data_3D9V # _model_server_result.job_id cHB9naAXgyKjhMKZwW2KDw _model_server_result.datetime_utc '2024-11-23 23:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":416}' # _entry.id 3D9V # _exptl.entry_id 3D9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 319.422 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]-HOMOPIPERAZINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3D9V _cell.length_a 183.625 _cell.length_b 183.625 _cell.length_c 91.666 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H21 N3 O2 S' _chem_comp.formula_weight 319.422 _chem_comp.id H52 _chem_comp.mon_nstd_flag . _chem_comp.name (S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]-HOMOPIPERAZINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 S5 H52 doub 129 n n S5 O2 H52 doub 130 n n S5 N21 H52 sing 131 n n S5 C5 H52 sing 132 n n N21 C22 H52 sing 133 n n N21 C27 H52 sing 134 n n C22 C2M H52 sing 135 n n C22 C23 H52 sing 136 n n C22 H22 H52 sing 137 n n C2M H2M1 H52 sing 138 n n C2M H2M2 H52 sing 139 n n C2M H2M3 H52 sing 140 n n C23 N24 H52 sing 141 n n C23 H231 H52 sing 142 n n C23 H232 H52 sing 143 n n N24 C25 H52 sing 144 n n N24 H24 H52 sing 145 n n C25 C26 H52 sing 146 n n C25 H251 H52 sing 147 n n C25 H252 H52 sing 148 n n C26 C27 H52 sing 149 n n C26 H261 H52 sing 150 n n C26 H262 H52 sing 151 n n C27 H271 H52 sing 152 n n C27 H272 H52 sing 153 n n C5 C10 H52 doub 154 n y C5 C6 H52 sing 155 n y C10 C4 H52 sing 156 n y C10 C9 H52 sing 157 n y C4 CM H52 sing 158 n n C4 C3 H52 doub 159 n y CM HM1 H52 sing 160 n n CM HM2 H52 sing 161 n n CM HM3 H52 sing 162 n n C9 C8 H52 doub 163 n y C9 C1 H52 sing 164 n y C8 C7 H52 sing 165 n y C8 H8 H52 sing 166 n n C7 C6 H52 doub 167 n y C7 H7 H52 sing 168 n n C6 H6 H52 sing 169 n n C1 N2 H52 doub 170 n y C1 H1 H52 sing 171 n n N2 C3 H52 sing 172 n y C3 H3 H52 sing 173 n n # _atom_sites.entry_id 3D9V _atom_sites.fract_transf_matrix[1][1] 0.005446 _atom_sites.fract_transf_matrix[1][2] 0.003144 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H52 A 1 416 1 H52 H52 . D 2 H52 B 1 416 2 H52 H52 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 H52 . . . D 2 -2.253 139.268 20.361 1 28.26 ? O1 H52 416 B 1 HETATM 2 S S5 H52 . . . D 2 -0.997 138.906 20.965 1 33.02 ? S5 H52 416 B 1 HETATM 3 O O2 H52 . . . D 2 -0.059 139.874 21.476 1 26.96 ? O2 H52 416 B 1 HETATM 4 N N21 H52 . . . D 2 -1.417 137.913 22.25 1 22.33 ? N21 H52 416 B 1 HETATM 5 C C22 H52 . . . D 2 -2.712 137.204 22.25 1 22.14 ? C22 H52 416 B 1 HETATM 6 C C2M H52 . . . D 2 -2.777 136.084 21.211 1 23.23 ? C2M H52 416 B 1 HETATM 7 C C23 H52 . . . D 2 -3.26 136.637 23.587 1 25.41 ? C23 H52 416 B 1 HETATM 8 N N24 H52 . . . D 2 -3.276 137.711 24.632 1 28.61 ? N24 H52 416 B 1 HETATM 9 C C25 H52 . . . D 2 -2.038 137.797 25.382 1 27.69 ? C25 H52 416 B 1 HETATM 10 C C26 H52 . . . D 2 -1.053 138.6 24.52 1 26.2 ? C26 H52 416 B 1 HETATM 11 C C27 H52 . . . D 2 -0.456 137.804 23.43 1 24.79 ? C27 H52 416 B 1 HETATM 12 C C5 H52 . . . D 2 -0.106 137.97 19.728 1 23.68 ? C5 H52 416 B 1 HETATM 13 C C10 H52 . . . D 2 0.153 138.477 18.362 1 22.19 ? C10 H52 416 B 1 HETATM 14 C C4 H52 . . . D 2 -0.192 139.837 17.856 1 24.19 ? C4 H52 416 B 1 HETATM 15 C CM H52 . . . D 2 -0.919 140.93 18.636 1 24.05 ? CM H52 416 B 1 HETATM 16 C C9 H52 . . . D 2 0.894 137.575 17.444 1 24.94 ? C9 H52 416 B 1 HETATM 17 C C8 H52 . . . D 2 1.273 136.254 17.851 1 25.63 ? C8 H52 416 B 1 HETATM 18 C C7 H52 . . . D 2 0.996 135.826 19.143 1 25.61 ? C7 H52 416 B 1 HETATM 19 C C6 H52 . . . D 2 0.304 136.668 20.058 1 23.87 ? C6 H52 416 B 1 HETATM 20 C C1 H52 . . . D 2 1.162 138.025 16.121 1 26.08 ? C1 H52 416 B 1 HETATM 21 N N2 H52 . . . D 2 0.792 139.26 15.738 1 27.57 ? N2 H52 416 B 1 HETATM 22 C C3 H52 . . . D 2 0.136 140.133 16.547 1 27.05 ? C3 H52 416 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #