data_3DA1 # _model_server_result.job_id MptPAwAqXCGBIhzMF3NRCA _model_server_result.datetime_utc '2024-10-19 10:23:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3da1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":609}' # _entry.id 3DA1 # _exptl.entry_id 3DA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DA1 _cell.length_a 52.767 _cell.length_b 96.953 _cell.length_c 226.057 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C GLU 13 A GLU 13 1_555 A N MSE 14 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C MSE 14 A MSE 14 1_555 A N SER 15 A SER 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C GLU 48 A GLU 48 1_555 A N MSE 49 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 49 A MSE 49 1_555 A N ASN 50 A ASN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C TRP 101 A TRP 101 1_555 A N MSE 102 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C MSE 102 A MSE 102 1_555 A N LEU 103 A LEU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C TYR 137 A TYR 137 1_555 A N MSE 138 A MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C MSE 138 A MSE 138 1_555 A N LEU 139 A LEU 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C ILE 176 A ILE 176 1_555 A N MSE 177 A MSE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C MSE 177 A MSE 177 1_555 A N LYS 178 A LYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C TYR 190 A TYR 190 1_555 A N MSE 191 A MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 A C MSE 191 A MSE 191 1_555 A N LYS 192 A LYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C ARG 277 A ARG 277 1_555 A N MSE 278 A MSE 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C MSE 278 A MSE 278 1_555 A N ILE 279 A ILE 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 A C ARG 305 A ARG 305 1_555 A N MSE 306 A MSE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C MSE 306 A MSE 306 1_555 A N THR 307 A THR 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 A C TYR 320 A TYR 320 1_555 A N MSE 321 A MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 A C MSE 321 A MSE 321 1_555 A N PHE 322 A PHE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 A C LYS 379 A LYS 379 1_555 A N MSE 380 A MSE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 A C MSE 380 A MSE 380 1_555 A N ALA 381 A ALA 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 A C GLU 482 A GLU 482 1_555 A N MSE 483 A MSE 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale23 A C MSE 483 A MSE 483 1_555 A N VAL 484 A VAL 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 A C TRP 515 A TRP 515 1_555 A N MSE 516 A MSE 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale25 A C MSE 516 A MSE 516 1_555 A N ALA 517 A ALA 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 A C LYS 539 A LYS 539 1_555 A N MSE 540 A MSE 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale27 A C MSE 540 A MSE 540 1_555 A N ALA 541 A ALA 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DA1 _atom_sites.fract_transf_matrix[1][1] 0.018951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 609 609 FAD FAD . C 3 HOH A 1 610 1 HOH WAT . C 3 HOH A 2 611 2 HOH WAT . C 3 HOH A 3 612 3 HOH WAT . C 3 HOH A 4 613 4 HOH WAT . C 3 HOH A 5 614 5 HOH WAT . C 3 HOH A 6 615 6 HOH WAT . C 3 HOH A 7 616 7 HOH WAT . C 3 HOH A 8 617 8 HOH WAT . C 3 HOH A 9 618 9 HOH WAT . C 3 HOH A 10 619 10 HOH WAT . C 3 HOH A 11 620 11 HOH WAT . C 3 HOH A 12 621 12 HOH WAT . C 3 HOH A 13 622 13 HOH WAT . C 3 HOH A 14 623 14 HOH WAT . C 3 HOH A 15 624 15 HOH WAT . C 3 HOH A 16 625 16 HOH WAT . C 3 HOH A 17 626 17 HOH WAT . C 3 HOH A 18 627 18 HOH WAT . C 3 HOH A 19 628 19 HOH WAT . C 3 HOH A 20 629 20 HOH WAT . C 3 HOH A 21 630 21 HOH WAT . C 3 HOH A 22 631 22 HOH WAT . C 3 HOH A 23 632 23 HOH WAT . C 3 HOH A 24 633 24 HOH WAT . C 3 HOH A 25 634 25 HOH WAT . C 3 HOH A 26 635 26 HOH WAT . C 3 HOH A 27 636 27 HOH WAT . C 3 HOH A 28 637 28 HOH WAT . C 3 HOH A 29 638 29 HOH WAT . C 3 HOH A 30 639 30 HOH WAT . C 3 HOH A 31 640 31 HOH WAT . C 3 HOH A 32 641 32 HOH WAT . C 3 HOH A 33 642 33 HOH WAT . C 3 HOH A 34 643 34 HOH WAT . C 3 HOH A 35 644 35 HOH WAT . C 3 HOH A 36 645 36 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 30.091 40.101 78.711 1 55.19 ? PA FAD 609 A 1 HETATM 2 O O1A FAD . . . B 2 30.211 41.064 79.832 1 51.34 ? O1A FAD 609 A 1 HETATM 3 O O2A FAD . . . B 2 28.807 39.172 79.013 1 53.86 ? O2A FAD 609 A 1 HETATM 4 O O5B FAD . . . B 2 29.92 40.895 77.307 1 55.56 ? O5B FAD 609 A 1 HETATM 5 C C5B FAD . . . B 2 28.787 41.74 77.386 1 56.12 ? C5B FAD 609 A 1 HETATM 6 C C4B FAD . . . B 2 28.734 42.557 76.108 1 56.22 ? C4B FAD 609 A 1 HETATM 7 O O4B FAD . . . B 2 28.633 41.818 74.835 1 53.41 ? O4B FAD 609 A 1 HETATM 8 C C3B FAD . . . B 2 27.565 43.557 76.155 1 57.25 ? C3B FAD 609 A 1 HETATM 9 O O3B FAD . . . B 2 28.054 44.89 76.353 1 59.36 ? O3B FAD 609 A 1 HETATM 10 C C2B FAD . . . B 2 26.872 43.372 74.799 1 55.95 ? C2B FAD 609 A 1 HETATM 11 O O2B FAD . . . B 2 26.405 44.641 74.343 1 57.92 ? O2B FAD 609 A 1 HETATM 12 C C1B FAD . . . B 2 28.002 42.783 73.934 1 53.92 ? C1B FAD 609 A 1 HETATM 13 N N9A FAD . . . B 2 27.429 42.183 72.702 1 50.47 ? N9A FAD 609 A 1 HETATM 14 C C8A FAD . . . B 2 26.522 41.164 72.615 1 49.19 ? C8A FAD 609 A 1 HETATM 15 N N7A FAD . . . B 2 26.239 40.907 71.375 1 48.12 ? N7A FAD 609 A 1 HETATM 16 C C5A FAD . . . B 2 26.922 41.74 70.562 1 49.8 ? C5A FAD 609 A 1 HETATM 17 C C6A FAD . . . B 2 27.027 41.932 69.125 1 50.23 ? C6A FAD 609 A 1 HETATM 18 N N6A FAD . . . B 2 26.295 41.153 68.235 1 49.6 ? N6A FAD 609 A 1 HETATM 19 N N1A FAD . . . B 2 27.857 42.913 68.665 1 49.31 ? N1A FAD 609 A 1 HETATM 20 C C2A FAD . . . B 2 28.577 43.678 69.516 1 47.94 ? C2A FAD 609 A 1 HETATM 21 N N3A FAD . . . B 2 28.508 43.518 70.835 1 47.84 ? N3A FAD 609 A 1 HETATM 22 C C4A FAD . . . B 2 27.707 42.577 71.403 1 49.2 ? C4A FAD 609 A 1 HETATM 23 N N1 FAD . . . B 2 31.939 36.617 88.702 1 66.74 ? N1 FAD 609 A 1 HETATM 24 C C2 FAD . . . B 2 32.853 36.509 89.681 1 67.01 ? C2 FAD 609 A 1 HETATM 25 O O2 FAD . . . B 2 34.015 36.449 89.375 1 66.67 ? O2 FAD 609 A 1 HETATM 26 N N3 FAD . . . B 2 32.58 36.508 90.972 1 68.31 ? N3 FAD 609 A 1 HETATM 27 C C4 FAD . . . B 2 31.315 36.559 91.437 1 69.88 ? C4 FAD 609 A 1 HETATM 28 O O4 FAD . . . B 2 31.092 36.563 92.62 1 72.89 ? O4 FAD 609 A 1 HETATM 29 C C4X FAD . . . B 2 30.23 36.686 90.421 1 68.43 ? C4X FAD 609 A 1 HETATM 30 N N5 FAD . . . B 2 28.971 36.733 90.77 1 69.01 ? N5 FAD 609 A 1 HETATM 31 C C5X FAD . . . B 2 27.965 36.836 89.853 1 68.76 ? C5X FAD 609 A 1 HETATM 32 C C6 FAD . . . B 2 26.611 36.918 90.316 1 69.2 ? C6 FAD 609 A 1 HETATM 33 C C7 FAD . . . B 2 25.578 37.013 89.351 1 68.79 ? C7 FAD 609 A 1 HETATM 34 C C7M FAD . . . B 2 24.146 37.109 89.784 1 68.84 ? C7M FAD 609 A 1 HETATM 35 C C8 FAD . . . B 2 25.869 37.044 87.951 1 68.86 ? C8 FAD 609 A 1 HETATM 36 C C8M FAD . . . B 2 24.768 37.149 86.952 1 68.58 ? C8M FAD 609 A 1 HETATM 37 C C9 FAD . . . B 2 27.177 36.966 87.489 1 68.2 ? C9 FAD 609 A 1 HETATM 38 C C9A FAD . . . B 2 28.247 36.866 88.437 1 68.53 ? C9A FAD 609 A 1 HETATM 39 N N10 FAD . . . B 2 29.616 36.8 87.977 1 68.46 ? N10 FAD 609 A 1 HETATM 40 C C10 FAD . . . B 2 30.635 36.662 88.966 1 67.52 ? C10 FAD 609 A 1 HETATM 41 C C1' FAD . . . B 2 29.816 36.881 86.493 1 70.92 ? C1' FAD 609 A 1 HETATM 42 C C2' FAD . . . B 2 31.181 36.731 85.805 1 73.33 ? C2' FAD 609 A 1 HETATM 43 O O2' FAD . . . B 2 32.067 37.655 86.408 1 77.36 ? O2' FAD 609 A 1 HETATM 44 C C3' FAD . . . B 2 30.931 37.096 84.312 1 72.78 ? C3' FAD 609 A 1 HETATM 45 O O3' FAD . . . B 2 30.019 36.15 83.735 1 74.5 ? O3' FAD 609 A 1 HETATM 46 C C4' FAD . . . B 2 32.147 37.058 83.356 1 71.62 ? C4' FAD 609 A 1 HETATM 47 O O4' FAD . . . B 2 33.149 37.962 83.864 1 76.06 ? O4' FAD 609 A 1 HETATM 48 C C5' FAD . . . B 2 31.639 37.633 82.045 1 68.19 ? C5' FAD 609 A 1 HETATM 49 O O5' FAD . . . B 2 32.537 37.665 80.92 1 65.04 ? O5' FAD 609 A 1 HETATM 50 P P FAD . . . B 2 31.614 38.556 79.968 1 59.09 ? P FAD 609 A 1 HETATM 51 O O1P FAD . . . B 2 32.858 39.367 79.914 1 60.39 ? O1P FAD 609 A 1 HETATM 52 O O2P FAD . . . B 2 31.408 37.197 79.142 1 57.4 ? O2P FAD 609 A 1 HETATM 53 O O3P FAD . . . B 2 31.479 39.218 78.565 1 57.15 ? O3P FAD 609 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #