data_3D9K
#
_model_server_result.job_id            AkEQB3iGzhP92pgLHnuFjQ 
_model_server_result.datetime_utc      '2024-12-18 01:46:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d9k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1002}' 
#
_entry.id    3D9K 
#
_exptl.entry_id    3D9K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3D9K 
_cell.length_a            56.45 
_cell.length_b            56.45 
_cell.length_c            106.27 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D9K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,D,J,K,L,M,O,P 1 1 
A,C,E,F,G,H,I,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C TYR 8 Y TYR 1 1_555 C N SEP 9 Y SEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 C C SEP 9 Y SEP 2 1_555 C N PRO 10 Y PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale3 D C TYR 1 Z TYR 1 1_555 D N SEP 2 Z SEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 D C SEP 2 Z SEP 2 1_555 D N PRO 3 Z PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale5 D C THR 4 Z THR 4 1_555 D N SEP 5 Z SEP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale6 D C SEP 5 Z SEP 5 1_555 D N PRO 6 Z PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale7 D C TYR 8 Z TYR 8 1_555 D N SEP 9 Z SEP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 308 n n 
S O2 SO4 doub 309 n n 
S O3 SO4 sing 310 n n 
S O4 SO4 sing 311 n n 
#
_atom_sites.entry_id                     3D9K 
_atom_sites.fract_transf_matrix[1][1]    0.017715 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 1001 1001 SO4 SO4 . 
F 3 SO4 A 1 1003 1003 SO4 SO4 . 
G 3 SO4 A 1 1004 1004 SO4 SO4 . 
H 3 SO4 A 1 1008 1008 SO4 SO4 . 
I 3 SO4 A 1 1010 1010 SO4 SO4 . 
J 3 SO4 B 1 1002 1002 SO4 SO4 . 
K 3 SO4 B 1 1007 1007 SO4 SO4 . 
L 3 SO4 B 1 1012 1012 SO4 SO4 . 
M 3 SO4 Z 1 1006 1006 SO4 SO4 . 
N 4 HOH A 1 1011 1011 HOH HOH . 
N 4 HOH A 2 1012 1012 HOH HOH . 
N 4 HOH A 3 1013 1013 HOH HOH . 
N 4 HOH A 4 1014 1014 HOH HOH . 
N 4 HOH A 5 1015 1015 HOH HOH . 
N 4 HOH A 6 1016 1016 HOH HOH . 
N 4 HOH A 7 1017 1017 HOH HOH . 
N 4 HOH A 8 1018 1018 HOH HOH . 
N 4 HOH A 9 1019 1019 HOH HOH . 
N 4 HOH A 10 1020 1020 HOH HOH . 
N 4 HOH A 11 1021 1021 HOH HOH . 
N 4 HOH A 12 1022 1022 HOH HOH . 
N 4 HOH A 13 1023 1023 HOH HOH . 
N 4 HOH A 14 1024 1024 HOH HOH . 
N 4 HOH A 15 1025 1025 HOH HOH . 
N 4 HOH A 16 1026 1026 HOH HOH . 
N 4 HOH A 17 1027 1027 HOH HOH . 
N 4 HOH A 18 1028 1028 HOH HOH . 
N 4 HOH A 19 1029 1029 HOH HOH . 
N 4 HOH A 20 1030 1030 HOH HOH . 
N 4 HOH A 21 1031 1031 HOH HOH . 
N 4 HOH A 22 1032 1032 HOH HOH . 
N 4 HOH A 23 1033 1033 HOH HOH . 
N 4 HOH A 24 1034 1034 HOH HOH . 
N 4 HOH A 25 1035 1035 HOH HOH . 
N 4 HOH A 26 1036 1036 HOH HOH . 
N 4 HOH A 27 1037 1037 HOH HOH . 
N 4 HOH A 28 1038 1038 HOH HOH . 
N 4 HOH A 29 1039 1039 HOH HOH . 
N 4 HOH A 30 1040 1040 HOH HOH . 
N 4 HOH A 31 1041 1041 HOH HOH . 
N 4 HOH A 32 1042 1042 HOH HOH . 
N 4 HOH A 33 1043 1043 HOH HOH . 
N 4 HOH A 34 1044 1044 HOH HOH . 
N 4 HOH A 35 1045 1045 HOH HOH . 
N 4 HOH A 36 1046 1046 HOH HOH . 
N 4 HOH A 37 1047 1047 HOH HOH . 
N 4 HOH A 38 1048 1048 HOH HOH . 
N 4 HOH A 39 1049 1049 HOH HOH . 
N 4 HOH A 40 1050 1050 HOH HOH . 
N 4 HOH A 41 1051 1051 HOH HOH . 
O 4 HOH B 1 1013 1013 HOH HOH . 
O 4 HOH B 2 1014 1014 HOH HOH . 
O 4 HOH B 3 1015 1015 HOH HOH . 
O 4 HOH B 4 1016 1016 HOH HOH . 
O 4 HOH B 5 1017 1017 HOH HOH . 
O 4 HOH B 6 1018 1018 HOH HOH . 
O 4 HOH B 7 1019 1019 HOH HOH . 
O 4 HOH B 8 1020 1020 HOH HOH . 
O 4 HOH B 9 1021 1021 HOH HOH . 
O 4 HOH B 10 1022 1022 HOH HOH . 
O 4 HOH B 11 1023 1023 HOH HOH . 
O 4 HOH B 12 1024 1024 HOH HOH . 
O 4 HOH B 13 1025 1025 HOH HOH . 
O 4 HOH B 14 1026 1026 HOH HOH . 
O 4 HOH B 15 1027 1027 HOH HOH . 
O 4 HOH B 16 1028 1028 HOH HOH . 
O 4 HOH B 17 1029 1029 HOH HOH . 
O 4 HOH B 18 1030 1030 HOH HOH . 
O 4 HOH B 19 1031 1031 HOH HOH . 
O 4 HOH B 20 1032 1032 HOH HOH . 
O 4 HOH B 21 1033 1033 HOH HOH . 
O 4 HOH B 22 1034 1034 HOH HOH . 
O 4 HOH B 23 1035 1035 HOH HOH . 
O 4 HOH B 24 1036 1036 HOH HOH . 
O 4 HOH B 25 1037 1037 HOH HOH . 
O 4 HOH B 26 1038 1038 HOH HOH . 
O 4 HOH B 27 1039 1039 HOH HOH . 
O 4 HOH B 28 1040 1040 HOH HOH . 
O 4 HOH B 29 1041 1041 HOH HOH . 
O 4 HOH B 30 1042 1042 HOH HOH . 
O 4 HOH B 31 1043 1043 HOH HOH . 
O 4 HOH B 32 1044 1044 HOH HOH . 
O 4 HOH B 33 1045 1045 HOH HOH . 
O 4 HOH B 34 1046 1046 HOH HOH . 
O 4 HOH B 35 1047 1047 HOH HOH . 
O 4 HOH B 36 1048 1048 HOH HOH . 
O 4 HOH B 37 1049 1049 HOH HOH . 
O 4 HOH B 38 1050 1050 HOH HOH . 
P 4 HOH Z 1 115 115 HOH HOH . 
P 4 HOH Z 2 116 116 HOH HOH . 
P 4 HOH Z 3 119 119 HOH HOH . 
P 4 HOH Z 4 120 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . J 3 27.017 30.103 -10.293 1 54.8 ? S SO4 1002 B 1 
HETATM 2 O O1 SO4 . . . J 3 28.266 29.525 -10.8 1 52.44 ? O1 SO4 1002 B 1 
HETATM 3 O O2 SO4 . . . J 3 25.859 29.39 -10.844 1 53.18 ? O2 SO4 1002 B 1 
HETATM 4 O O3 SO4 . . . J 3 27.004 30.018 -8.833 1 53.14 ? O3 SO4 1002 B 1 
HETATM 5 O O4 SO4 . . . J 3 26.937 31.506 -10.691 1 55.81 ? O4 SO4 1002 B 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           5 
#