 189 1 GOL GOL . 
E 4 HOH X 1 190 1 HOH HOH . 
E 4 HOH X 2 191 2 HOH HOH . 
E 4 HOH X 3 192 3 HOH HOH . 
E 4 HOH X 4 193 4 HOH HOH . 
E 4 HOH X 5 194 5 HOH HOH . 
E 4 HOH X 6 195 7 HOH HOH . 
E 4 HOH X 7 196 8 HOH HOH . 
E 4 HOH X 8 197 9 HOH HOH . 
E 4 HOH X 9 198 10 HOH HOH . 
E 4 HOH X 10 199 11 HOH HOH . 
E 4 HOH X 11 200 12 HOH HOH . 
E 4 HOH X 12 201 13 HOH HOH . 
E 4 HOH X 13 202 14 HOH HOH . 
E 4 HOH X 14 203 15 HOH HOH . 
E 4 HOH X 15 204 16 HOH HOH . 
E 4 HOH X 16 205 17 HOH HOH . 
E 4 HOH X 17 206 18 HOH HOH . 
E 4 HOH X 18 207 19 HOH HOH . 
E 4 HOH X 19 208 20 HOH HOH . 
E 4 HOH X 20 209 21 HOH HOH . 
E 4 HOH X 21 210 22 HOH HOH . 
E 4 HOH X 22 211 23 HOH HOH . 
E 4 HOH X 23 212 24 HOH HOH . 
E 4 HOH X 24 213 25 HOH HOH . 
E 4 HOH X 25 214 26 HOH HOH . 
E 4 HOH X 26 215 27 HOH HOH . 
E 4 HOH X 27 216 28 HOH HOH . 
E 4 HOH X 28 217 29 HOH HOH . 
E 4 HOH X 29 218 30 HOH HOH . 
E 4 HOH X 30 219 31 HOH HOH . 
E 4 HOH X 31 220 32 HOH HOH . 
E 4 HOH X 32 221 33 HOH HOH . 
E 4 HOH X 33 222 34 HOH HOH . 
E 4 HOH X 34 223 35 HOH HOH . 
E 4 HOH X 35 224 36 HOH HOH . 
E 4 HOH X 36 225 37 HOH HOH . 
E 4 HOH X 37 226 38 HOH HOH . 
E 4 HOH X 38 227 39 HOH HOH . 
E 4 HOH X 39 228 40 HOH HOH . 
E 4 HOH X 40 229 41 HOH HOH . 
E 4 HOH X 41 230 42 HOH HOH . 
E 4 HOH X 42 231 43 HOH HOH . 
E 4 HOH X 43 232 44 HOH HOH . 
E 4 HOH X 44 233 45 HOH HOH . 
E 4 HOH X 45 234 46 HOH HOH . 
E 4 HOH X 46 235 47 HOH HOH . 
E 4 HOH X 47 236 48 HOH HOH . 
E 4 HOH X 48 237 50 HOH HOH . 
E 4 HOH X 49 238 51 HOH HOH . 
E 4 HOH X 50 239 53 HOH HOH . 
E 4 HOH X 51 240 54 HOH HOH . 
E 4 HOH X 52 241 55 HOH HOH . 
E 4 HOH X 53 242 57 HOH HOH . 
E 4 HOH X 54 243 58 HOH HOH . 
E 4 HOH X 55 244 59 HOH HOH . 
E 4 HOH X 56 245 60 HOH HOH . 
E 4 HOH X 57 246 61 HOH HOH . 
E 4 HOH X 58 247 62 HOH HOH . 
E 4 HOH X 59 248 63 HOH HOH . 
E 4 HOH X 60 249 64 HOH HOH . 
E 4 HOH X 61 250 65 HOH HOH . 
E 4 HOH X 62 251 66 HOH HOH . 
E 4 HOH X 63 252 67 HOH HOH . 
E 4 HOH X 64 253 68 HOH HOH . 
E 4 HOH X 65 254 69 HOH HOH . 
E 4 HOH X 66 255 70 HOH HOH . 
E 4 HOH X 67 256 71 HOH HOH . 
E 4 HOH X 68 257 72 HOH HOH . 
E 4 HOH X 69 258 73 HOH HOH . 
E 4 HOH X 70 259 74 HOH HOH . 
E 4 HOH X 71 260 75 HOH HOH . 
E 4 HOH X 72 261 76 HOH HOH . 
E 4 HOH X 73 262 77 HOH HOH . 
E 4 HOH X 74 263 78 HOH HOH . 
E 4 HOH X 75 264 79 HOH HOH . 
E 4 HOH X 76 265 80 HOH HOH . 
E 4 HOH X 77 266 81 HOH HOH . 
E 4 HOH X 78 267 82 HOH HOH . 
E 4 HOH X 79 268 83 HOH HOH . 
E 4 HOH X 80 269 84 HOH HOH . 
E 4 HOH X 81 270 85 HOH HOH . 
E 4 HOH X 82 271 86 HOH HOH . 
E 4 HOH X 83 272 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 0.339 -1.743 13.784 1 35.91 ? C1 GOL 188 X 1 
HETATM 2 O O1 GOL . . . C 3 0.94 -0.744 13.102 1 34.15 ? O1 GOL 188 X 1 
HETATM 3 C C2 GOL . . . C 3 1.063 -3.011 13.513 1 37.67 ? C2 GOL 188 X 1 
HETATM 4 O O2 GOL . . . C 3 2.292 -3.107 14.209 1 40.16 ? O2 GOL 188 X 1 
HETATM 5 C C3 GOL . . . C 3 0.193 -4.244 13.6 1 36.22 ? C3 GOL 188 X 1 
HETATM 6 O O3 GOL . . . C 3 1.114 -5.076 14.202 1 33.73 ? O3 GOL 188 X 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#