data_3D9O # _model_server_result.job_id D6E1S-LiKdXjgoMPrwLjOQ _model_server_result.datetime_utc '2024-10-12 19:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d9o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 3D9O # _exptl.entry_id 3D9O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 18.038 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMMONIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3D9O _cell.length_a 57.444 _cell.length_b 57.444 _cell.length_c 107.675 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,H,I,J,K,M,N 1 1 A,D,E,F,G,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 14 A LEU 14 1_555 A N MSE 15 A MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 15 A MSE 15 1_555 A N ASP 16 A ASP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ASP 16 A ASP 16 1_555 A N MSE 17 A MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 17 A MSE 17 1_555 A N LYS 18 A LYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 A C LYS 25 A LYS 25 1_555 A N MSE 26 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 26 A MSE 26 1_555 A N THR 27 A THR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C ASP 133 A ASP 133 1_555 A N MSE 134 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 134 A MSE 134 1_555 A N ALA 135 A ALA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 B C MSE 1 B MSE 1 1_555 B N GLU 2 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 B C LEU 14 B LEU 14 1_555 B N MSE 15 B MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C MSE 15 B MSE 15 1_555 B N ASP 16 B ASP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 B C ASP 16 B ASP 16 1_555 B N MSE 17 B MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 B C MSE 17 B MSE 17 1_555 B N LYS 18 B LYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C LYS 25 B LYS 25 1_555 B N MSE 26 B MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 B C MSE 26 B MSE 26 1_555 B N THR 27 B THR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C ASP 133 B ASP 133 1_555 B N MSE 134 B MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 B C MSE 134 B MSE 134 1_555 B N ALA 135 B ALA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'H4 N 1' _chem_comp.formula_weight 18.038 _chem_comp.id NH4 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMMONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH4 sing 237 n n N HN2 NH4 sing 238 n n N HN3 NH4 sing 239 n n N HN4 NH4 sing 240 n n # _atom_sites.entry_id 3D9O _atom_sites.fract_transf_matrix[1][1] 0.017408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NH4 A 1 401 401 NH4 NH4 . E 4 SO4 A 1 500 500 SO4 SO4 . F 4 SO4 A 1 501 501 SO4 SO4 . G 4 SO4 A 1 502 502 SO4 SO4 . H 3 NH4 B 1 402 402 NH4 NH4 . I 4 SO4 B 1 504 504 SO4 SO4 . J 4 SO4 B 1 505 505 SO4 SO4 . K 4 SO4 Z 1 507 507 SO4 SO4 . L 5 HOH A 1 503 503 HOH HOH . L 5 HOH A 2 504 504 HOH HOH . L 5 HOH A 3 505 505 HOH HOH . L 5 HOH A 4 506 506 HOH HOH . L 5 HOH A 5 507 507 HOH HOH . L 5 HOH A 6 508 508 HOH HOH . L 5 HOH A 7 509 509 HOH HOH . L 5 HOH A 8 510 510 HOH HOH . L 5 HOH A 9 511 511 HOH HOH . L 5 HOH A 10 512 512 HOH HOH . L 5 HOH A 11 513 513 HOH HOH . L 5 HOH A 12 514 514 HOH HOH . L 5 HOH A 13 515 515 HOH HOH . L 5 HOH A 14 516 516 HOH HOH . L 5 HOH A 15 517 517 HOH HOH . L 5 HOH A 16 518 518 HOH HOH . L 5 HOH A 17 519 519 HOH HOH . L 5 HOH A 18 520 520 HOH HOH . L 5 HOH A 19 521 521 HOH HOH . L 5 HOH A 20 522 522 HOH HOH . L 5 HOH A 21 523 523 HOH HOH . L 5 HOH A 22 524 524 HOH HOH . L 5 HOH A 23 525 525 HOH HOH . L 5 HOH A 24 526 526 HOH HOH . L 5 HOH A 25 527 527 HOH HOH . L 5 HOH A 26 528 528 HOH HOH . L 5 HOH A 27 529 529 HOH HOH . L 5 HOH A 28 530 530 HOH HOH . L 5 HOH A 29 531 531 HOH HOH . L 5 HOH A 30 532 532 HOH HOH . L 5 HOH A 31 533 533 HOH HOH . L 5 HOH A 32 534 534 HOH HOH . L 5 HOH A 33 535 535 HOH HOH . L 5 HOH A 34 536 536 HOH HOH . L 5 HOH A 35 537 537 HOH HOH . L 5 HOH A 36 538 538 HOH HOH . L 5 HOH A 37 539 539 HOH HOH . L 5 HOH A 38 540 540 HOH HOH . L 5 HOH A 39 541 541 HOH HOH . L 5 HOH A 40 542 542 HOH HOH . L 5 HOH A 41 543 543 HOH HOH . L 5 HOH A 42 544 544 HOH HOH . L 5 HOH A 43 545 545 HOH HOH . L 5 HOH A 44 546 546 HOH HOH . L 5 HOH A 45 547 547 HOH HOH . L 5 HOH A 46 548 548 HOH HOH . L 5 HOH A 47 549 549 HOH HOH . L 5 HOH A 48 550 550 HOH HOH . L 5 HOH A 49 551 551 HOH HOH . L 5 HOH A 50 552 552 HOH HOH . L 5 HOH A 51 553 553 HOH HOH . L 5 HOH A 52 554 554 HOH HOH . L 5 HOH A 53 555 555 HOH HOH . L 5 HOH A 54 556 556 HOH HOH . L 5 HOH A 55 557 557 HOH HOH . L 5 HOH A 56 558 558 HOH HOH . L 5 HOH A 57 559 559 HOH HOH . M 5 HOH B 1 506 506 HOH HOH . M 5 HOH B 2 507 507 HOH HOH . M 5 HOH B 3 508 508 HOH HOH . M 5 HOH B 4 509 509 HOH HOH . M 5 HOH B 5 510 510 HOH HOH . M 5 HOH B 6 511 511 HOH HOH . M 5 HOH B 7 512 512 HOH HOH . M 5 HOH B 8 513 513 HOH HOH . M 5 HOH B 9 514 514 HOH HOH . M 5 HOH B 10 515 515 HOH HOH . M 5 HOH B 11 516 516 HOH HOH . M 5 HOH B 12 517 517 HOH HOH . M 5 HOH B 13 518 518 HOH HOH . M 5 HOH B 14 519 519 HOH HOH . M 5 HOH B 15 520 520 HOH HOH . M 5 HOH B 16 521 521 HOH HOH . M 5 HOH B 17 522 522 HOH HOH . M 5 HOH B 18 523 523 HOH HOH . M 5 HOH B 19 524 524 HOH HOH . M 5 HOH B 20 525 525 HOH HOH . M 5 HOH B 21 526 526 HOH HOH . M 5 HOH B 22 527 527 HOH HOH . M 5 HOH B 23 528 528 HOH HOH . M 5 HOH B 24 529 529 HOH HOH . M 5 HOH B 25 530 530 HOH HOH . M 5 HOH B 26 531 531 HOH HOH . M 5 HOH B 27 532 532 HOH HOH . M 5 HOH B 28 533 533 HOH HOH . M 5 HOH B 29 534 534 HOH HOH . M 5 HOH B 30 535 535 HOH HOH . M 5 HOH B 31 536 536 HOH HOH . M 5 HOH B 32 537 537 HOH HOH . M 5 HOH B 33 538 538 HOH HOH . M 5 HOH B 34 539 539 HOH HOH . M 5 HOH B 35 540 540 HOH HOH . M 5 HOH B 36 541 541 HOH HOH . M 5 HOH B 37 542 542 HOH HOH . M 5 HOH B 38 543 543 HOH HOH . M 5 HOH B 39 544 544 HOH HOH . M 5 HOH B 40 545 545 HOH HOH . M 5 HOH B 41 546 546 HOH HOH . M 5 HOH B 42 547 547 HOH HOH . M 5 HOH B 43 548 548 HOH HOH . M 5 HOH B 44 549 549 HOH HOH . M 5 HOH B 45 550 550 HOH HOH . M 5 HOH B 46 551 551 HOH HOH . M 5 HOH B 47 552 552 HOH HOH . M 5 HOH B 48 553 553 HOH HOH . M 5 HOH B 49 554 554 HOH HOH . M 5 HOH B 50 555 555 HOH HOH . M 5 HOH B 51 556 556 HOH HOH . M 5 HOH B 52 557 557 HOH HOH . M 5 HOH B 53 558 558 HOH HOH . M 5 HOH B 54 559 559 HOH HOH . M 5 HOH B 55 560 560 HOH HOH . M 5 HOH B 56 561 561 HOH HOH . M 5 HOH B 57 562 562 HOH HOH . M 5 HOH B 58 563 563 HOH HOH . M 5 HOH B 59 564 564 HOH HOH . M 5 HOH B 60 565 565 HOH HOH . M 5 HOH B 61 566 566 HOH HOH . M 5 HOH B 62 567 567 HOH HOH . M 5 HOH B 63 568 568 HOH HOH . M 5 HOH B 64 569 569 HOH HOH . M 5 HOH B 65 570 570 HOH HOH . M 5 HOH B 66 571 571 HOH HOH . N 5 HOH Z 1 53 53 HOH HOH . N 5 HOH Z 2 87 87 HOH HOH . N 5 HOH Z 3 95 95 HOH HOH . N 5 HOH Z 4 113 113 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id NH4 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.198 _atom_site.Cartn_y 27.063 _atom_site.Cartn_z -4.714 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id NH4 _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #