data_3D9K # _model_server_result.job_id U2iECjUN0x1WfO00tcB1zw _model_server_result.datetime_utc '2024-12-18 01:54:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1006}' # _entry.id 3D9K # _exptl.entry_id 3D9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D9K _cell.length_a 56.45 _cell.length_b 56.45 _cell.length_c 106.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,J,K,L,M,O,P 1 1 A,C,E,F,G,H,I,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C TYR 8 Y TYR 1 1_555 C N SEP 9 Y SEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 C C SEP 9 Y SEP 2 1_555 C N PRO 10 Y PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale3 D C TYR 1 Z TYR 1 1_555 D N SEP 2 Z SEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 D C SEP 2 Z SEP 2 1_555 D N PRO 3 Z PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale5 D C THR 4 Z THR 4 1_555 D N SEP 5 Z SEP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 D C SEP 5 Z SEP 5 1_555 D N PRO 6 Z PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale7 D C TYR 8 Z TYR 8 1_555 D N SEP 9 Z SEP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 308 n n S O2 SO4 doub 309 n n S O3 SO4 sing 310 n n S O4 SO4 sing 311 n n # _atom_sites.entry_id 3D9K _atom_sites.fract_transf_matrix[1][1] 0.017715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 1001 1001 SO4 SO4 . F 3 SO4 A 1 1003 1003 SO4 SO4 . G 3 SO4 A 1 1004 1004 SO4 SO4 . H 3 SO4 A 1 1008 1008 SO4 SO4 . I 3 SO4 A 1 1010 1010 SO4 SO4 . J 3 SO4 B 1 1002 1002 SO4 SO4 . K 3 SO4 B 1 1007 1007 SO4 SO4 . L 3 SO4 B 1 1012 1012 SO4 SO4 . M 3 SO4 Z 1 1006 1006 SO4 SO4 . N 4 HOH A 1 1011 1011 HOH HOH . N 4 HOH A 2 1012 1012 HOH HOH . N 4 HOH A 3 1013 1013 HOH HOH . N 4 HOH A 4 1014 1014 HOH HOH . N 4 HOH A 5 1015 1015 HOH HOH . N 4 HOH A 6 1016 1016 HOH HOH . N 4 HOH A 7 1017 1017 HOH HOH . N 4 HOH A 8 1018 1018 HOH HOH . N 4 HOH A 9 1019 1019 HOH HOH . N 4 HOH A 10 1020 1020 HOH HOH . N 4 HOH A 11 1021 1021 HOH HOH . N 4 HOH A 12 1022 1022 HOH HOH . N 4 HOH A 13 1023 1023 HOH HOH . N 4 HOH A 14 1024 1024 HOH HOH . N 4 HOH A 15 1025 1025 HOH HOH . N 4 HOH A 16 1026 1026 HOH HOH . N 4 HOH A 17 1027 1027 HOH HOH . N 4 HOH A 18 1028 1028 HOH HOH . N 4 HOH A 19 1029 1029 HOH HOH . N 4 HOH A 20 1030 1030 HOH HOH . N 4 HOH A 21 1031 1031 HOH HOH . N 4 HOH A 22 1032 1032 HOH HOH . N 4 HOH A 23 1033 1033 HOH HOH . N 4 HOH A 24 1034 1034 HOH HOH . N 4 HOH A 25 1035 1035 HOH HOH . N 4 HOH A 26 1036 1036 HOH HOH . N 4 HOH A 27 1037 1037 HOH HOH . N 4 HOH A 28 1038 1038 HOH HOH . N 4 HOH A 29 1039 1039 HOH HOH . N 4 HOH A 30 1040 1040 HOH HOH . N 4 HOH A 31 1041 1041 HOH HOH . N 4 HOH A 32 1042 1042 HOH HOH . N 4 HOH A 33 1043 1043 HOH HOH . N 4 HOH A 34 1044 1044 HOH HOH . N 4 HOH A 35 1045 1045 HOH HOH . N 4 HOH A 36 1046 1046 HOH HOH . N 4 HOH A 37 1047 1047 HOH HOH . N 4 HOH A 38 1048 1048 HOH HOH . N 4 HOH A 39 1049 1049 HOH HOH . N 4 HOH A 40 1050 1050 HOH HOH . N 4 HOH A 41 1051 1051 HOH HOH . O 4 HOH B 1 1013 1013 HOH HOH . O 4 HOH B 2 1014 1014 HOH HOH . O 4 HOH B 3 1015 1015 HOH HOH . O 4 HOH B 4 1016 1016 HOH HOH . O 4 HOH B 5 1017 1017 HOH HOH . O 4 HOH B 6 1018 1018 HOH HOH . O 4 HOH B 7 1019 1019 HOH HOH . O 4 HOH B 8 1020 1020 HOH HOH . O 4 HOH B 9 1021 1021 HOH HOH . O 4 HOH B 10 1022 1022 HOH HOH . O 4 HOH B 11 1023 1023 HOH HOH . O 4 HOH B 12 1024 1024 HOH HOH . O 4 HOH B 13 1025 1025 HOH HOH . O 4 HOH B 14 1026 1026 HOH HOH . O 4 HOH B 15 1027 1027 HOH HOH . O 4 HOH B 16 1028 1028 HOH HOH . O 4 HOH B 17 1029 1029 HOH HOH . O 4 HOH B 18 1030 1030 HOH HOH . O 4 HOH B 19 1031 1031 HOH HOH . O 4 HOH B 20 1032 1032 HOH HOH . O 4 HOH B 21 1033 1033 HOH HOH . O 4 HOH B 22 1034 1034 HOH HOH . O 4 HOH B 23 1035 1035 HOH HOH . O 4 HOH B 24 1036 1036 HOH HOH . O 4 HOH B 25 1037 1037 HOH HOH . O 4 HOH B 26 1038 1038 HOH HOH . O 4 HOH B 27 1039 1039 HOH HOH . O 4 HOH B 28 1040 1040 HOH HOH . O 4 HOH B 29 1041 1041 HOH HOH . O 4 HOH B 30 1042 1042 HOH HOH . O 4 HOH B 31 1043 1043 HOH HOH . O 4 HOH B 32 1044 1044 HOH HOH . O 4 HOH B 33 1045 1045 HOH HOH . O 4 HOH B 34 1046 1046 HOH HOH . O 4 HOH B 35 1047 1047 HOH HOH . O 4 HOH B 36 1048 1048 HOH HOH . O 4 HOH B 37 1049 1049 HOH HOH . O 4 HOH B 38 1050 1050 HOH HOH . P 4 HOH Z 1 115 115 HOH HOH . P 4 HOH Z 2 116 116 HOH HOH . P 4 HOH Z 3 119 119 HOH HOH . P 4 HOH Z 4 120 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . M 3 9.217 17.073 -8.616 1 65.64 ? S SO4 1006 Z 1 HETATM 2 O O1 SO4 . . . M 3 10.426 17.681 -8.066 1 66.42 ? O1 SO4 1006 Z 1 HETATM 3 O O2 SO4 . . . M 3 9.429 16.706 -10.015 1 64.83 ? O2 SO4 1006 Z 1 HETATM 4 O O3 SO4 . . . M 3 8.892 15.876 -7.85 1 65.74 ? O3 SO4 1006 Z 1 HETATM 5 O O4 SO4 . . . M 3 8.134 18.051 -8.504 1 66.21 ? O4 SO4 1006 Z 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #