data_3D91 # _model_server_result.job_id zBsARnA_dYYhLrsW1zI_ZA _model_server_result.datetime_utc '2024-12-04 00:04:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":351}' # _entry.id 3D91 # _exptl.entry_id 3D91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D91 _cell.length_a 66.787 _cell.length_b 93.546 _cell.length_c 117.434 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 51 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf2 A SG CYS 217 A CYS 217 1_555 A SG CYS 221 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 259 A CYS 259 1_555 A SG CYS 296 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 B SG CYS 51 B CYS 51 1_555 B SG CYS 58 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 B SG CYS 217 B CYS 217 1_555 B SG CYS 221 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf6 B SG CYS 259 B CYS 259 1_555 B SG CYS 296 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 3D91 _atom_sites.fract_transf_matrix[1][1] 0.014973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 REM A 1 350 350 REM RO1 . D 3 DMS A 1 351 1 DMS DMS . E 2 REM B 1 350 350 REM RO1 . F 3 DMS B 1 351 2 DMS DMS . G 4 HOH A 1 352 1 HOH HOH . G 4 HOH A 2 353 2 HOH HOH . G 4 HOH A 3 354 3 HOH HOH . G 4 HOH A 4 355 4 HOH HOH . G 4 HOH A 5 356 5 HOH HOH . G 4 HOH A 6 357 6 HOH HOH . G 4 HOH A 7 358 7 HOH HOH . G 4 HOH A 8 359 8 HOH HOH . G 4 HOH A 9 360 10 HOH HOH . G 4 HOH A 10 361 15 HOH HOH . G 4 HOH A 11 362 16 HOH HOH . G 4 HOH A 12 363 17 HOH HOH . G 4 HOH A 13 364 18 HOH HOH . G 4 HOH A 14 365 19 HOH HOH . G 4 HOH A 15 366 20 HOH HOH . G 4 HOH A 16 367 21 HOH HOH . G 4 HOH A 17 368 24 HOH HOH . G 4 HOH A 18 369 25 HOH HOH . G 4 HOH A 19 370 26 HOH HOH . G 4 HOH A 20 371 29 HOH HOH . G 4 HOH A 21 372 31 HOH HOH . G 4 HOH A 22 373 34 HOH HOH . G 4 HOH A 23 374 38 HOH HOH . G 4 HOH A 24 375 39 HOH HOH . G 4 HOH A 25 376 42 HOH HOH . G 4 HOH A 26 377 44 HOH HOH . G 4 HOH A 27 378 46 HOH HOH . G 4 HOH A 28 379 49 HOH HOH . G 4 HOH A 29 380 50 HOH HOH . G 4 HOH A 30 381 52 HOH HOH . G 4 HOH A 31 382 54 HOH HOH . G 4 HOH A 32 383 55 HOH HOH . G 4 HOH A 33 384 56 HOH HOH . G 4 HOH A 34 385 58 HOH HOH . G 4 HOH A 35 386 61 HOH HOH . G 4 HOH A 36 387 63 HOH HOH . G 4 HOH A 37 388 64 HOH HOH . G 4 HOH A 38 389 65 HOH HOH . G 4 HOH A 39 390 66 HOH HOH . G 4 HOH A 40 391 69 HOH HOH . G 4 HOH A 41 392 77 HOH HOH . G 4 HOH A 42 393 83 HOH HOH . G 4 HOH A 43 394 84 HOH HOH . G 4 HOH A 44 395 85 HOH HOH . G 4 HOH A 45 396 88 HOH HOH . G 4 HOH A 46 397 90 HOH HOH . G 4 HOH A 47 398 94 HOH HOH . G 4 HOH A 48 399 95 HOH HOH . G 4 HOH A 49 400 96 HOH HOH . G 4 HOH A 50 401 100 HOH HOH . G 4 HOH A 51 402 102 HOH HOH . G 4 HOH A 52 403 103 HOH HOH . G 4 HOH A 53 404 106 HOH HOH . G 4 HOH A 54 405 107 HOH HOH . G 4 HOH A 55 406 108 HOH HOH . G 4 HOH A 56 407 110 HOH HOH . G 4 HOH A 57 408 113 HOH HOH . G 4 HOH A 58 409 114 HOH HOH . G 4 HOH A 59 410 116 HOH HOH . G 4 HOH A 60 411 119 HOH HOH . G 4 HOH A 61 412 122 HOH HOH . G 4 HOH A 62 413 123 HOH HOH . G 4 HOH A 63 414 124 HOH HOH . G 4 HOH A 64 415 125 HOH HOH . G 4 HOH A 65 416 126 HOH HOH . G 4 HOH A 66 417 127 HOH HOH . G 4 HOH A 67 418 129 HOH HOH . G 4 HOH A 68 419 131 HOH HOH . G 4 HOH A 69 420 132 HOH HOH . G 4 HOH A 70 421 136 HOH HOH . G 4 HOH A 71 422 137 HOH HOH . G 4 HOH A 72 423 140 HOH HOH . G 4 HOH A 73 424 141 HOH HOH . G 4 HOH A 74 425 144 HOH HOH . G 4 HOH A 75 426 145 HOH HOH . G 4 HOH A 76 427 146 HOH HOH . G 4 HOH A 77 428 147 HOH HOH . G 4 HOH A 78 429 149 HOH HOH . G 4 HOH A 79 430 150 HOH HOH . G 4 HOH A 80 431 151 HOH HOH . G 4 HOH A 81 432 153 HOH HOH . G 4 HOH A 82 433 154 HOH HOH . G 4 HOH A 83 434 155 HOH HOH . G 4 HOH A 84 435 156 HOH HOH . G 4 HOH A 85 436 159 HOH HOH . G 4 HOH A 86 437 160 HOH HOH . G 4 HOH A 87 438 162 HOH HOH . G 4 HOH A 88 439 163 HOH HOH . G 4 HOH A 89 440 164 HOH HOH . G 4 HOH A 90 441 165 HOH HOH . G 4 HOH A 91 442 167 HOH HOH . G 4 HOH A 92 443 168 HOH HOH . G 4 HOH A 93 444 169 HOH HOH . G 4 HOH A 94 445 170 HOH HOH . G 4 HOH A 95 446 171 HOH HOH . G 4 HOH A 96 447 173 HOH HOH . G 4 HOH A 97 448 176 HOH HOH . G 4 HOH A 98 449 179 HOH HOH . G 4 HOH A 99 450 180 HOH HOH . G 4 HOH A 100 451 181 HOH HOH . G 4 HOH A 101 452 184 HOH HOH . G 4 HOH A 102 453 185 HOH HOH . G 4 HOH A 103 454 186 HOH HOH . G 4 HOH A 104 455 188 HOH HOH . G 4 HOH A 105 456 191 HOH HOH . G 4 HOH A 106 457 193 HOH HOH . G 4 HOH A 107 458 194 HOH HOH . G 4 HOH A 108 459 196 HOH HOH . G 4 HOH A 109 460 200 HOH HOH . G 4 HOH A 110 461 205 HOH HOH . G 4 HOH A 111 462 207 HOH HOH . G 4 HOH A 112 463 209 HOH HOH . G 4 HOH A 113 464 210 HOH HOH . G 4 HOH A 114 465 211 HOH HOH . G 4 HOH A 115 466 212 HOH HOH . G 4 HOH A 116 467 213 HOH HOH . G 4 HOH A 117 468 214 HOH HOH . G 4 HOH A 118 469 215 HOH HOH . G 4 HOH A 119 470 216 HOH HOH . G 4 HOH A 120 471 217 HOH HOH . G 4 HOH A 121 472 219 HOH HOH . G 4 HOH A 122 473 222 HOH HOH . G 4 HOH A 123 474 223 HOH HOH . G 4 HOH A 124 475 225 HOH HOH . G 4 HOH A 125 476 226 HOH HOH . G 4 HOH A 126 477 227 HOH HOH . G 4 HOH A 127 478 228 HOH HOH . G 4 HOH A 128 479 231 HOH HOH . G 4 HOH A 129 480 234 HOH HOH . G 4 HOH A 130 481 237 HOH HOH . G 4 HOH A 131 482 239 HOH HOH . G 4 HOH A 132 483 240 HOH HOH . G 4 HOH A 133 484 241 HOH HOH . G 4 HOH A 134 485 242 HOH HOH . G 4 HOH A 135 486 243 HOH HOH . G 4 HOH A 136 487 246 HOH HOH . G 4 HOH A 137 488 265 HOH HOH . G 4 HOH A 138 489 268 HOH HOH . G 4 HOH A 139 490 271 HOH HOH . G 4 HOH A 140 491 274 HOH HOH . G 4 HOH A 141 492 275 HOH HOH . G 4 HOH A 142 493 278 HOH HOH . G 4 HOH A 143 494 67 HOH HOH . H 4 HOH B 1 352 9 HOH HOH . H 4 HOH B 2 353 11 HOH HOH . H 4 HOH B 3 354 12 HOH HOH . H 4 HOH B 4 355 13 HOH HOH . H 4 HOH B 5 356 14 HOH HOH . H 4 HOH B 6 357 22 HOH HOH . H 4 HOH B 7 358 23 HOH HOH . H 4 HOH B 8 359 27 HOH HOH . H 4 HOH B 9 360 28 HOH HOH . H 4 HOH B 10 361 30 HOH HOH . H 4 HOH B 11 362 32 HOH HOH . H 4 HOH B 12 363 33 HOH HOH . H 4 HOH B 13 364 35 HOH HOH . H 4 HOH B 14 365 36 HOH HOH . H 4 HOH B 15 366 37 HOH HOH . H 4 HOH B 16 367 40 HOH HOH . H 4 HOH B 17 368 41 HOH HOH . H 4 HOH B 18 369 43 HOH HOH . H 4 HOH B 19 370 45 HOH HOH . H 4 HOH B 20 371 47 HOH HOH . H 4 HOH B 21 372 48 HOH HOH . H 4 HOH B 22 373 53 HOH HOH . H 4 HOH B 23 374 57 HOH HOH . H 4 HOH B 24 375 60 HOH HOH . H 4 HOH B 25 376 62 HOH HOH . H 4 HOH B 26 378 68 HOH HOH . H 4 HOH B 27 379 71 HOH HOH . H 4 HOH B 28 380 72 HOH HOH . H 4 HOH B 29 381 74 HOH HOH . H 4 HOH B 30 382 75 HOH HOH . H 4 HOH B 31 383 76 HOH HOH . H 4 HOH B 32 384 78 HOH HOH . H 4 HOH B 33 385 79 HOH HOH . H 4 HOH B 34 386 80 HOH HOH . H 4 HOH B 35 387 81 HOH HOH . H 4 HOH B 36 388 82 HOH HOH . H 4 HOH B 37 389 86 HOH HOH . H 4 HOH B 38 390 87 HOH HOH . H 4 HOH B 39 391 89 HOH HOH . H 4 HOH B 40 392 91 HOH HOH . H 4 HOH B 41 393 92 HOH HOH . H 4 HOH B 42 394 93 HOH HOH . H 4 HOH B 43 395 98 HOH HOH . H 4 HOH B 44 396 99 HOH HOH . H 4 HOH B 45 397 101 HOH HOH . H 4 HOH B 46 398 104 HOH HOH . H 4 HOH B 47 399 105 HOH HOH . H 4 HOH B 48 400 109 HOH HOH . H 4 HOH B 49 401 111 HOH HOH . H 4 HOH B 50 402 112 HOH HOH . H 4 HOH B 51 403 115 HOH HOH . H 4 HOH B 52 404 117 HOH HOH . H 4 HOH B 53 405 118 HOH HOH . H 4 HOH B 54 406 120 HOH HOH . H 4 HOH B 55 407 121 HOH HOH . H 4 HOH B 56 408 128 HOH HOH . H 4 HOH B 57 409 130 HOH HOH . H 4 HOH B 58 410 134 HOH HOH . H 4 HOH B 59 411 135 HOH HOH . H 4 HOH B 60 412 138 HOH HOH . H 4 HOH B 61 413 139 HOH HOH . H 4 HOH B 62 414 143 HOH HOH . H 4 HOH B 63 415 148 HOH HOH . H 4 HOH B 64 416 152 HOH HOH . H 4 HOH B 65 417 157 HOH HOH . H 4 HOH B 66 418 158 HOH HOH . H 4 HOH B 67 419 166 HOH HOH . H 4 HOH B 68 420 172 HOH HOH . H 4 HOH B 69 421 174 HOH HOH . H 4 HOH B 70 422 175 HOH HOH . H 4 HOH B 71 423 177 HOH HOH . H 4 HOH B 72 424 178 HOH HOH . H 4 HOH B 73 425 182 HOH HOH . H 4 HOH B 74 426 183 HOH HOH . H 4 HOH B 75 427 187 HOH HOH . H 4 HOH B 76 428 189 HOH HOH . H 4 HOH B 77 429 190 HOH HOH . H 4 HOH B 78 430 192 HOH HOH . H 4 HOH B 79 431 195 HOH HOH . H 4 HOH B 80 432 197 HOH HOH . H 4 HOH B 81 433 198 HOH HOH . H 4 HOH B 82 434 199 HOH HOH . H 4 HOH B 83 435 201 HOH HOH . H 4 HOH B 84 436 202 HOH HOH . H 4 HOH B 85 437 203 HOH HOH . H 4 HOH B 86 438 204 HOH HOH . H 4 HOH B 87 439 208 HOH HOH . H 4 HOH B 88 440 218 HOH HOH . H 4 HOH B 89 441 220 HOH HOH . H 4 HOH B 90 442 221 HOH HOH . H 4 HOH B 91 443 224 HOH HOH . H 4 HOH B 92 444 230 HOH HOH . H 4 HOH B 93 445 232 HOH HOH . H 4 HOH B 94 446 233 HOH HOH . H 4 HOH B 95 447 235 HOH HOH . H 4 HOH B 96 448 236 HOH HOH . H 4 HOH B 97 449 238 HOH HOH . H 4 HOH B 98 450 244 HOH HOH . H 4 HOH B 99 451 245 HOH HOH . H 4 HOH B 100 452 247 HOH HOH . H 4 HOH B 101 453 249 HOH HOH . H 4 HOH B 102 454 250 HOH HOH . H 4 HOH B 103 455 251 HOH HOH . H 4 HOH B 104 456 252 HOH HOH . H 4 HOH B 105 457 253 HOH HOH . H 4 HOH B 106 458 254 HOH HOH . H 4 HOH B 107 459 255 HOH HOH . H 4 HOH B 108 460 261 HOH HOH . H 4 HOH B 109 461 262 HOH HOH . H 4 HOH B 110 462 263 HOH HOH . H 4 HOH B 111 463 267 HOH HOH . H 4 HOH B 112 464 270 HOH HOH . H 4 HOH B 113 465 273 HOH HOH . H 4 HOH B 114 466 277 HOH HOH . H 4 HOH B 115 467 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -2.148 10.778 -7.435 1 47.9 ? S DMS 351 A 1 HETATM 2 O O DMS . . . D 3 -1.027 12.097 -7.094 1 48.84 ? O DMS 351 A 1 HETATM 3 C C1 DMS . . . D 3 -2.208 10.754 -9.253 1 49.38 ? C1 DMS 351 A 1 HETATM 4 C C2 DMS . . . D 3 -1.459 9.122 -7.188 1 48.8 ? C2 DMS 351 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #