data_3D8Y
#
_model_server_result.job_id            6-nd9FuzPKGvLHDyxbePxQ 
_model_server_result.datetime_utc      '2024-12-31 04:32:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d8y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":125}' 
#
_entry.id    3D8Y 
#
_exptl.entry_id    3D8Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.1 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRATE ANION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.9 
_cell.angle_gamma         90 
_cell.entry_id            3D8Y 
_cell.length_a            100.161 
_cell.length_b            32.421 
_cell.length_c            72.567 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D8Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F 1 1 
B,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C6 H5 O7 -3' 
_chem_comp.formula_weight    189.1 
_chem_comp.id                FLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRATE ANION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CA FLC sing 83 n n 
CAC OA1 FLC doub 84 n n 
CAC OA2 FLC sing 85 n n 
CA CB FLC sing 86 n n 
CA HA1 FLC sing 87 n n 
CA HA2 FLC sing 88 n n 
CB CBC FLC sing 89 n n 
CB CG FLC sing 90 n n 
CB OHB FLC sing 91 n n 
CBC OB1 FLC doub 92 n n 
CBC OB2 FLC sing 93 n n 
CG CGC FLC sing 94 n n 
CG HG1 FLC sing 95 n n 
CG HG2 FLC sing 96 n n 
CGC OG1 FLC doub 97 n n 
CGC OG2 FLC sing 98 n n 
OHB HOB FLC sing 99 n n 
#
_atom_sites.entry_id                     3D8Y 
_atom_sites.fract_transf_matrix[1][1]    0.009984 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000157 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030844 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013782 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FLC A 1 125 1 FLC FLC . 
D 2 FLC A 1 126 2 FLC FLC . 
E 3 T3S A 1 127 1 T3S T3S . 
F 4 HOH A 1 128 2 HOH HOH . 
F 4 HOH A 2 129 7 HOH HOH . 
F 4 HOH A 3 130 8 HOH HOH . 
F 4 HOH A 4 131 10 HOH HOH . 
F 4 HOH A 5 132 13 HOH HOH . 
F 4 HOH A 6 133 16 HOH HOH . 
F 4 HOH A 7 134 17 HOH HOH . 
F 4 HOH A 8 135 20 HOH HOH . 
F 4 HOH A 9 136 21 HOH HOH . 
F 4 HOH A 10 137 23 HOH HOH . 
F 4 HOH A 11 138 26 HOH HOH . 
F 4 HOH A 12 139 29 HOH HOH . 
F 4 HOH A 13 140 32 HOH HOH . 
F 4 HOH A 14 141 36 HOH HOH . 
F 4 HOH A 15 142 37 HOH HOH . 
F 4 HOH A 16 143 42 HOH HOH . 
F 4 HOH A 17 144 44 HOH HOH . 
F 4 HOH A 18 145 47 HOH HOH . 
F 4 HOH A 19 146 49 HOH HOH . 
F 4 HOH A 20 147 53 HOH HOH . 
F 4 HOH A 21 148 55 HOH HOH . 
F 4 HOH A 22 149 56 HOH HOH . 
F 4 HOH A 23 150 58 HOH HOH . 
F 4 HOH A 24 151 61 HOH HOH . 
F 4 HOH A 25 152 62 HOH HOH . 
F 4 HOH A 26 153 64 HOH HOH . 
F 4 HOH A 27 154 66 HOH HOH . 
F 4 HOH A 28 155 69 HOH HOH . 
F 4 HOH A 29 156 70 HOH HOH . 
F 4 HOH A 30 157 71 HOH HOH . 
F 4 HOH A 31 158 74 HOH HOH . 
F 4 HOH A 32 159 75 HOH HOH . 
F 4 HOH A 33 160 77 HOH HOH . 
F 4 HOH A 34 161 80 HOH HOH . 
F 4 HOH A 35 162 83 HOH HOH . 
F 4 HOH A 36 163 84 HOH HOH . 
F 4 HOH A 37 164 85 HOH HOH . 
F 4 HOH A 38 165 89 HOH HOH . 
F 4 HOH A 39 166 93 HOH HOH . 
F 4 HOH A 40 167 94 HOH HOH . 
F 4 HOH A 41 168 96 HOH HOH . 
F 4 HOH A 42 169 99 HOH HOH . 
F 4 HOH A 43 170 103 HOH HOH . 
F 4 HOH A 44 171 105 HOH HOH . 
F 4 HOH A 45 172 107 HOH HOH . 
F 4 HOH A 46 173 108 HOH HOH . 
F 4 HOH A 47 174 110 HOH HOH . 
F 4 HOH A 48 175 114 HOH HOH . 
F 4 HOH A 49 176 117 HOH HOH . 
F 4 HOH A 50 177 118 HOH HOH . 
F 4 HOH A 51 178 121 HOH HOH . 
F 4 HOH A 52 179 122 HOH HOH . 
F 4 HOH A 53 180 124 HOH HOH . 
F 4 HOH A 54 181 125 HOH HOH . 
F 4 HOH A 55 182 126 HOH HOH . 
F 4 HOH A 56 183 127 HOH HOH . 
F 4 HOH A 57 184 128 HOH HOH . 
F 4 HOH A 58 185 130 HOH HOH . 
F 4 HOH A 59 186 131 HOH HOH . 
F 4 HOH A 60 187 132 HOH HOH . 
F 4 HOH A 61 188 134 HOH HOH . 
F 4 HOH A 62 189 135 HOH HOH . 
F 4 HOH A 63 190 139 HOH HOH . 
F 4 HOH A 64 191 140 HOH HOH . 
F 4 HOH A 65 192 141 HOH HOH . 
F 4 HOH A 66 193 142 HOH HOH . 
F 4 HOH A 67 194 143 HOH HOH . 
F 4 HOH A 68 195 144 HOH HOH . 
F 4 HOH A 69 196 145 HOH HOH . 
F 4 HOH A 70 197 146 HOH HOH . 
F 4 HOH A 71 198 147 HOH HOH . 
F 4 HOH A 72 199 148 HOH HOH . 
F 4 HOH A 73 200 149 HOH HOH . 
F 4 HOH A 74 201 150 HOH HOH . 
F 4 HOH A 75 202 151 HOH HOH . 
F 4 HOH A 76 203 152 HOH HOH . 
F 4 HOH A 77 204 153 HOH HOH . 
F 4 HOH A 78 206 156 HOH HOH . 
F 4 HOH A 79 207 157 HOH HOH . 
F 4 HOH A 80 208 158 HOH HOH . 
F 4 HOH A 81 209 159 HOH HOH . 
F 4 HOH A 82 210 160 HOH HOH . 
F 4 HOH A 83 211 161 HOH HOH . 
F 4 HOH A 84 212 162 HOH HOH . 
F 4 HOH A 85 213 163 HOH HOH . 
F 4 HOH A 86 214 164 HOH HOH . 
F 4 HOH A 87 215 165 HOH HOH . 
F 4 HOH A 88 216 166 HOH HOH . 
F 4 HOH A 89 217 167 HOH HOH . 
F 4 HOH A 90 218 168 HOH HOH . 
F 4 HOH A 91 219 169 HOH HOH . 
F 4 HOH A 92 220 177 HOH HOH . 
F 4 HOH A 93 221 192 HOH HOH . 
F 4 HOH A 94 222 193 HOH HOH . 
F 4 HOH A 95 223 197 HOH HOH . 
F 4 HOH A 96 224 199 HOH HOH . 
F 4 HOH A 97 225 200 HOH HOH . 
F 4 HOH A 98 226 201 HOH HOH . 
F 4 HOH A 99 227 208 HOH HOH . 
F 4 HOH A 100 228 209 HOH HOH . 
F 4 HOH A 101 229 210 HOH HOH . 
F 4 HOH A 102 230 211 HOH HOH . 
F 4 HOH A 103 231 212 HOH HOH . 
F 4 HOH A 104 232 213 HOH HOH . 
G 4 HOH B 1 205 155 HOH HOH . 
G 4 HOH B 2 206 1 HOH HOH . 
G 4 HOH B 3 207 3 HOH HOH . 
G 4 HOH B 4 208 4 HOH HOH . 
G 4 HOH B 5 209 5 HOH HOH . 
G 4 HOH B 6 210 6 HOH HOH . 
G 4 HOH B 7 211 9 HOH HOH . 
G 4 HOH B 8 212 11 HOH HOH . 
G 4 HOH B 9 213 12 HOH HOH . 
G 4 HOH B 10 214 14 HOH HOH . 
G 4 HOH B 11 215 15 HOH HOH . 
G 4 HOH B 12 216 18 HOH HOH . 
G 4 HOH B 13 217 19 HOH HOH . 
G 4 HOH B 14 218 22 HOH HOH . 
G 4 HOH B 15 219 24 HOH HOH . 
G 4 HOH B 16 220 25 HOH HOH . 
G 4 HOH B 17 221 27 HOH HOH . 
G 4 HOH B 18 222 28 HOH HOH . 
G 4 HOH B 19 223 30 HOH HOH . 
G 4 HOH B 20 224 31 HOH HOH . 
G 4 HOH B 21 225 33 HOH HOH . 
G 4 HOH B 22 226 34 HOH HOH . 
G 4 HOH B 23 227 35 HOH HOH . 
G 4 HOH B 24 228 38 HOH HOH . 
G 4 HOH B 25 229 39 HOH HOH . 
G 4 HOH B 26 230 40 HOH HOH . 
G 4 HOH B 27 231 41 HOH HOH . 
G 4 HOH B 28 232 43 HOH HOH . 
G 4 HOH B 29 233 45 HOH HOH . 
G 4 HOH B 30 234 46 HOH HOH . 
G 4 HOH B 31 235 48 HOH HOH . 
G 4 HOH B 32 236 50 HOH HOH . 
G 4 HOH B 33 237 51 HOH HOH . 
G 4 HOH B 34 238 52 HOH HOH . 
G 4 HOH B 35 239 54 HOH HOH . 
G 4 HOH B 36 240 57 HOH HOH . 
G 4 HOH B 37 241 59 HOH HOH . 
G 4 HOH B 38 242 60 HOH HOH . 
G 4 HOH B 39 243 63 HOH HOH . 
G 4 HOH B 40 244 65 HOH HOH . 
G 4 HOH B 41 245 67 HOH HOH . 
G 4 HOH B 42 246 68 HOH HOH . 
G 4 HOH B 43 247 72 HOH HOH . 
G 4 HOH B 44 248 73 HOH HOH . 
G 4 HOH B 45 249 76 HOH HOH . 
G 4 HOH B 46 250 78 HOH HOH . 
G 4 HOH B 47 251 79 HOH HOH . 
G 4 HOH B 48 252 81 HOH HOH . 
G 4 HOH B 49 253 82 HOH HOH . 
G 4 HOH B 50 254 86 HOH HOH . 
G 4 HOH B 51 255 87 HOH HOH . 
G 4 HOH B 52 256 88 HOH HOH . 
G 4 HOH B 53 257 90 HOH HOH . 
G 4 HOH B 54 258 91 HOH HOH . 
G 4 HOH B 55 259 92 HOH HOH . 
G 4 HOH B 56 260 95 HOH HOH . 
G 4 HOH B 57 261 97 HOH HOH . 
G 4 HOH B 58 262 98 HOH HOH . 
G 4 HOH B 59 263 100 HOH HOH . 
G 4 HOH B 60 264 101 HOH HOH . 
G 4 HOH B 61 265 102 HOH HOH . 
G 4 HOH B 62 266 104 HOH HOH . 
G 4 HOH B 63 267 106 HOH HOH . 
G 4 HOH B 64 268 109 HOH HOH . 
G 4 HOH B 65 269 111 HOH HOH . 
G 4 HOH B 66 270 112 HOH HOH . 
G 4 HOH B 67 271 113 HOH HOH . 
G 4 HOH B 68 272 115 HOH HOH . 
G 4 HOH B 69 273 116 HOH HOH . 
G 4 HOH B 70 274 119 HOH HOH . 
G 4 HOH B 71 275 120 HOH HOH . 
G 4 HOH B 72 276 123 HOH HOH . 
G 4 HOH B 73 277 129 HOH HOH . 
G 4 HOH B 74 278 133 HOH HOH . 
G 4 HOH B 75 279 136 HOH HOH . 
G 4 HOH B 76 280 137 HOH HOH . 
G 4 HOH B 77 281 138 HOH HOH . 
G 4 HOH B 78 282 154 HOH HOH . 
G 4 HOH B 79 283 170 HOH HOH . 
G 4 HOH B 80 284 171 HOH HOH . 
G 4 HOH B 81 285 172 HOH HOH . 
G 4 HOH B 82 286 173 HOH HOH . 
G 4 HOH B 83 287 174 HOH HOH . 
G 4 HOH B 84 288 175 HOH HOH . 
G 4 HOH B 85 289 176 HOH HOH . 
G 4 HOH B 86 290 178 HOH HOH . 
G 4 HOH B 87 291 179 HOH HOH . 
G 4 HOH B 88 292 180 HOH HOH . 
G 4 HOH B 89 293 181 HOH HOH . 
G 4 HOH B 90 294 182 HOH HOH . 
G 4 HOH B 91 295 183 HOH HOH . 
G 4 HOH B 92 296 184 HOH HOH . 
G 4 HOH B 93 297 185 HOH HOH . 
G 4 HOH B 94 298 186 HOH HOH . 
G 4 HOH B 95 299 187 HOH HOH . 
G 4 HOH B 96 300 188 HOH HOH . 
G 4 HOH B 97 301 189 HOH HOH . 
G 4 HOH B 98 302 190 HOH HOH . 
G 4 HOH B 99 303 191 HOH HOH . 
G 4 HOH B 100 304 194 HOH HOH . 
G 4 HOH B 101 305 195 HOH HOH . 
G 4 HOH B 102 306 196 HOH HOH . 
G 4 HOH B 103 307 198 HOH HOH . 
G 4 HOH B 104 308 202 HOH HOH . 
G 4 HOH B 105 309 203 HOH HOH . 
G 4 HOH B 106 310 204 HOH HOH . 
G 4 HOH B 107 311 205 HOH HOH . 
G 4 HOH B 108 312 206 HOH HOH . 
G 4 HOH B 109 313 207 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC FLC . . . C 2 40.202 5.269 12.182 1 43.77 ? CAC FLC 125 A 1 
HETATM 2 C CA FLC . . . C 2 39.788 4.353 13.31 1 43.38 ? CA FLC 125 A 1 
HETATM 3 C CB FLC . . . C 2 38.494 4.894 13.914 1 43.04 ? CB FLC 125 A 1 
HETATM 4 C CBC FLC . . . C 2 38.828 5.864 15.027 1 44.43 ? CBC FLC 125 A 1 
HETATM 5 C CG FLC . . . C 2 37.598 3.758 14.44 1 40.2 ? CG FLC 125 A 1 
HETATM 6 C CGC FLC . . . C 2 36.137 4.048 14.197 1 33.67 ? CGC FLC 125 A 1 
HETATM 7 O OA1 FLC . . . C 2 40.932 6.253 12.462 1 44.08 ? OA1 FLC 125 A 1 
HETATM 8 O OA2 FLC . . . C 2 39.782 5.019 11.023 1 43.19 ? OA2 FLC 125 A 1 
HETATM 9 O OB1 FLC . . . C 2 38.34 7.02 14.965 1 46.03 ? OB1 FLC 125 A 1 
HETATM 10 O OB2 FLC . . . C 2 39.581 5.497 15.966 1 45.96 ? OB2 FLC 125 A 1 
HETATM 11 O OG1 FLC . . . C 2 35.771 5.232 14.38 1 33.5 ? OG1 FLC 125 A 1 
HETATM 12 O OG2 FLC . . . C 2 35.349 3.137 13.831 1 27.12 ? OG2 FLC 125 A 1 
HETATM 13 O OHB FLC . . . C 2 37.814 5.633 12.884 1 44.13 ? OHB FLC 125 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#