data_3D9M
#
_model_server_result.job_id            jQmh2Hl95EHVMjfirUESuQ 
_model_server_result.datetime_utc      '2025-03-06 09:15:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d9m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":506}' 
#
_entry.id    3D9M 
#
_exptl.entry_id    3D9M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3D9M 
_cell.length_a            57.61 
_cell.length_b            57.61 
_cell.length_c            106.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D9M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,D,J,K,L,M,O,Q 1 1 
A,C,E,F,G,H,I,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C THR 11 Z THR 4 1_555 D N SEP 12 Z SEP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 D C SEP 12 Z SEP 5 1_555 D N PRO 13 Z PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 312 n n 
S O2 SO4 doub 313 n n 
S O3 SO4 sing 314 n n 
S O4 SO4 sing 315 n n 
#
_atom_sites.entry_id                     3D9M 
_atom_sites.fract_transf_matrix[1][1]    0.017358 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017358 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009383 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NH4 A 1 400 400 NH4 NH4 . 
F 4 SO4 A 1 501 501 SO4 SO4 . 
G 4 SO4 A 1 503 503 SO4 SO4 . 
H 4 SO4 A 1 507 507 SO4 SO4 . 
I 4 SO4 A 1 508 508 SO4 SO4 . 
J 3 NH4 B 1 401 401 NH4 NH4 . 
K 4 SO4 B 1 504 504 SO4 SO4 . 
L 4 SO4 B 1 506 506 SO4 SO4 . 
M 4 SO4 B 1 509 509 SO4 SO4 . 
N 5 HOH A 1 509 7 HOH HOH . 
N 5 HOH A 2 510 8 HOH HOH . 
N 5 HOH A 3 511 9 HOH HOH . 
N 5 HOH A 4 512 10 HOH HOH . 
N 5 HOH A 5 513 11 HOH HOH . 
N 5 HOH A 6 514 12 HOH HOH . 
N 5 HOH A 7 515 13 HOH HOH . 
N 5 HOH A 8 516 14 HOH HOH . 
N 5 HOH A 9 517 15 HOH HOH . 
N 5 HOH A 10 518 16 HOH HOH . 
N 5 HOH A 11 519 17 HOH HOH . 
N 5 HOH A 12 520 18 HOH HOH . 
N 5 HOH A 13 521 19 HOH HOH . 
N 5 HOH A 14 522 20 HOH HOH . 
N 5 HOH A 15 523 22 HOH HOH . 
N 5 HOH A 16 524 48 HOH HOH . 
N 5 HOH A 17 525 49 HOH HOH . 
N 5 HOH A 18 526 50 HOH HOH . 
N 5 HOH A 19 527 51 HOH HOH . 
N 5 HOH A 20 528 55 HOH HOH . 
N 5 HOH A 21 529 56 HOH HOH . 
N 5 HOH A 22 530 59 HOH HOH . 
N 5 HOH A 23 531 63 HOH HOH . 
N 5 HOH A 24 532 64 HOH HOH . 
N 5 HOH A 25 533 67 HOH HOH . 
N 5 HOH A 26 534 69 HOH HOH . 
N 5 HOH A 27 535 73 HOH HOH . 
N 5 HOH A 28 536 74 HOH HOH . 
N 5 HOH A 29 537 75 HOH HOH . 
N 5 HOH A 30 538 79 HOH HOH . 
N 5 HOH A 31 539 81 HOH HOH . 
N 5 HOH A 32 540 82 HOH HOH . 
N 5 HOH A 33 541 85 HOH HOH . 
N 5 HOH A 34 542 86 HOH HOH . 
N 5 HOH A 35 543 87 HOH HOH . 
N 5 HOH A 36 544 89 HOH HOH . 
N 5 HOH A 37 545 97 HOH HOH . 
N 5 HOH A 38 546 101 HOH HOH . 
N 5 HOH A 39 547 104 HOH HOH . 
N 5 HOH A 40 548 111 HOH HOH . 
N 5 HOH A 41 549 112 HOH HOH . 
N 5 HOH A 42 550 114 HOH HOH . 
N 5 HOH A 43 551 123 HOH HOH . 
N 5 HOH A 44 552 126 HOH HOH . 
N 5 HOH A 45 553 133 HOH HOH . 
N 5 HOH A 46 554 136 HOH HOH . 
N 5 HOH A 47 555 138 HOH HOH . 
N 5 HOH A 48 556 140 HOH HOH . 
N 5 HOH A 49 557 146 HOH HOH . 
N 5 HOH A 50 558 151 HOH HOH . 
N 5 HOH A 51 559 159 HOH HOH . 
N 5 HOH A 52 560 160 HOH HOH . 
N 5 HOH A 53 561 162 HOH HOH . 
N 5 HOH A 54 562 169 HOH HOH . 
N 5 HOH A 55 563 175 HOH HOH . 
N 5 HOH A 56 564 188 HOH HOH . 
N 5 HOH A 57 565 192 HOH HOH . 
N 5 HOH A 58 566 193 HOH HOH . 
N 5 HOH A 59 567 194 HOH HOH . 
N 5 HOH A 60 568 195 HOH HOH . 
N 5 HOH A 61 569 197 HOH HOH . 
N 5 HOH A 62 570 198 HOH HOH . 
N 5 HOH A 63 571 199 HOH HOH . 
N 5 HOH A 64 572 200 HOH HOH . 
N 5 HOH A 65 573 213 HOH HOH . 
N 5 HOH A 66 574 221 HOH HOH . 
N 5 HOH A 67 575 218 HOH HOH . 
N 5 HOH A 68 576 222 HOH HOH . 
N 5 HOH A 69 577 223 HOH HOH . 
N 5 HOH A 70 578 226 HOH HOH . 
N 5 HOH A 71 579 227 HOH HOH . 
N 5 HOH A 72 580 231 HOH HOH . 
N 5 HOH A 73 581 243 HOH HOH . 
O 5 HOH B 1 510 1 HOH HOH . 
O 5 HOH B 2 511 2 HOH HOH . 
O 5 HOH B 3 512 23 HOH HOH . 
O 5 HOH B 4 513 24 HOH HOH . 
O 5 HOH B 5 514 25 HOH HOH . 
O 5 HOH B 6 515 27 HOH HOH . 
O 5 HOH B 7 516 29 HOH HOH . 
O 5 HOH B 8 517 30 HOH HOH . 
O 5 HOH B 9 518 32 HOH HOH . 
O 5 HOH B 10 519 33 HOH HOH . 
O 5 HOH B 11 520 34 HOH HOH . 
O 5 HOH B 12 521 35 HOH HOH . 
O 5 HOH B 13 522 36 HOH HOH . 
O 5 HOH B 14 523 37 HOH HOH . 
O 5 HOH B 15 524 38 HOH HOH . 
O 5 HOH B 16 525 39 HOH HOH . 
O 5 HOH B 17 526 40 HOH HOH . 
O 5 HOH B 18 527 41 HOH HOH . 
O 5 HOH B 19 528 43 HOH HOH . 
O 5 HOH B 20 529 45 HOH HOH . 
O 5 HOH B 21 530 46 HOH HOH . 
O 5 HOH B 22 531 53 HOH HOH . 
O 5 HOH B 23 532 54 HOH HOH . 
O 5 HOH B 24 533 57 HOH HOH . 
O 5 HOH B 25 534 60 HOH HOH . 
O 5 HOH B 26 535 62 HOH HOH . 
O 5 HOH B 27 536 65 HOH HOH . 
O 5 HOH B 28 537 66 HOH HOH . 
O 5 HOH B 29 538 70 HOH HOH . 
O 5 HOH B 30 539 71 HOH HOH . 
O 5 HOH B 31 540 76 HOH HOH . 
O 5 HOH B 32 541 78 HOH HOH . 
O 5 HOH B 33 542 80 HOH HOH . 
O 5 HOH B 34 543 83 HOH HOH . 
O 5 HOH B 35 544 88 HOH HOH . 
O 5 HOH B 36 545 90 HOH HOH . 
O 5 HOH B 37 546 91 HOH HOH . 
O 5 HOH B 38 547 94 HOH HOH . 
O 5 HOH B 39 548 95 HOH HOH . 
O 5 HOH B 40 549 96 HOH HOH . 
O 5 HOH B 41 550 99 HOH HOH . 
O 5 HOH B 42 551 102 HOH HOH . 
O 5 HOH B 43 552 103 HOH HOH . 
O 5 HOH B 44 553 105 HOH HOH . 
O 5 HOH B 45 554 106 HOH HOH . 
O 5 HOH B 46 555 110 HOH HOH . 
O 5 HOH B 47 556 115 HOH HOH . 
O 5 HOH B 48 557 116 HOH HOH . 
O 5 HOH B 49 558 120 HOH HOH . 
O 5 HOH B 50 559 121 HOH HOH . 
O 5 HOH B 51 560 127 HOH HOH . 
O 5 HOH B 52 561 129 HOH HOH . 
O 5 HOH B 53 562 130 HOH HOH . 
O 5 HOH B 54 563 134 HOH HOH . 
O 5 HOH B 55 564 135 HOH HOH . 
O 5 HOH B 56 565 139 HOH HOH . 
O 5 HOH B 57 566 141 HOH HOH . 
O 5 HOH B 58 567 163 HOH HOH . 
O 5 HOH B 59 568 172 HOH HOH . 
O 5 HOH B 60 569 173 HOH HOH . 
O 5 HOH B 61 570 190 HOH HOH . 
O 5 HOH B 62 571 191 HOH HOH . 
O 5 HOH B 63 572 201 HOH HOH . 
O 5 HOH B 64 573 202 HOH HOH . 
O 5 HOH B 65 574 203 HOH HOH . 
O 5 HOH B 66 575 204 HOH HOH . 
O 5 HOH B 67 576 205 HOH HOH . 
O 5 HOH B 68 577 206 HOH HOH . 
O 5 HOH B 69 578 208 HOH HOH . 
O 5 HOH B 70 579 209 HOH HOH . 
O 5 HOH B 71 580 210 HOH HOH . 
O 5 HOH B 72 581 211 HOH HOH . 
O 5 HOH B 73 582 216 HOH HOH . 
O 5 HOH B 74 583 219 HOH HOH . 
O 5 HOH B 75 584 225 HOH HOH . 
O 5 HOH B 76 585 230 HOH HOH . 
O 5 HOH B 77 586 235 HOH HOH . 
O 5 HOH B 78 587 236 HOH HOH . 
O 5 HOH B 79 588 240 HOH HOH . 
O 5 HOH B 80 589 241 HOH HOH . 
O 5 HOH B 81 590 242 HOH HOH . 
P 5 HOH Y 1 144 144 HOH HOH . 
Q 5 HOH Z 1 26 26 HOH HOH . 
Q 5 HOH Z 2 47 47 HOH HOH . 
Q 5 HOH Z 3 212 212 HOH HOH . 
Q 5 HOH Z 4 232 232 HOH HOH . 
Q 5 HOH Z 5 233 233 HOH HOH . 
Q 5 HOH Z 6 237 237 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . L 4 10.014 17.394 -9.238 1 62.43 ? S SO4 506 B 1 
HETATM 2 O O1 SO4 . . . L 4 10.03 17.008 -10.649 1 61.94 ? O1 SO4 506 B 1 
HETATM 3 O O2 SO4 . . . L 4 9.126 16.509 -8.49 1 61.88 ? O2 SO4 506 B 1 
HETATM 4 O O3 SO4 . . . L 4 11.373 17.289 -8.716 1 62.46 ? O3 SO4 506 B 1 
HETATM 5 O O4 SO4 . . . L 4 9.548 18.774 -9.099 1 61.96 ? O4 SO4 506 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#