data_3D9C # _model_server_result.job_id A1OeyTi77SQsnYjzjtVGBg _model_server_result.datetime_utc '2024-10-19 19:33:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":322}' # _entry.id 3D9C # _exptl.entry_id 3D9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.317 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-methoxy-3-oxopropyl}phenyl)methaneseleninic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3D9C _cell.length_a 89.279 _cell.length_b 89.279 _cell.length_c 105.656 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H23 N O6 Se' _chem_comp.formula_weight 404.317 _chem_comp.id ZYZ _chem_comp.mon_nstd_flag . _chem_comp.name '(4-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-methoxy-3-oxopropyl}phenyl)methaneseleninic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SE O51 ZYZ sing 376 n n C1 SE ZYZ sing 377 n n C1 H1 ZYZ sing 378 n n C1 H1A ZYZ sing 379 n n N1 C9 ZYZ sing 380 n n N1 HN1 ZYZ sing 381 n n C2 C1 ZYZ sing 382 n n C3 C2 ZYZ sing 383 n y C3 H3 ZYZ sing 384 n n C4 C3 ZYZ doub 385 n y C4 H4 ZYZ sing 386 n n O4 C12 ZYZ sing 387 n n O4 C10 ZYZ sing 388 n n C5 C4 ZYZ sing 389 n y C5 C6 ZYZ doub 390 n y O5 C11 ZYZ doub 391 n n C6 C7 ZYZ sing 392 n y C6 H6 ZYZ sing 393 n n O6 C11 ZYZ sing 394 n n C7 C2 ZYZ doub 395 n y C7 H7 ZYZ sing 396 n n C8 C5 ZYZ sing 397 n n C8 H8 ZYZ sing 398 n n C8 H8A ZYZ sing 399 n n C9 C8 ZYZ sing 400 n n C9 C10 ZYZ sing 401 n n C9 H9 ZYZ sing 402 n n C10 O3 ZYZ doub 403 n n C11 N1 ZYZ sing 404 n n C12 H12 ZYZ sing 405 n n C12 H12A ZYZ sing 406 n n C12 H12B ZYZ sing 407 n n C13 O6 ZYZ sing 408 n n C13 C14 ZYZ sing 409 n n C14 H14 ZYZ sing 410 n n C14 H14A ZYZ sing 411 n n C14 H14B ZYZ sing 412 n n C15 C13 ZYZ sing 413 n n C15 H15 ZYZ sing 414 n n C15 H15A ZYZ sing 415 n n C15 H15B ZYZ sing 416 n n C16 C13 ZYZ sing 417 n n C16 H16 ZYZ sing 418 n n C16 H16A ZYZ sing 419 n n C16 H16B ZYZ sing 420 n n SE O61 ZYZ doub 421 n n O51 H23 ZYZ sing 422 n n # _atom_sites.entry_id 3D9C _atom_sites.fract_transf_matrix[1][1] 0.011201 _atom_sites.fract_transf_matrix[1][2] 0.006467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZYZ A 1 322 215 ZYZ ZYZ . C 3 HOH A 1 323 1 HOH HOH . C 3 HOH A 2 324 2 HOH HOH . C 3 HOH A 3 325 3 HOH HOH . C 3 HOH A 4 326 4 HOH HOH . C 3 HOH A 5 327 5 HOH HOH . C 3 HOH A 6 328 6 HOH HOH . C 3 HOH A 7 329 7 HOH HOH . C 3 HOH A 8 330 8 HOH HOH . C 3 HOH A 9 331 9 HOH HOH . C 3 HOH A 10 332 10 HOH HOH . C 3 HOH A 11 333 11 HOH HOH . C 3 HOH A 12 334 12 HOH HOH . C 3 HOH A 13 335 13 HOH HOH . C 3 HOH A 14 336 14 HOH HOH . C 3 HOH A 15 337 15 HOH HOH . C 3 HOH A 16 338 16 HOH HOH . C 3 HOH A 17 339 17 HOH HOH . C 3 HOH A 18 340 18 HOH HOH . C 3 HOH A 19 341 19 HOH HOH . C 3 HOH A 20 342 20 HOH HOH . C 3 HOH A 21 343 21 HOH HOH . C 3 HOH A 22 344 22 HOH HOH . C 3 HOH A 23 345 23 HOH HOH . C 3 HOH A 24 346 24 HOH HOH . C 3 HOH A 25 347 25 HOH HOH . C 3 HOH A 26 348 26 HOH HOH . C 3 HOH A 27 349 27 HOH HOH . C 3 HOH A 28 350 28 HOH HOH . C 3 HOH A 29 351 29 HOH HOH . C 3 HOH A 30 352 30 HOH HOH . C 3 HOH A 31 353 31 HOH HOH . C 3 HOH A 32 354 32 HOH HOH . C 3 HOH A 33 355 33 HOH HOH . C 3 HOH A 34 356 34 HOH HOH . C 3 HOH A 35 357 35 HOH HOH . C 3 HOH A 36 358 36 HOH HOH . C 3 HOH A 37 359 37 HOH HOH . C 3 HOH A 38 360 38 HOH HOH . C 3 HOH A 39 361 39 HOH HOH . C 3 HOH A 40 362 40 HOH HOH . C 3 HOH A 41 363 41 HOH HOH . C 3 HOH A 42 364 42 HOH HOH . C 3 HOH A 43 365 43 HOH HOH . C 3 HOH A 44 366 44 HOH HOH . C 3 HOH A 45 367 45 HOH HOH . C 3 HOH A 46 368 46 HOH HOH . C 3 HOH A 47 369 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SE SE ZYZ . . . B 2 -1.89 60.072 8.108 1 55.95 ? SE ZYZ 322 A 1 HETATM 2 C C1 ZYZ . . . B 2 -1.751 58.837 6.577 1 52.53 ? C1 ZYZ 322 A 1 HETATM 3 N N1 ZYZ . . . B 2 -3.285 62.897 -0.055 1 57.6 ? N1 ZYZ 322 A 1 HETATM 4 C C2 ZYZ . . . B 2 -1.72 59.534 5.237 1 52.55 ? C2 ZYZ 322 A 1 HETATM 5 C C3 ZYZ . . . B 2 -0.947 60.718 5.059 1 49.05 ? C3 ZYZ 322 A 1 HETATM 6 O O3 ZYZ . . . B 2 -1.548 64.342 2.852 1 54.42 ? O3 ZYZ 322 A 1 HETATM 7 C C4 ZYZ . . . B 2 -0.91 61.374 3.806 1 51.64 ? C4 ZYZ 322 A 1 HETATM 8 O O4 ZYZ . . . B 2 -1.906 64.996 0.665 1 54.44 ? O4 ZYZ 322 A 1 HETATM 9 C C5 ZYZ . . . B 2 -1.644 60.879 2.68 1 52.52 ? C5 ZYZ 322 A 1 HETATM 10 O O5 ZYZ . . . B 2 -3.168 61.573 -1.849 1 60.18 ? O5 ZYZ 322 A 1 HETATM 11 C C6 ZYZ . . . B 2 -2.422 59.692 2.851 1 51.12 ? C6 ZYZ 322 A 1 HETATM 12 O O6 ZYZ . . . B 2 -1.67 63.315 -1.783 1 61.28 ? O6 ZYZ 322 A 1 HETATM 13 C C7 ZYZ . . . B 2 -2.458 59.029 4.115 1 52.64 ? C7 ZYZ 322 A 1 HETATM 14 C C8 ZYZ . . . B 2 -1.59 61.607 1.35 1 53.43 ? C8 ZYZ 322 A 1 HETATM 15 C C9 ZYZ . . . B 2 -2.629 62.775 1.29 1 56.07 ? C9 ZYZ 322 A 1 HETATM 16 C C10 ZYZ . . . B 2 -1.963 64.115 1.719 1 54.65 ? C10 ZYZ 322 A 1 HETATM 17 C C11 ZYZ . . . B 2 -2.716 62.551 -1.276 1 60.18 ? C11 ZYZ 322 A 1 HETATM 18 C C12 ZYZ . . . B 2 -1.323 66.265 0.898 1 55.66 ? C12 ZYZ 322 A 1 HETATM 19 C C13 ZYZ . . . B 2 -1.792 64.281 -2.837 1 63.28 ? C13 ZYZ 322 A 1 HETATM 20 C C14 ZYZ . . . B 2 -2.784 65.416 -2.471 1 60.87 ? C14 ZYZ 322 A 1 HETATM 21 C C15 ZYZ . . . B 2 -0.382 64.874 -3.054 1 62.11 ? C15 ZYZ 322 A 1 HETATM 22 C C16 ZYZ . . . B 2 -2.216 63.623 -4.178 1 61.54 ? C16 ZYZ 322 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #