data_3D9N # _model_server_result.job_id vk-s-GW4PnVyf23BgrgGCw _model_server_result.datetime_utc '2025-03-06 09:33:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1111}' # _entry.id 3D9N # _exptl.entry_id 3D9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D9N _cell.length_a 57.53 _cell.length_b 57.53 _cell.length_c 106.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,O,Q 1 1 B,D,K,L,M,N,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C PRO 6 Y PRO -1 1_555 C N SEP 7 Y SEP 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 C C SEP 7 Y SEP 0 1_555 C N TYR 8 Y TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C TYR 8 Y TYR 1 1_555 C N SEP 9 Y SEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C SEP 9 Y SEP 2 1_555 C N PRO 10 Y PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale5 D C PRO 6 Z PRO -1 1_555 D N SEP 7 Z SEP 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 D C SEP 7 Z SEP 0 1_555 D N TYR 8 Z TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 D C TYR 8 Z TYR 1 1_555 D N SEP 9 Z SEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 D C SEP 9 Z SEP 2 1_555 D N PRO 10 Z PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 308 n n S O2 SO4 doub 309 n n S O3 SO4 sing 310 n n S O4 SO4 sing 311 n n # _atom_sites.entry_id 3D9N _atom_sites.fract_transf_matrix[1][1] 0.017382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 1004 1004 SO4 SO4 . F 3 SO4 A 1 1010 1010 SO4 SO4 . G 3 SO4 A 1 1112 1112 SO4 SO4 . H 3 SO4 A 1 1113 1113 SO4 SO4 . I 3 SO4 A 1 1114 1114 SO4 SO4 . J 3 SO4 A 1 1115 1115 SO4 SO4 . K 3 SO4 B 1 1007 1007 SO4 SO4 . L 3 SO4 B 1 1008 1008 SO4 SO4 . M 3 SO4 B 1 1009 1009 SO4 SO4 . N 3 SO4 B 1 1111 1111 SO4 SO4 . O 4 HOH A 1 1116 1 HOH HOH . O 4 HOH A 2 1117 3 HOH HOH . O 4 HOH A 3 1118 4 HOH HOH . O 4 HOH A 4 1119 5 HOH HOH . O 4 HOH A 5 1120 8 HOH HOH . O 4 HOH A 6 1121 9 HOH HOH . O 4 HOH A 7 1122 16 HOH HOH . O 4 HOH A 8 1123 18 HOH HOH . O 4 HOH A 9 1124 19 HOH HOH . O 4 HOH A 10 1125 23 HOH HOH . O 4 HOH A 11 1126 24 HOH HOH . O 4 HOH A 12 1127 25 HOH HOH . O 4 HOH A 13 1128 26 HOH HOH . O 4 HOH A 14 1129 27 HOH HOH . O 4 HOH A 15 1130 29 HOH HOH . O 4 HOH A 16 1131 32 HOH HOH . O 4 HOH A 17 1132 33 HOH HOH . O 4 HOH A 18 1133 37 HOH HOH . O 4 HOH A 19 1134 39 HOH HOH . O 4 HOH A 20 1135 44 HOH HOH . O 4 HOH A 21 1136 46 HOH HOH . O 4 HOH A 22 1137 47 HOH HOH . O 4 HOH A 23 1138 49 HOH HOH . O 4 HOH A 24 1139 50 HOH HOH . O 4 HOH A 25 1140 51 HOH HOH . O 4 HOH A 26 1141 54 HOH HOH . O 4 HOH A 27 1142 55 HOH HOH . O 4 HOH A 28 1143 57 HOH HOH . O 4 HOH A 29 1144 65 HOH HOH . O 4 HOH A 30 1145 80 HOH HOH . O 4 HOH A 31 1146 84 HOH HOH . O 4 HOH A 32 1147 88 HOH HOH . O 4 HOH A 33 1148 93 HOH HOH . O 4 HOH A 34 1149 100 HOH HOH . O 4 HOH A 35 1150 101 HOH HOH . O 4 HOH A 36 1151 104 HOH HOH . O 4 HOH A 37 1152 109 HOH HOH . O 4 HOH A 38 1153 111 HOH HOH . O 4 HOH A 39 1154 120 HOH HOH . O 4 HOH A 40 1155 121 HOH HOH . O 4 HOH A 41 1156 122 HOH HOH . O 4 HOH A 42 1157 124 HOH HOH . O 4 HOH A 43 1158 125 HOH HOH . O 4 HOH A 44 1159 126 HOH HOH . O 4 HOH A 45 1160 130 HOH HOH . O 4 HOH A 46 1161 135 HOH HOH . O 4 HOH A 47 1162 142 HOH HOH . O 4 HOH A 48 1163 144 HOH HOH . O 4 HOH A 49 1164 145 HOH HOH . O 4 HOH A 50 1165 156 HOH HOH . O 4 HOH A 51 1166 162 HOH HOH . O 4 HOH A 52 1167 175 HOH HOH . O 4 HOH A 53 1168 179 HOH HOH . O 4 HOH A 54 1169 180 HOH HOH . O 4 HOH A 55 1170 181 HOH HOH . O 4 HOH A 56 1171 182 HOH HOH . O 4 HOH A 57 1172 185 HOH HOH . O 4 HOH A 58 1173 186 HOH HOH . O 4 HOH A 59 1174 193 HOH HOH . O 4 HOH A 60 1175 196 HOH HOH . O 4 HOH A 61 1176 197 HOH HOH . O 4 HOH A 62 1177 199 HOH HOH . O 4 HOH A 63 1178 201 HOH HOH . O 4 HOH A 64 1179 204 HOH HOH . O 4 HOH A 65 1180 207 HOH HOH . O 4 HOH A 66 1181 212 HOH HOH . O 4 HOH A 67 1182 216 HOH HOH . O 4 HOH A 68 1183 217 HOH HOH . O 4 HOH A 69 1184 222 HOH HOH . O 4 HOH A 70 1185 223 HOH HOH . O 4 HOH A 71 1186 230 HOH HOH . O 4 HOH A 72 1187 235 HOH HOH . O 4 HOH A 73 1188 240 HOH HOH . O 4 HOH A 74 1189 242 HOH HOH . O 4 HOH A 75 1190 246 HOH HOH . O 4 HOH A 76 1191 248 HOH HOH . O 4 HOH A 77 1192 251 HOH HOH . O 4 HOH A 78 1193 252 HOH HOH . O 4 HOH A 79 1194 254 HOH HOH . O 4 HOH A 80 1195 262 HOH HOH . O 4 HOH A 81 1196 282 HOH HOH . O 4 HOH A 82 1197 284 HOH HOH . O 4 HOH A 83 1198 316 HOH HOH . O 4 HOH A 84 1199 317 HOH HOH . O 4 HOH A 85 1200 318 HOH HOH . O 4 HOH A 86 1201 334 HOH HOH . O 4 HOH A 87 1202 346 HOH HOH . O 4 HOH A 88 1203 347 HOH HOH . O 4 HOH A 89 1204 349 HOH HOH . O 4 HOH A 90 1205 350 HOH HOH . O 4 HOH A 91 1206 354 HOH HOH . O 4 HOH A 92 1207 361 HOH HOH . O 4 HOH A 93 1208 365 HOH HOH . O 4 HOH A 94 1209 366 HOH HOH . O 4 HOH A 95 1210 367 HOH HOH . O 4 HOH A 96 1211 370 HOH HOH . O 4 HOH A 97 1212 372 HOH HOH . O 4 HOH A 98 1213 373 HOH HOH . O 4 HOH A 99 1214 375 HOH HOH . O 4 HOH A 100 1215 376 HOH HOH . O 4 HOH A 101 1216 378 HOH HOH . O 4 HOH A 102 1217 379 HOH HOH . O 4 HOH A 103 1218 382 HOH HOH . O 4 HOH A 104 1219 384 HOH HOH . O 4 HOH A 105 1220 386 HOH HOH . O 4 HOH A 106 1221 387 HOH HOH . O 4 HOH A 107 1222 391 HOH HOH . O 4 HOH A 108 1223 392 HOH HOH . O 4 HOH A 109 1224 396 HOH HOH . O 4 HOH A 110 1225 397 HOH HOH . O 4 HOH A 111 1226 398 HOH HOH . O 4 HOH A 112 1227 399 HOH HOH . O 4 HOH A 113 1228 400 HOH HOH . O 4 HOH A 114 1229 410 HOH HOH . P 4 HOH B 1 1112 15 HOH HOH . P 4 HOH B 2 1113 17 HOH HOH . P 4 HOH B 3 1114 22 HOH HOH . P 4 HOH B 4 1115 28 HOH HOH . P 4 HOH B 5 1116 30 HOH HOH . P 4 HOH B 6 1117 31 HOH HOH . P 4 HOH B 7 1118 34 HOH HOH . P 4 HOH B 8 1119 35 HOH HOH . P 4 HOH B 9 1120 36 HOH HOH . P 4 HOH B 10 1121 38 HOH HOH . P 4 HOH B 11 1122 40 HOH HOH . P 4 HOH B 12 1123 41 HOH HOH . P 4 HOH B 13 1124 42 HOH HOH . P 4 HOH B 14 1125 43 HOH HOH . P 4 HOH B 15 1126 45 HOH HOH . P 4 HOH B 16 1127 52 HOH HOH . P 4 HOH B 17 1128 56 HOH HOH . P 4 HOH B 18 1129 58 HOH HOH . P 4 HOH B 19 1130 59 HOH HOH . P 4 HOH B 20 1131 60 HOH HOH . P 4 HOH B 21 1132 61 HOH HOH . P 4 HOH B 22 1133 62 HOH HOH . P 4 HOH B 23 1134 68 HOH HOH . P 4 HOH B 24 1135 71 HOH HOH . P 4 HOH B 25 1136 74 HOH HOH . P 4 HOH B 26 1137 77 HOH HOH . P 4 HOH B 27 1138 79 HOH HOH . P 4 HOH B 28 1139 85 HOH HOH . P 4 HOH B 29 1140 86 HOH HOH . P 4 HOH B 30 1141 90 HOH HOH . P 4 HOH B 31 1142 91 HOH HOH . P 4 HOH B 32 1143 92 HOH HOH . P 4 HOH B 33 1144 99 HOH HOH . P 4 HOH B 34 1145 105 HOH HOH . P 4 HOH B 35 1146 106 HOH HOH . P 4 HOH B 36 1147 107 HOH HOH . P 4 HOH B 37 1148 108 HOH HOH . P 4 HOH B 38 1149 110 HOH HOH . P 4 HOH B 39 1150 113 HOH HOH . P 4 HOH B 40 1151 114 HOH HOH . P 4 HOH B 41 1152 117 HOH HOH . P 4 HOH B 42 1153 123 HOH HOH . P 4 HOH B 43 1154 127 HOH HOH . P 4 HOH B 44 1155 128 HOH HOH . P 4 HOH B 45 1156 129 HOH HOH . P 4 HOH B 46 1157 138 HOH HOH . P 4 HOH B 47 1158 148 HOH HOH . P 4 HOH B 48 1159 150 HOH HOH . P 4 HOH B 49 1160 152 HOH HOH . P 4 HOH B 50 1161 157 HOH HOH . P 4 HOH B 51 1162 166 HOH HOH . P 4 HOH B 52 1163 177 HOH HOH . P 4 HOH B 53 1164 183 HOH HOH . P 4 HOH B 54 1165 184 HOH HOH . P 4 HOH B 55 1166 189 HOH HOH . P 4 HOH B 56 1167 191 HOH HOH . P 4 HOH B 57 1168 192 HOH HOH . P 4 HOH B 58 1169 200 HOH HOH . P 4 HOH B 59 1170 205 HOH HOH . P 4 HOH B 60 1171 210 HOH HOH . P 4 HOH B 61 1172 211 HOH HOH . P 4 HOH B 62 1173 213 HOH HOH . P 4 HOH B 63 1174 214 HOH HOH . P 4 HOH B 64 1175 219 HOH HOH . P 4 HOH B 65 1176 224 HOH HOH . P 4 HOH B 66 1177 226 HOH HOH . P 4 HOH B 67 1178 227 HOH HOH . P 4 HOH B 68 1179 229 HOH HOH . P 4 HOH B 69 1180 234 HOH HOH . P 4 HOH B 70 1181 236 HOH HOH . P 4 HOH B 71 1182 250 HOH HOH . P 4 HOH B 72 1183 255 HOH HOH . P 4 HOH B 73 1184 256 HOH HOH . P 4 HOH B 74 1185 257 HOH HOH . P 4 HOH B 75 1186 258 HOH HOH . P 4 HOH B 76 1187 259 HOH HOH . P 4 HOH B 77 1188 260 HOH HOH . P 4 HOH B 78 1189 263 HOH HOH . P 4 HOH B 79 1190 266 HOH HOH . P 4 HOH B 80 1191 286 HOH HOH . P 4 HOH B 81 1192 287 HOH HOH . P 4 HOH B 82 1193 309 HOH HOH . P 4 HOH B 83 1194 315 HOH HOH . P 4 HOH B 84 1195 320 HOH HOH . P 4 HOH B 85 1196 321 HOH HOH . P 4 HOH B 86 1197 322 HOH HOH . P 4 HOH B 87 1198 325 HOH HOH . P 4 HOH B 88 1199 326 HOH HOH . P 4 HOH B 89 1200 327 HOH HOH . P 4 HOH B 90 1201 328 HOH HOH . P 4 HOH B 91 1202 329 HOH HOH . P 4 HOH B 92 1203 330 HOH HOH . P 4 HOH B 93 1204 331 HOH HOH . P 4 HOH B 94 1205 340 HOH HOH . P 4 HOH B 95 1206 344 HOH HOH . P 4 HOH B 96 1207 345 HOH HOH . P 4 HOH B 97 1208 351 HOH HOH . P 4 HOH B 98 1209 352 HOH HOH . P 4 HOH B 99 1210 353 HOH HOH . P 4 HOH B 100 1211 355 HOH HOH . P 4 HOH B 101 1212 356 HOH HOH . P 4 HOH B 102 1213 357 HOH HOH . P 4 HOH B 103 1214 358 HOH HOH . P 4 HOH B 104 1215 360 HOH HOH . P 4 HOH B 105 1216 362 HOH HOH . P 4 HOH B 106 1217 363 HOH HOH . P 4 HOH B 107 1218 364 HOH HOH . P 4 HOH B 108 1219 368 HOH HOH . P 4 HOH B 109 1220 369 HOH HOH . P 4 HOH B 110 1221 371 HOH HOH . P 4 HOH B 111 1222 380 HOH HOH . P 4 HOH B 112 1223 381 HOH HOH . P 4 HOH B 113 1224 383 HOH HOH . P 4 HOH B 114 1225 385 HOH HOH . P 4 HOH B 115 1226 388 HOH HOH . P 4 HOH B 116 1227 389 HOH HOH . P 4 HOH B 117 1228 390 HOH HOH . P 4 HOH B 118 1229 393 HOH HOH . P 4 HOH B 119 1230 394 HOH HOH . P 4 HOH B 120 1231 395 HOH HOH . P 4 HOH B 121 1232 401 HOH HOH . P 4 HOH B 122 1233 402 HOH HOH . P 4 HOH B 123 1234 407 HOH HOH . P 4 HOH B 124 1235 408 HOH HOH . Q 4 HOH Y 1 338 338 HOH HOH . Q 4 HOH Y 2 359 359 HOH HOH . Q 4 HOH Y 3 403 403 HOH HOH . R 4 HOH Z 1 341 341 HOH HOH . R 4 HOH Z 2 404 404 HOH HOH . R 4 HOH Z 3 405 405 HOH HOH . R 4 HOH Z 4 406 406 HOH HOH . R 4 HOH Z 5 409 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . N 3 17.857 2.47 -10.805 1 48.85 ? S SO4 1111 B 1 HETATM 2 O O1 SO4 . . . N 3 18.985 3.21 -11.344 1 47.78 ? O1 SO4 1111 B 1 HETATM 3 O O2 SO4 . . . N 3 16.605 3.124 -11.197 1 49.33 ? O2 SO4 1111 B 1 HETATM 4 O O3 SO4 . . . N 3 17.865 1.103 -11.339 1 49.02 ? O3 SO4 1111 B 1 HETATM 5 O O4 SO4 . . . N 3 17.951 2.43 -9.34 1 48.45 ? O4 SO4 1111 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #