data_3DA9 # _model_server_result.job_id 1F_OVJo49vrlQq4TogljMA _model_server_result.datetime_utc '2024-11-22 05:02:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3da9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 3DA9 # _exptl.entry_id 3DA9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.35 _cell.angle_gamma 90 _cell.entry_id 3DA9 _cell.length_a 69.83 _cell.length_b 71.455 _cell.length_c 71.905 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 B SG CYS 119 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 B SG CYS 28 B CYS 64 1_555 B SG CYS 44 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 173 B CYS 203 1_555 B SG CYS 187 B CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 201 B CYS 231 1_555 B SG CYS 231 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 C C GLU 8 D GLU 362 1_555 C N PTR 9 D PTR 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 B O ARG 233 B ARG 263 1_555 D NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 B O LYS 236 B LYS 266 1_555 D NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 D NA NA . B NA 402 1_555 G O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 D NA NA . B NA 402 1_555 G O HOH . B HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc5 D NA NA . B NA 402 1_555 G O HOH . B HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc6 D NA NA . B NA 402 1_555 G O HOH . B HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DA9 _atom_sites.fract_transf_matrix[1][1] 0.01432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002615 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA B 1 402 402 NA NA . E 5 44U B 1 1 1 44U 44U . F 6 HOH A 1 37 9 HOH HOH . F 6 HOH A 2 38 20 HOH HOH . F 6 HOH A 3 39 22 HOH HOH . F 6 HOH A 4 40 35 HOH HOH . F 6 HOH A 5 41 37 HOH HOH . F 6 HOH A 6 42 43 HOH HOH . F 6 HOH A 7 43 51 HOH HOH . F 6 HOH A 8 44 52 HOH HOH . F 6 HOH A 9 45 63 HOH HOH . F 6 HOH A 10 46 66 HOH HOH . F 6 HOH A 11 47 80 HOH HOH . F 6 HOH A 12 48 93 HOH HOH . F 6 HOH A 13 49 95 HOH HOH . F 6 HOH A 14 50 107 HOH HOH . F 6 HOH A 15 51 113 HOH HOH . F 6 HOH A 16 52 115 HOH HOH . F 6 HOH A 17 53 120 HOH HOH . F 6 HOH A 18 54 130 HOH HOH . F 6 HOH A 19 55 139 HOH HOH . F 6 HOH A 20 56 141 HOH HOH . F 6 HOH A 21 57 151 HOH HOH . F 6 HOH A 22 58 157 HOH HOH . F 6 HOH A 23 59 159 HOH HOH . F 6 HOH A 24 60 171 HOH HOH . F 6 HOH A 25 61 179 HOH HOH . F 6 HOH A 26 62 206 HOH HOH . F 6 HOH A 27 63 207 HOH HOH . F 6 HOH A 28 64 210 HOH HOH . F 6 HOH A 29 65 217 HOH HOH . F 6 HOH A 30 66 234 HOH HOH . F 6 HOH A 31 67 244 HOH HOH . F 6 HOH A 32 68 250 HOH HOH . F 6 HOH A 33 69 265 HOH HOH . G 6 HOH B 1 403 1 HOH HOH . G 6 HOH B 2 404 2 HOH HOH . G 6 HOH B 3 405 3 HOH HOH . G 6 HOH B 4 406 4 HOH HOH . G 6 HOH B 5 407 5 HOH HOH . G 6 HOH B 6 408 6 HOH HOH . G 6 HOH B 7 409 7 HOH HOH . G 6 HOH B 8 410 8 HOH HOH . G 6 HOH B 9 411 10 HOH HOH . G 6 HOH B 10 412 11 HOH HOH . G 6 HOH B 11 413 12 HOH HOH . G 6 HOH B 12 414 13 HOH HOH . G 6 HOH B 13 415 14 HOH HOH . G 6 HOH B 14 416 15 HOH HOH . G 6 HOH B 15 417 16 HOH HOH . G 6 HOH B 16 418 17 HOH HOH . G 6 HOH B 17 419 18 HOH HOH . G 6 HOH B 18 420 19 HOH HOH . G 6 HOH B 19 421 21 HOH HOH . G 6 HOH B 20 422 23 HOH HOH . G 6 HOH B 21 423 24 HOH HOH . G 6 HOH B 22 424 25 HOH HOH . G 6 HOH B 23 425 26 HOH HOH . G 6 HOH B 24 426 27 HOH HOH . G 6 HOH B 25 427 28 HOH HOH . G 6 HOH B 26 428 29 HOH HOH . G 6 HOH B 27 429 30 HOH HOH . G 6 HOH B 28 430 32 HOH HOH . G 6 HOH B 29 431 33 HOH HOH . G 6 HOH B 30 432 34 HOH HOH . G 6 HOH B 31 433 36 HOH HOH . G 6 HOH B 32 434 38 HOH HOH . G 6 HOH B 33 435 40 HOH HOH . G 6 HOH B 34 436 41 HOH HOH . G 6 HOH B 35 437 42 HOH HOH . G 6 HOH B 36 438 44 HOH HOH . G 6 HOH B 37 439 45 HOH HOH . G 6 HOH B 38 440 46 HOH HOH . G 6 HOH B 39 441 47 HOH HOH . G 6 HOH B 40 442 48 HOH HOH . G 6 HOH B 41 443 49 HOH HOH . G 6 HOH B 42 444 50 HOH HOH . G 6 HOH B 43 445 53 HOH HOH . G 6 HOH B 44 446 54 HOH HOH . G 6 HOH B 45 447 55 HOH HOH . G 6 HOH B 46 448 56 HOH HOH . G 6 HOH B 47 449 57 HOH HOH . G 6 HOH B 48 450 58 HOH HOH . G 6 HOH B 49 451 59 HOH HOH . G 6 HOH B 50 452 60 HOH HOH . G 6 HOH B 51 453 61 HOH HOH . G 6 HOH B 52 454 62 HOH HOH . G 6 HOH B 53 455 64 HOH HOH . G 6 HOH B 54 456 65 HOH HOH . G 6 HOH B 55 457 67 HOH HOH . G 6 HOH B 56 458 68 HOH HOH . G 6 HOH B 57 459 69 HOH HOH . G 6 HOH B 58 460 70 HOH HOH . G 6 HOH B 59 461 71 HOH HOH . G 6 HOH B 60 462 72 HOH HOH . G 6 HOH B 61 463 73 HOH HOH . G 6 HOH B 62 464 74 HOH HOH . G 6 HOH B 63 465 75 HOH HOH . G 6 HOH B 64 466 76 HOH HOH . G 6 HOH B 65 467 77 HOH HOH . G 6 HOH B 66 468 78 HOH HOH . G 6 HOH B 67 469 79 HOH HOH . G 6 HOH B 68 470 81 HOH HOH . G 6 HOH B 69 471 82 HOH HOH . G 6 HOH B 70 472 83 HOH HOH . G 6 HOH B 71 473 84 HOH HOH . G 6 HOH B 72 474 85 HOH HOH . G 6 HOH B 73 475 86 HOH HOH . G 6 HOH B 74 476 87 HOH HOH . G 6 HOH B 75 477 88 HOH HOH . G 6 HOH B 76 478 89 HOH HOH . G 6 HOH B 77 479 90 HOH HOH . G 6 HOH B 78 480 91 HOH HOH . G 6 HOH B 79 481 92 HOH HOH . G 6 HOH B 80 482 94 HOH HOH . G 6 HOH B 81 483 97 HOH HOH . G 6 HOH B 82 484 98 HOH HOH . G 6 HOH B 83 485 99 HOH HOH . G 6 HOH B 84 486 100 HOH HOH . G 6 HOH B 85 487 101 HOH HOH . G 6 HOH B 86 488 102 HOH HOH . G 6 HOH B 87 489 103 HOH HOH . G 6 HOH B 88 490 104 HOH HOH . G 6 HOH B 89 491 105 HOH HOH . G 6 HOH B 90 492 106 HOH HOH . G 6 HOH B 91 493 108 HOH HOH . G 6 HOH B 92 494 109 HOH HOH . G 6 HOH B 93 495 110 HOH HOH . G 6 HOH B 94 496 111 HOH HOH . G 6 HOH B 95 497 112 HOH HOH . G 6 HOH B 96 498 114 HOH HOH . G 6 HOH B 97 499 116 HOH HOH . G 6 HOH B 98 500 117 HOH HOH . G 6 HOH B 99 501 118 HOH HOH . G 6 HOH B 100 502 119 HOH HOH . G 6 HOH B 101 503 121 HOH HOH . G 6 HOH B 102 504 122 HOH HOH . G 6 HOH B 103 505 123 HOH HOH . G 6 HOH B 104 506 124 HOH HOH . G 6 HOH B 105 507 125 HOH HOH . G 6 HOH B 106 508 126 HOH HOH . G 6 HOH B 107 509 127 HOH HOH . G 6 HOH B 108 510 128 HOH HOH . G 6 HOH B 109 511 129 HOH HOH . G 6 HOH B 110 512 131 HOH HOH . G 6 HOH B 111 513 132 HOH HOH . G 6 HOH B 112 514 133 HOH HOH . G 6 HOH B 113 515 134 HOH HOH . G 6 HOH B 114 516 135 HOH HOH . G 6 HOH B 115 517 136 HOH HOH . G 6 HOH B 116 518 137 HOH HOH . G 6 HOH B 117 519 138 HOH HOH . G 6 HOH B 118 520 140 HOH HOH . G 6 HOH B 119 521 142 HOH HOH . G 6 HOH B 120 522 143 HOH HOH . G 6 HOH B 121 523 144 HOH HOH . G 6 HOH B 122 524 145 HOH HOH . G 6 HOH B 123 525 146 HOH HOH . G 6 HOH B 124 526 147 HOH HOH . G 6 HOH B 125 527 148 HOH HOH . G 6 HOH B 126 528 149 HOH HOH . G 6 HOH B 127 530 152 HOH HOH . G 6 HOH B 128 531 153 HOH HOH . G 6 HOH B 129 532 154 HOH HOH . G 6 HOH B 130 533 155 HOH HOH . G 6 HOH B 131 534 156 HOH HOH . G 6 HOH B 132 535 158 HOH HOH . G 6 HOH B 133 536 160 HOH HOH . G 6 HOH B 134 537 161 HOH HOH . G 6 HOH B 135 538 162 HOH HOH . G 6 HOH B 136 539 163 HOH HOH . G 6 HOH B 137 540 164 HOH HOH . G 6 HOH B 138 541 165 HOH HOH . G 6 HOH B 139 542 166 HOH HOH . G 6 HOH B 140 543 167 HOH HOH . G 6 HOH B 141 544 168 HOH HOH . G 6 HOH B 142 545 169 HOH HOH . G 6 HOH B 143 546 170 HOH HOH . G 6 HOH B 144 547 172 HOH HOH . G 6 HOH B 145 548 173 HOH HOH . G 6 HOH B 146 549 174 HOH HOH . G 6 HOH B 147 550 175 HOH HOH . G 6 HOH B 148 551 176 HOH HOH . G 6 HOH B 149 552 177 HOH HOH . G 6 HOH B 150 553 178 HOH HOH . G 6 HOH B 151 554 180 HOH HOH . G 6 HOH B 152 555 181 HOH HOH . G 6 HOH B 153 556 182 HOH HOH . G 6 HOH B 154 557 183 HOH HOH . G 6 HOH B 155 558 184 HOH HOH . G 6 HOH B 156 559 185 HOH HOH . G 6 HOH B 157 560 186 HOH HOH . G 6 HOH B 158 561 187 HOH HOH . G 6 HOH B 159 562 188 HOH HOH . G 6 HOH B 160 563 189 HOH HOH . G 6 HOH B 161 564 190 HOH HOH . G 6 HOH B 162 565 191 HOH HOH . G 6 HOH B 163 566 192 HOH HOH . G 6 HOH B 164 567 193 HOH HOH . G 6 HOH B 165 568 194 HOH HOH . G 6 HOH B 166 569 195 HOH HOH . G 6 HOH B 167 570 196 HOH HOH . G 6 HOH B 168 571 197 HOH HOH . G 6 HOH B 169 572 198 HOH HOH . G 6 HOH B 170 573 200 HOH HOH . G 6 HOH B 171 574 201 HOH HOH . G 6 HOH B 172 575 202 HOH HOH . G 6 HOH B 173 576 203 HOH HOH . G 6 HOH B 174 577 204 HOH HOH . G 6 HOH B 175 578 205 HOH HOH . G 6 HOH B 176 579 208 HOH HOH . G 6 HOH B 177 580 209 HOH HOH . G 6 HOH B 178 581 211 HOH HOH . G 6 HOH B 179 582 213 HOH HOH . G 6 HOH B 180 583 214 HOH HOH . G 6 HOH B 181 584 216 HOH HOH . G 6 HOH B 182 585 218 HOH HOH . G 6 HOH B 183 586 219 HOH HOH . G 6 HOH B 184 587 220 HOH HOH . G 6 HOH B 185 588 221 HOH HOH . G 6 HOH B 186 589 222 HOH HOH . G 6 HOH B 187 590 223 HOH HOH . G 6 HOH B 188 591 224 HOH HOH . G 6 HOH B 189 592 225 HOH HOH . G 6 HOH B 190 593 226 HOH HOH . G 6 HOH B 191 594 227 HOH HOH . G 6 HOH B 192 595 228 HOH HOH . G 6 HOH B 193 596 229 HOH HOH . G 6 HOH B 194 597 230 HOH HOH . G 6 HOH B 195 598 232 HOH HOH . G 6 HOH B 196 599 233 HOH HOH . G 6 HOH B 197 600 236 HOH HOH . G 6 HOH B 198 601 238 HOH HOH . G 6 HOH B 199 602 239 HOH HOH . G 6 HOH B 200 603 240 HOH HOH . G 6 HOH B 201 604 242 HOH HOH . G 6 HOH B 202 605 243 HOH HOH . G 6 HOH B 203 606 245 HOH HOH . G 6 HOH B 204 607 247 HOH HOH . G 6 HOH B 205 608 248 HOH HOH . G 6 HOH B 206 609 249 HOH HOH . G 6 HOH B 207 610 251 HOH HOH . G 6 HOH B 208 611 252 HOH HOH . G 6 HOH B 209 612 253 HOH HOH . G 6 HOH B 210 613 254 HOH HOH . G 6 HOH B 211 614 255 HOH HOH . G 6 HOH B 212 615 257 HOH HOH . G 6 HOH B 213 616 259 HOH HOH . G 6 HOH B 214 617 260 HOH HOH . G 6 HOH B 215 618 262 HOH HOH . G 6 HOH B 216 619 263 HOH HOH . G 6 HOH B 217 620 266 HOH HOH . G 6 HOH B 218 621 267 HOH HOH . G 6 HOH B 219 622 268 HOH HOH . G 6 HOH B 220 623 269 HOH HOH . G 6 HOH B 221 624 271 HOH HOH . G 6 HOH B 222 625 272 HOH HOH . G 6 HOH B 223 626 273 HOH HOH . G 6 HOH B 224 627 1 HOH HOH . G 6 HOH B 225 628 2 HOH HOH . G 6 HOH B 226 629 4 HOH HOH . G 6 HOH B 227 630 5 HOH HOH . G 6 HOH B 228 631 6 HOH HOH . G 6 HOH B 229 632 7 HOH HOH . G 6 HOH B 230 633 11 HOH HOH . G 6 HOH B 231 634 12 HOH HOH . G 6 HOH B 232 635 14 HOH HOH . G 6 HOH B 233 636 15 HOH HOH . G 6 HOH B 234 637 17 HOH HOH . G 6 HOH B 235 638 22 HOH HOH . G 6 HOH B 236 639 39 HOH HOH . H 6 HOH D 1 39 39 HOH HOH . H 6 HOH D 2 96 96 HOH HOH . H 6 HOH D 3 199 199 HOH HOH . H 6 HOH D 4 212 212 HOH HOH . H 6 HOH D 5 215 215 HOH HOH . H 6 HOH D 6 246 246 HOH HOH . H 6 HOH D 7 270 270 HOH HOH . H 6 HOH D 8 529 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.669 _atom_site.Cartn_y -12.821 _atom_site.Cartn_z 30.373 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #