data_3D8P # _model_server_result.job_id N-D6oC_u2EKtLyYdFmulCw _model_server_result.datetime_utc '2024-11-13 12:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":166}' # _entry.id 3D8P # _exptl.entry_id 3D8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D8P _cell.length_a 135.597 _cell.length_b 135.597 _cell.length_c 103.578 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,R 1 1 B,I,J,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 77 A ASN 76 1_555 A N MSE 78 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 78 A MSE 77 1_555 A N SER 79 A SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C LYS 83 A LYS 82 1_555 A N MSE 84 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 84 A MSE 83 1_555 A N PHE 85 A PHE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C ILE 104 A ILE 103 1_555 A N MSE 105 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 105 A MSE 104 1_555 A N THR 106 A THR 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C ASN 77 B ASN 76 1_555 B N MSE 78 B MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C MSE 78 B MSE 77 1_555 B N SER 79 B SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C LYS 83 B LYS 82 1_555 B N MSE 84 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 B C MSE 84 B MSE 83 1_555 B N PHE 85 B PHE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 B C ILE 104 B ILE 103 1_555 B N MSE 105 B MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 B C MSE 105 B MSE 104 1_555 B N THR 106 B THR 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A OD1 ASP 34 A ASP 33 1_555 C CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 A OD1 ASP 36 A ASP 35 1_555 C CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 A OD1 ASP 37 A ASP 36 1_555 C CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc4 A OD2 ASP 37 A ASP 36 1_555 C CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 3D8P _atom_sites.fract_transf_matrix[1][1] 0.007375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 163 1 CA CA . D 3 ACT A 1 164 3 ACT ACT . E 3 ACT A 1 165 4 ACT ACT . F 4 EDO A 1 166 5 EDO EDO . G 4 EDO A 1 167 8 EDO EDO . H 4 EDO A 1 168 15 EDO EDO . I 3 ACT B 1 163 2 ACT ACT . J 4 EDO B 1 164 6 EDO EDO . K 4 EDO B 1 165 7 EDO EDO . L 4 EDO B 1 166 9 EDO EDO . M 4 EDO B 1 167 10 EDO EDO . N 4 EDO B 1 168 11 EDO EDO . O 4 EDO B 1 169 12 EDO EDO . P 4 EDO B 1 170 13 EDO EDO . Q 4 EDO B 1 171 14 EDO EDO . R 5 HOH A 1 169 162 HOH HOH . R 5 HOH A 2 170 165 HOH HOH . R 5 HOH A 3 171 168 HOH HOH . R 5 HOH A 4 172 172 HOH HOH . R 5 HOH A 5 173 176 HOH HOH . R 5 HOH A 6 174 177 HOH HOH . R 5 HOH A 7 175 179 HOH HOH . R 5 HOH A 8 176 182 HOH HOH . R 5 HOH A 9 177 187 HOH HOH . R 5 HOH A 10 178 188 HOH HOH . R 5 HOH A 11 179 189 HOH HOH . R 5 HOH A 12 180 190 HOH HOH . R 5 HOH A 13 181 191 HOH HOH . R 5 HOH A 14 182 192 HOH HOH . R 5 HOH A 15 183 193 HOH HOH . R 5 HOH A 16 184 196 HOH HOH . R 5 HOH A 17 185 197 HOH HOH . R 5 HOH A 18 186 198 HOH HOH . R 5 HOH A 19 187 199 HOH HOH . R 5 HOH A 20 188 202 HOH HOH . R 5 HOH A 21 189 204 HOH HOH . R 5 HOH A 22 190 205 HOH HOH . R 5 HOH A 23 191 210 HOH HOH . R 5 HOH A 24 192 211 HOH HOH . R 5 HOH A 25 193 213 HOH HOH . R 5 HOH A 26 194 217 HOH HOH . R 5 HOH A 27 195 218 HOH HOH . R 5 HOH A 28 196 221 HOH HOH . R 5 HOH A 29 197 224 HOH HOH . R 5 HOH A 30 198 225 HOH HOH . R 5 HOH A 31 199 226 HOH HOH . R 5 HOH A 32 200 227 HOH HOH . R 5 HOH A 33 201 228 HOH HOH . R 5 HOH A 34 202 229 HOH HOH . R 5 HOH A 35 203 230 HOH HOH . R 5 HOH A 36 204 231 HOH HOH . R 5 HOH A 37 205 233 HOH HOH . R 5 HOH A 38 206 234 HOH HOH . R 5 HOH A 39 207 235 HOH HOH . R 5 HOH A 40 208 236 HOH HOH . R 5 HOH A 41 209 238 HOH HOH . R 5 HOH A 42 210 239 HOH HOH . R 5 HOH A 43 211 241 HOH HOH . R 5 HOH A 44 212 17 HOH HOH . R 5 HOH A 45 213 21 HOH HOH . R 5 HOH A 46 214 26 HOH HOH . R 5 HOH A 47 215 30 HOH HOH . R 5 HOH A 48 216 31 HOH HOH . R 5 HOH A 49 217 36 HOH HOH . R 5 HOH A 50 218 38 HOH HOH . R 5 HOH A 51 219 39 HOH HOH . R 5 HOH A 52 220 41 HOH HOH . R 5 HOH A 53 221 44 HOH HOH . R 5 HOH A 54 222 46 HOH HOH . R 5 HOH A 55 223 50 HOH HOH . R 5 HOH A 56 224 52 HOH HOH . R 5 HOH A 57 225 56 HOH HOH . R 5 HOH A 58 226 59 HOH HOH . R 5 HOH A 59 227 62 HOH HOH . R 5 HOH A 60 228 63 HOH HOH . R 5 HOH A 61 229 64 HOH HOH . R 5 HOH A 62 230 71 HOH HOH . R 5 HOH A 63 231 73 HOH HOH . R 5 HOH A 64 232 74 HOH HOH . R 5 HOH A 65 233 75 HOH HOH . R 5 HOH A 66 234 77 HOH HOH . R 5 HOH A 67 235 78 HOH HOH . R 5 HOH A 68 236 82 HOH HOH . R 5 HOH A 69 237 85 HOH HOH . R 5 HOH A 70 238 86 HOH HOH . R 5 HOH A 71 239 90 HOH HOH . R 5 HOH A 72 240 94 HOH HOH . R 5 HOH A 73 241 95 HOH HOH . R 5 HOH A 74 242 96 HOH HOH . R 5 HOH A 75 243 98 HOH HOH . R 5 HOH A 76 244 99 HOH HOH . R 5 HOH A 77 245 104 HOH HOH . R 5 HOH A 78 246 106 HOH HOH . R 5 HOH A 79 247 107 HOH HOH . R 5 HOH A 80 248 109 HOH HOH . R 5 HOH A 81 249 110 HOH HOH . R 5 HOH A 82 250 112 HOH HOH . R 5 HOH A 83 251 117 HOH HOH . R 5 HOH A 84 252 118 HOH HOH . R 5 HOH A 85 253 121 HOH HOH . R 5 HOH A 86 254 122 HOH HOH . R 5 HOH A 87 255 123 HOH HOH . R 5 HOH A 88 256 126 HOH HOH . R 5 HOH A 89 257 127 HOH HOH . R 5 HOH A 90 258 129 HOH HOH . R 5 HOH A 91 259 133 HOH HOH . R 5 HOH A 92 260 135 HOH HOH . R 5 HOH A 93 261 136 HOH HOH . R 5 HOH A 94 262 140 HOH HOH . R 5 HOH A 95 263 141 HOH HOH . R 5 HOH A 96 264 142 HOH HOH . R 5 HOH A 97 265 144 HOH HOH . R 5 HOH A 98 266 145 HOH HOH . R 5 HOH A 99 267 146 HOH HOH . R 5 HOH A 100 268 147 HOH HOH . R 5 HOH A 101 269 148 HOH HOH . R 5 HOH A 102 270 149 HOH HOH . R 5 HOH A 103 271 153 HOH HOH . R 5 HOH A 104 272 160 HOH HOH . S 5 HOH B 1 172 16 HOH HOH . S 5 HOH B 2 174 18 HOH HOH . S 5 HOH B 3 175 19 HOH HOH . S 5 HOH B 4 176 20 HOH HOH . S 5 HOH B 5 178 22 HOH HOH . S 5 HOH B 6 179 23 HOH HOH . S 5 HOH B 7 180 24 HOH HOH . S 5 HOH B 8 181 25 HOH HOH . S 5 HOH B 9 183 27 HOH HOH . S 5 HOH B 10 184 28 HOH HOH . S 5 HOH B 11 185 29 HOH HOH . S 5 HOH B 12 188 32 HOH HOH . S 5 HOH B 13 189 33 HOH HOH . S 5 HOH B 14 190 34 HOH HOH . S 5 HOH B 15 191 35 HOH HOH . S 5 HOH B 16 193 37 HOH HOH . S 5 HOH B 17 196 40 HOH HOH . S 5 HOH B 18 198 42 HOH HOH . S 5 HOH B 19 199 43 HOH HOH . S 5 HOH B 20 201 45 HOH HOH . S 5 HOH B 21 203 47 HOH HOH . S 5 HOH B 22 204 48 HOH HOH . S 5 HOH B 23 205 49 HOH HOH . S 5 HOH B 24 207 51 HOH HOH . S 5 HOH B 25 209 53 HOH HOH . S 5 HOH B 26 210 54 HOH HOH . S 5 HOH B 27 211 55 HOH HOH . S 5 HOH B 28 213 57 HOH HOH . S 5 HOH B 29 214 58 HOH HOH . S 5 HOH B 30 216 60 HOH HOH . S 5 HOH B 31 217 61 HOH HOH . S 5 HOH B 32 221 65 HOH HOH . S 5 HOH B 33 222 66 HOH HOH . S 5 HOH B 34 223 67 HOH HOH . S 5 HOH B 35 224 68 HOH HOH . S 5 HOH B 36 225 69 HOH HOH . S 5 HOH B 37 226 70 HOH HOH . S 5 HOH B 38 228 72 HOH HOH . S 5 HOH B 39 232 76 HOH HOH . S 5 HOH B 40 235 79 HOH HOH . S 5 HOH B 41 236 80 HOH HOH . S 5 HOH B 42 237 81 HOH HOH . S 5 HOH B 43 239 83 HOH HOH . S 5 HOH B 44 240 84 HOH HOH . S 5 HOH B 45 243 87 HOH HOH . S 5 HOH B 46 244 88 HOH HOH . S 5 HOH B 47 245 89 HOH HOH . S 5 HOH B 48 247 91 HOH HOH . S 5 HOH B 49 248 92 HOH HOH . S 5 HOH B 50 249 93 HOH HOH . S 5 HOH B 51 253 97 HOH HOH . S 5 HOH B 52 256 100 HOH HOH . S 5 HOH B 53 257 101 HOH HOH . S 5 HOH B 54 258 102 HOH HOH . S 5 HOH B 55 259 103 HOH HOH . S 5 HOH B 56 261 105 HOH HOH . S 5 HOH B 57 264 108 HOH HOH . S 5 HOH B 58 267 111 HOH HOH . S 5 HOH B 59 269 113 HOH HOH . S 5 HOH B 60 270 114 HOH HOH . S 5 HOH B 61 271 115 HOH HOH . S 5 HOH B 62 272 116 HOH HOH . S 5 HOH B 63 275 119 HOH HOH . S 5 HOH B 64 276 120 HOH HOH . S 5 HOH B 65 280 124 HOH HOH . S 5 HOH B 66 281 125 HOH HOH . S 5 HOH B 67 284 128 HOH HOH . S 5 HOH B 68 286 130 HOH HOH . S 5 HOH B 69 287 131 HOH HOH . S 5 HOH B 70 288 132 HOH HOH . S 5 HOH B 71 290 134 HOH HOH . S 5 HOH B 72 293 137 HOH HOH . S 5 HOH B 73 294 138 HOH HOH . S 5 HOH B 74 295 139 HOH HOH . S 5 HOH B 75 299 143 HOH HOH . S 5 HOH B 76 306 150 HOH HOH . S 5 HOH B 77 307 151 HOH HOH . S 5 HOH B 78 308 152 HOH HOH . S 5 HOH B 79 310 154 HOH HOH . S 5 HOH B 80 311 155 HOH HOH . S 5 HOH B 81 312 156 HOH HOH . S 5 HOH B 82 313 157 HOH HOH . S 5 HOH B 83 314 158 HOH HOH . S 5 HOH B 84 315 159 HOH HOH . S 5 HOH B 85 317 161 HOH HOH . S 5 HOH B 86 318 163 HOH HOH . S 5 HOH B 87 319 164 HOH HOH . S 5 HOH B 88 320 166 HOH HOH . S 5 HOH B 89 321 167 HOH HOH . S 5 HOH B 90 322 169 HOH HOH . S 5 HOH B 91 323 170 HOH HOH . S 5 HOH B 92 324 171 HOH HOH . S 5 HOH B 93 325 173 HOH HOH . S 5 HOH B 94 326 174 HOH HOH . S 5 HOH B 95 327 175 HOH HOH . S 5 HOH B 96 328 178 HOH HOH . S 5 HOH B 97 329 180 HOH HOH . S 5 HOH B 98 330 181 HOH HOH . S 5 HOH B 99 331 183 HOH HOH . S 5 HOH B 100 332 184 HOH HOH . S 5 HOH B 101 333 185 HOH HOH . S 5 HOH B 102 334 186 HOH HOH . S 5 HOH B 103 335 194 HOH HOH . S 5 HOH B 104 336 195 HOH HOH . S 5 HOH B 105 337 200 HOH HOH . S 5 HOH B 106 338 201 HOH HOH . S 5 HOH B 107 339 203 HOH HOH . S 5 HOH B 108 340 206 HOH HOH . S 5 HOH B 109 341 207 HOH HOH . S 5 HOH B 110 342 208 HOH HOH . S 5 HOH B 111 343 209 HOH HOH . S 5 HOH B 112 344 212 HOH HOH . S 5 HOH B 113 345 214 HOH HOH . S 5 HOH B 114 346 215 HOH HOH . S 5 HOH B 115 347 216 HOH HOH . S 5 HOH B 116 348 219 HOH HOH . S 5 HOH B 117 349 220 HOH HOH . S 5 HOH B 118 350 222 HOH HOH . S 5 HOH B 119 351 223 HOH HOH . S 5 HOH B 120 352 232 HOH HOH . S 5 HOH B 121 353 237 HOH HOH . S 5 HOH B 122 354 240 HOH HOH . S 5 HOH B 123 355 242 HOH HOH . S 5 HOH B 124 356 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 19.041 28.455 14.693 1 30.15 ? C1 EDO 166 A 1 HETATM 2 O O1 EDO . . . F 4 18.69 29.63 15.445 1 33.44 ? O1 EDO 166 A 1 HETATM 3 C C2 EDO . . . F 4 19.176 28.777 13.216 1 36.27 ? C2 EDO 166 A 1 HETATM 4 O O2 EDO . . . F 4 20.319 29.622 12.984 1 33.1 ? O2 EDO 166 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #